Protein–RNA interactions for Protein: Q9BWH6

RPAP1, RNA polymerase II-associated protein 1, humanhuman

Predicted RBP Predictions only

Length 1,393 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RPAP1Q9BWH6 AC073314.1-201ENST00000568729 2216 ntBASIC24.54■■□□□ 1.52
RPAP1Q9BWH6 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC24.54■■□□□ 1.52
RPAP1Q9BWH6 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC24.54■■□□□ 1.52
RPAP1Q9BWH6 SOX15-202ENST00000538513 1050 ntAPPRIS P1 TSL 1 (best) BASIC24.54■■□□□ 1.52
RPAP1Q9BWH6 SOX15-203ENST00000570788 1093 ntBASIC24.54■■□□□ 1.52
RPAP1Q9BWH6 AC092667.1-201ENST00000434301 2586 ntBASIC24.53■■□□□ 1.52
RPAP1Q9BWH6 RCN1-201ENST00000054950 2572 ntAPPRIS P2 TSL 1 (best) BASIC24.53■■□□□ 1.52
RPAP1Q9BWH6 CRK-204ENST00000574295 1391 ntTSL 5 BASIC24.53■■□□□ 1.52
RPAP1Q9BWH6 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC24.53■■□□□ 1.52
RPAP1Q9BWH6 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC24.53■■□□□ 1.52
RPAP1Q9BWH6 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC24.53■■□□□ 1.52
RPAP1Q9BWH6 R3HCC1-210ENST00000625275 1489 ntAPPRIS ALT2 TSL 1 (best) BASIC24.53■■□□□ 1.52
RPAP1Q9BWH6 ARL2-201ENST00000246747 979 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
RPAP1Q9BWH6 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
RPAP1Q9BWH6 PDZRN3-202ENST00000308537 1136 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
RPAP1Q9BWH6 N4BP2L1-203ENST00000380133 903 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
RPAP1Q9BWH6 AC004889.1-203ENST00000464929 819 ntTSL 5 BASIC24.53■■□□□ 1.52
RPAP1Q9BWH6 OR2A1-AS1-207ENST00000486094 819 ntBASIC24.53■■□□□ 1.52
RPAP1Q9BWH6 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC24.53■■□□□ 1.52
RPAP1Q9BWH6 KLF2-202ENST00000592003 564 ntTSL 3 BASIC24.53■■□□□ 1.52
RPAP1Q9BWH6 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC24.53■■□□□ 1.52
RPAP1Q9BWH6 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC24.53■■□□□ 1.52
RPAP1Q9BWH6 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC24.53■■□□□ 1.52
RPAP1Q9BWH6 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
RPAP1Q9BWH6 KCNS3-201ENST00000304101 2333 ntAPPRIS P1 TSL 1 (best) BASIC24.53■■□□□ 1.52
RPAP1Q9BWH6 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC24.52■■□□□ 1.52
RPAP1Q9BWH6 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC24.52■■□□□ 1.52
RPAP1Q9BWH6 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC24.52■■□□□ 1.52
RPAP1Q9BWH6 BID-203ENST00000399765 1879 ntTSL 2 BASIC24.52■■□□□ 1.52
RPAP1Q9BWH6 RLBP1-201ENST00000268125 1810 ntAPPRIS P1 TSL 1 (best) BASIC24.52■■□□□ 1.52
RPAP1Q9BWH6 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC24.52■■□□□ 1.52
RPAP1Q9BWH6 AC007225.1-201ENST00000566331 1836 ntBASIC24.52■■□□□ 1.52
RPAP1Q9BWH6 MFF-205ENST00000354503 1085 ntTSL 2 BASIC24.52■■□□□ 1.52
RPAP1Q9BWH6 KRT17P3-201ENST00000420566 1262 ntBASIC24.52■■□□□ 1.52
RPAP1Q9BWH6 AC092849.2-201ENST00000492523 333 ntTSL 3 BASIC24.52■■□□□ 1.52
RPAP1Q9BWH6 RPPH1-201ENST00000516869 333 ntBASIC24.52■■□□□ 1.52
RPAP1Q9BWH6 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC24.52■■□□□ 1.52
RPAP1Q9BWH6 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC24.52■■□□□ 1.52
RPAP1Q9BWH6 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC24.52■■□□□ 1.52
RPAP1Q9BWH6 AUNIP-203ENST00000538789 1392 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
RPAP1Q9BWH6 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC24.51■■□□□ 1.51
RPAP1Q9BWH6 RNF32-207ENST00000405335 1938 ntAPPRIS P1 TSL 5 BASIC24.51■■□□□ 1.51
RPAP1Q9BWH6 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC24.51■■□□□ 1.51
RPAP1Q9BWH6 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC24.51■■□□□ 1.51
RPAP1Q9BWH6 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC24.51■■□□□ 1.51
RPAP1Q9BWH6 FAM129C-203ENST00000449408 2004 ntAPPRIS ALT2 TSL 2 BASIC24.51■■□□□ 1.51
RPAP1Q9BWH6 NFYC-204ENST00000372653 1862 ntTSL 2 BASIC24.51■■□□□ 1.51
RPAP1Q9BWH6 C19orf35-201ENST00000342063 2574 ntAPPRIS P1 TSL 2 BASIC24.51■■□□□ 1.51
RPAP1Q9BWH6 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC24.51■■□□□ 1.51
