Protein–RNA interactions for Protein: Q9BSE4

HERPUD2, Homocysteine-responsive endoplasmic reticulum-resident ubiquitin-like domain member 2 protein, humanhuman

Predictions only

Length 406 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD2Q9BSE4 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
HERPUD2Q9BSE4 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
HERPUD2Q9BSE4 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
HERPUD2Q9BSE4 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC20.93■□□□□ 0.94
HERPUD2Q9BSE4 COL13A1-201ENST00000354547 3027 ntAPPRIS ALT2 TSL 5 BASIC20.93■□□□□ 0.94
HERPUD2Q9BSE4 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC20.93■□□□□ 0.94
HERPUD2Q9BSE4 ARNTL2-204ENST00000395901 1954 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
HERPUD2Q9BSE4 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC20.92■□□□□ 0.94
HERPUD2Q9BSE4 FAM76B-204ENST00000536839 2546 ntAPPRIS ALT1 TSL 5 BASIC20.92■□□□□ 0.94
HERPUD2Q9BSE4 CNN2P6-201ENST00000439038 900 ntBASIC20.92■□□□□ 0.94
HERPUD2Q9BSE4 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC20.92■□□□□ 0.94
HERPUD2Q9BSE4 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC20.92■□□□□ 0.94
HERPUD2Q9BSE4 AL591742.1-201ENST00000604433 565 ntBASIC20.92■□□□□ 0.94
HERPUD2Q9BSE4 AC011767.1-201ENST00000617410 1153 ntBASIC20.92■□□□□ 0.94
HERPUD2Q9BSE4 WWOX-218ENST00000627394 894 ntTSL 5 BASIC20.92■□□□□ 0.94
HERPUD2Q9BSE4 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC20.92■□□□□ 0.94
HERPUD2Q9BSE4 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
HERPUD2Q9BSE4 CRMP1-201ENST00000324989 3146 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
HERPUD2Q9BSE4 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC20.92■□□□□ 0.94
HERPUD2Q9BSE4 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
HERPUD2Q9BSE4 FFAR3-201ENST00000327809 1796 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
HERPUD2Q9BSE4 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC20.92■□□□□ 0.94
HERPUD2Q9BSE4 BHLHE22-201ENST00000321870 3262 ntAPPRIS P1 BASIC20.91■□□□□ 0.94
HERPUD2Q9BSE4 KLF2-201ENST00000248071 2018 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
HERPUD2Q9BSE4 FBXO27-201ENST00000292853 2330 ntAPPRIS P2 TSL 1 (best) BASIC20.91■□□□□ 0.94
HERPUD2Q9BSE4 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
HERPUD2Q9BSE4 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
HERPUD2Q9BSE4 HSCB-202ENST00000398941 955 ntTSL 2 BASIC20.91■□□□□ 0.94
HERPUD2Q9BSE4 AC004911.1-201ENST00000416316 871 ntBASIC20.91■□□□□ 0.94
HERPUD2Q9BSE4 AC006015.1-201ENST00000429970 570 ntBASIC20.91■□□□□ 0.94
HERPUD2Q9BSE4 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC20.91■□□□□ 0.94
HERPUD2Q9BSE4 SAC3D1-205ENST00000531072 1362 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
HERPUD2Q9BSE4 ZNF561-AS1-205ENST00000588765 579 ntTSL 4 BASIC20.91■□□□□ 0.94
HERPUD2Q9BSE4 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
HERPUD2Q9BSE4 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC20.91■□□□□ 0.94
HERPUD2Q9BSE4 PDLIM3-212ENST00000620787 2352 ntTSL 4 BASIC20.91■□□□□ 0.94
HERPUD2Q9BSE4 PCDHB11-202ENST00000624887 1973 ntTSL 2 BASIC20.91■□□□□ 0.94
HERPUD2Q9BSE4 AKT2-206ENST00000392038 5300 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
HERPUD2Q9BSE4 CXXC5-201ENST00000302517 2658 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
HERPUD2Q9BSE4 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC20.9■□□□□ 0.94
HERPUD2Q9BSE4 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
HERPUD2Q9BSE4 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
HERPUD2Q9BSE4 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC20.9■□□□□ 0.94
HERPUD2Q9BSE4 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC20.9■□□□□ 0.94
HERPUD2Q9BSE4 SPRED3-202ENST00000586301 1366 ntAPPRIS P1 TSL 5 BASIC20.9■□□□□ 0.94
HERPUD2Q9BSE4 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC20.9■□□□□ 0.94
HERPUD2Q9BSE4 CD47-202ENST00000361309 1285 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
HERPUD2Q9BSE4 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC20.9■□□□□ 0.94