RPAP1Q9BWH6 AC087633.2-202ENST00000565166 1439 ntBASIC24.51■■□□□ 1.51
RPAP1Q9BWH6 UBE2C-201ENST00000243893 476 ntTSL 2 BASIC24.51■■□□□ 1.51
RPAP1Q9BWH6 AC012146.1-202ENST00000413077 474 ntTSL 2 BASIC24.51■■□□□ 1.51
RPAP1Q9BWH6 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC24.51■■□□□ 1.51
RPAP1Q9BWH6 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC24.51■■□□□ 1.51
RPAP1Q9BWH6 AC233263.1-201ENST00000578059 224 ntBASIC24.51■■□□□ 1.51
RPAP1Q9BWH6 EML2-AS1-202ENST00000591087 838 ntTSL 3 BASIC24.51■■□□□ 1.51
RPAP1Q9BWH6 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC24.51■■□□□ 1.51
RPAP1Q9BWH6 TRIM4-202ENST00000354241 1942 ntTSL 1 (best) BASIC24.51■■□□□ 1.51
RPAP1Q9BWH6 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC24.51■■□□□ 1.51
RPAP1Q9BWH6 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC24.51■■□□□ 1.51
RPAP1Q9BWH6 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
RPAP1Q9BWH6 RELT-202ENST00000393580 2669 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
RPAP1Q9BWH6 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC24.5■■□□□ 1.51
RPAP1Q9BWH6 NXN-202ENST00000537628 1340 ntTSL 3 BASIC24.5■■□□□ 1.51
RPAP1Q9BWH6 TSPAN3-207ENST00000559494 1326 ntTSL 5 BASIC24.5■■□□□ 1.51
RPAP1Q9BWH6 NRN1-203ENST00000616243 1556 ntAPPRIS P1 TSL 4 BASIC24.5■■□□□ 1.51
RPAP1Q9BWH6 ZNF282-203ENST00000479907 1815 ntTSL 2 BASIC24.5■■□□□ 1.51
RPAP1Q9BWH6 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC24.5■■□□□ 1.51
RPAP1Q9BWH6 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC24.5■■□□□ 1.51
RPAP1Q9BWH6 SLC17A7-201ENST00000221485 2973 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
RPAP1Q9BWH6 DVL3-201ENST00000313143 5254 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
RPAP1Q9BWH6 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
RPAP1Q9BWH6 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC24.5■■□□□ 1.51
RPAP1Q9BWH6 MIR718-201ENST00000390190 70 ntBASIC24.5■■□□□ 1.51
RPAP1Q9BWH6 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC24.5■■□□□ 1.51
RPAP1Q9BWH6 AC010531.6-201ENST00000602282 401 ntTSL 2 BASIC24.5■■□□□ 1.51
RPAP1Q9BWH6 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC24.5■■□□□ 1.51
RPAP1Q9BWH6 EXOC3L2-202ENST00000413988 2964 ntAPPRIS P1 TSL 5 BASIC24.5■■□□□ 1.51
RPAP1Q9BWH6 RORA-204ENST00000449337 1701 ntAPPRIS ALT2 TSL 1 (best) BASIC24.5■■□□□ 1.51
RPAP1Q9BWH6 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC24.5■■□□□ 1.51
RPAP1Q9BWH6 DNAH17-AS1-202ENST00000591373 1453 ntTSL 5 BASIC24.5■■□□□ 1.51
RPAP1Q9BWH6 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC24.49■■□□□ 1.51
RPAP1Q9BWH6 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
RPAP1Q9BWH6 MARC2-201ENST00000359316 1335 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
RPAP1Q9BWH6 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC24.49■■□□□ 1.51
RPAP1Q9BWH6 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC24.49■■□□□ 1.51
RPAP1Q9BWH6 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC24.49■■□□□ 1.51
RPAP1Q9BWH6 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC24.49■■□□□ 1.51
RPAP1Q9BWH6 AC027702.1-201ENST00000563810 1770 ntBASIC24.49■■□□□ 1.51
RPAP1Q9BWH6 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC24.49■■□□□ 1.51
RPAP1Q9BWH6 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC24.49■■□□□ 1.51
RPAP1Q9BWH6 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC24.49■■□□□ 1.51
RPAP1Q9BWH6 PGM5P4-201ENST00000421970 445 ntBASIC24.49■■□□□ 1.51
RPAP1Q9BWH6 C1QBPP2-201ENST00000528754 825 ntBASIC24.49■■□□□ 1.51
RPAP1Q9BWH6 TNFRSF1B-204ENST00000536782 557 ntTSL 1 (best) BASIC24.49■■□□□ 1.51
RPAP1Q9BWH6 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC24.49■■□□□ 1.51
RPAP1Q9BWH6 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
RPAP1Q9BWH6 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC24.49■■□□□ 1.51
RPAP1Q9BWH6 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC24.49■■□□□ 1.51
RPAP1Q9BWH6 GNB1-209ENST00000610897 3145 ntAPPRIS P1 TSL 5 BASIC24.49■■□□□ 1.51
Retrieved 100 of 98,524 protein–RNA pairs in 21.1 ms