HERPUD2Q9BSE4 ZNF302-209ENST00000507959 854 ntTSL 2 BASIC20.9■□□□□ 0.94
HERPUD2Q9BSE4 AC007322.4-201ENST00000509611 723 ntBASIC20.9■□□□□ 0.94
HERPUD2Q9BSE4 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC20.9■□□□□ 0.94
HERPUD2Q9BSE4 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC20.9■□□□□ 0.94
HERPUD2Q9BSE4 KRT1-201ENST00000252244 2451 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
HERPUD2Q9BSE4 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC20.9■□□□□ 0.94
HERPUD2Q9BSE4 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC20.9■□□□□ 0.94
HERPUD2Q9BSE4 PTBP1P-201ENST00000554374 1601 ntBASIC20.89■□□□□ 0.94
HERPUD2Q9BSE4 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC20.89■□□□□ 0.94
HERPUD2Q9BSE4 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
HERPUD2Q9BSE4 MAGI2-212ENST00000626691 4599 ntTSL 5 BASIC20.89■□□□□ 0.94
HERPUD2Q9BSE4 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC20.89■□□□□ 0.94
HERPUD2Q9BSE4 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
HERPUD2Q9BSE4 GAS2L1P2-201ENST00000436355 1356 ntBASIC20.89■□□□□ 0.93
HERPUD2Q9BSE4 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC20.89■□□□□ 0.93
HERPUD2Q9BSE4 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
HERPUD2Q9BSE4 PFKFB3-202ENST00000360521 1964 ntAPPRIS P2 TSL 5 BASIC20.89■□□□□ 0.93
HERPUD2Q9BSE4 CCDC74B-205ENST00000409943 1296 ntAPPRIS ALT2 TSL 1 (best) BASIC20.89■□□□□ 0.93
HERPUD2Q9BSE4 KRT18P11-201ENST00000435214 1283 ntBASIC20.89■□□□□ 0.93
HERPUD2Q9BSE4 DUX4L16-201ENST00000555130 1264 ntBASIC20.89■□□□□ 0.93
HERPUD2Q9BSE4 AL032819.3-201ENST00000640283 925 ntAPPRIS P1 TSL 5 BASIC20.89■□□□□ 0.93
HERPUD2Q9BSE4 MAPK8IP1-201ENST00000241014 3050 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
HERPUD2Q9BSE4 AC116562.4-201ENST00000641316 2276 ntBASIC20.89■□□□□ 0.93
HERPUD2Q9BSE4 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
HERPUD2Q9BSE4 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
HERPUD2Q9BSE4 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC20.88■□□□□ 0.93
HERPUD2Q9BSE4 RCCD1-201ENST00000394258 2689 ntAPPRIS P2 TSL 1 (best) BASIC20.88■□□□□ 0.93
HERPUD2Q9BSE4 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HERPUD2Q9BSE4 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC20.88■□□□□ 0.93
HERPUD2Q9BSE4 SMIM12-202ENST00000423898 897 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
HERPUD2Q9BSE4 DLX3-202ENST00000512495 834 ntTSL 2 BASIC20.88■□□□□ 0.93
HERPUD2Q9BSE4 AP001363.2-201ENST00000538101 391 ntTSL 3 BASIC20.88■□□□□ 0.93
HERPUD2Q9BSE4 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC20.88■□□□□ 0.93
HERPUD2Q9BSE4 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HERPUD2Q9BSE4 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
HERPUD2Q9BSE4 NEU4-205ENST00000407683 2273 ntAPPRIS P1 TSL 2 BASIC20.88■□□□□ 0.93
HERPUD2Q9BSE4 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
HERPUD2Q9BSE4 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HERPUD2Q9BSE4 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
HERPUD2Q9BSE4 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
HERPUD2Q9BSE4 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
HERPUD2Q9BSE4 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC20.87■□□□□ 0.93
HERPUD2Q9BSE4 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC20.87■□□□□ 0.93
HERPUD2Q9BSE4 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HERPUD2Q9BSE4 PPA1-202ENST00000373232 1295 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
HERPUD2Q9BSE4 VPS53-216ENST00000574029 585 ntTSL 4 BASIC20.87■□□□□ 0.93
HERPUD2Q9BSE4 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC20.87■□□□□ 0.93
HERPUD2Q9BSE4 AC013268.1-206ENST00000638368 961 ntBASIC20.87■□□□□ 0.93
HERPUD2Q9BSE4 AC112229.1-201ENST00000639295 961 ntBASIC20.87■□□□□ 0.93
HERPUD2Q9BSE4 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC20.87■□□□□ 0.93
HERPUD2Q9BSE4 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC20.87■□□□□ 0.93
HERPUD2Q9BSE4 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC20.87■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 68.2 ms