Protein–RNA interactions for Protein: Q99626

CDX2, Homeobox protein CDX-2, humanhuman

Predicted RBP Predictions only

Length 313 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX2Q99626 KRT17P2-202ENST00000326333 1174 ntTSL 2 BASIC21.34■■□□□ 1.01
CDX2Q99626 AL671277.2-201ENST00000458060 996 ntBASIC21.34■■□□□ 1.01
CDX2Q99626 CD81-212ENST00000526072 1172 ntTSL 5 BASIC21.34■■□□□ 1.01
CDX2Q99626 ELAVL1-202ENST00000593807 856 ntTSL 3 BASIC21.34■■□□□ 1.01
CDX2Q99626 ERVK13-1-203ENST00000564340 1449 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CDX2Q99626 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC21.34■■□□□ 1.01
CDX2Q99626 ARG2-201ENST00000261783 2045 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CDX2Q99626 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
CDX2Q99626 SNF8-202ENST00000502492 2319 ntAPPRIS P3 TSL 1 (best) BASIC21.34■■□□□ 1.01
CDX2Q99626 POLDIP2-202ENST00000618887 1524 ntTSL 2 BASIC21.34■■□□□ 1.01
CDX2Q99626 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC21.33■■□□□ 1.01
CDX2Q99626 C12orf76-203ENST00000546651 1755 ntTSL 2 BASIC21.33■■□□□ 1.01
CDX2Q99626 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC21.33■■□□□ 1.01
CDX2Q99626 LINC02361-201ENST00000538731 1484 ntTSL 2 BASIC21.33■■□□□ 1.01
CDX2Q99626 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
CDX2Q99626 TMIGD2-201ENST00000301272 1262 ntAPPRIS P3 TSL 1 (best) BASIC21.33■■□□□ 1.01
CDX2Q99626 GNG5-202ENST00000370645 790 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
CDX2Q99626 PDLIM7-205ENST00000393551 1226 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CDX2Q99626 LINC01786-202ENST00000453732 389 ntTSL 2 BASIC21.33■■□□□ 1.01
CDX2Q99626 NECTIN3-AS1-204ENST00000476301 568 ntTSL 4 BASIC21.33■■□□□ 1.01
CDX2Q99626 AF250324.1-201ENST00000506276 703 ntTSL 3 BASIC21.33■■□□□ 1.01
CDX2Q99626 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC21.33■■□□□ 1.01
CDX2Q99626 AC023632.3-201ENST00000521633 145 ntBASIC21.33■■□□□ 1.01
CDX2Q99626 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC21.33■■□□□ 1.01
CDX2Q99626 CALM1-205ENST00000553542 877 ntTSL 5 BASIC21.33■■□□□ 1.01
CDX2Q99626 AC092490.1-203ENST00000514568 1972 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
CDX2Q99626 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC21.33■■□□□ 1
CDX2Q99626 LHFPL3-202ENST00000424859 1852 ntAPPRIS P5 TSL 1 (best) BASIC21.32■■□□□ 1
CDX2Q99626 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CDX2Q99626 SLC15A3-201ENST00000227880 2115 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CDX2Q99626 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CDX2Q99626 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC21.32■■□□□ 1
CDX2Q99626 MRPS15-201ENST00000373116 1006 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CDX2Q99626 NMRK1-202ENST00000376808 1121 ntTSL 1 (best) BASIC21.32■■□□□ 1
CDX2Q99626 B3GAT3P1-201ENST00000471720 806 ntBASIC21.32■■□□□ 1
CDX2Q99626 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC21.32■■□□□ 1
CDX2Q99626 STK32A-AS1-201ENST00000504297 863 ntTSL 3 BASIC21.32■■□□□ 1
CDX2Q99626 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC21.32■■□□□ 1
CDX2Q99626 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC21.32■■□□□ 1
CDX2Q99626 TMEM249-203ENST00000565365 975 ntAPPRIS P2 TSL 3 BASIC21.32■■□□□ 1
CDX2Q99626 AC026271.3-201ENST00000571884 352 ntBASIC21.32■■□□□ 1
CDX2Q99626 RN7SL510P-201ENST00000581311 263 ntBASIC21.32■■□□□ 1
CDX2Q99626 LINC01785-201ENST00000598042 1112 ntTSL 1 (best) BASIC21.32■■□□□ 1
CDX2Q99626 CHMP2A-208ENST00000601220 885 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
CDX2Q99626 METTL23-215ENST00000615984 1171 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
CDX2Q99626 NECTIN2-202ENST00000252485 2112 ntAPPRIS P3 TSL 1 (best) BASIC21.32■■□□□ 1
CDX2Q99626 LGALS9C-212ENST00000583322 1602 ntAPPRIS ALT1 TSL 5 BASIC21.32■■□□□ 1
CDX2Q99626 ETFA-202ENST00000433983 1346 ntTSL 2 BASIC21.31■■□□□ 1
CDX2Q99626 EID2B-201ENST00000326282 1865 ntAPPRIS P1 BASIC21.31■■□□□ 1
CDX2Q99626 RNF38-205ENST00000377877 1974 ntTSL 2 BASIC21.31■■□□□ 1
CDX2Q99626 TMEM42-201ENST00000302392 1026 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
CDX2Q99626 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC21.31■■□□□ 1
CDX2Q99626 SYNE4-202ENST00000340477 1004 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
CDX2Q99626 PPP1R14BP5-201ENST00000440334 435 ntBASIC21.31■■□□□ 1
CDX2Q99626 Z98884.1-201ENST00000451646 830 ntTSL 3 BASIC21.31■■□□□ 1
CDX2Q99626 HIGD1A-204ENST00000452906 585 ntTSL 2 BASIC21.31■■□□□ 1
CDX2Q99626 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC21.31■■□□□ 1
CDX2Q99626 BUB3-201ENST00000368858 1361 ntAPPRIS ALT1 TSL 1 (best) BASIC21.31■■□□□ 1
CDX2Q99626 GTF3A-201ENST00000381140 1383 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
CDX2Q99626 PGPEP1L-202ENST00000535714 1483 ntTSL 2 BASIC21.31■■□□□ 1
CDX2Q99626 ELP5-204ENST00000396628 1423 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
CDX2Q99626 NHLH1-201ENST00000302101 2563 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CDX2Q99626 PYDC1-201ENST00000302964 813 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CDX2Q99626 AANAT-202ENST00000392492 1005 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CDX2Q99626 TSPY21P-201ENST00000433481 731 ntBASIC21.3■■□□□ 1
CDX2Q99626 AP000347.1-209ENST00000437294 557 ntTSL 4 BASIC21.3■■□□□ 1
CDX2Q99626 TSPY23P-201ENST00000440136 739 ntBASIC21.3■■□□□ 1
CDX2Q99626 HOMER2P1-201ENST00000455653 964 ntBASIC21.3■■□□□ 1
CDX2Q99626 MUC1-212ENST00000457295 1161 ntAPPRIS ALT2 TSL 2 BASIC21.3■■□□□ 1
CDX2Q99626 AL162258.2-202ENST00000469931 831 ntTSL 5 BASIC21.3■■□□□ 1
CDX2Q99626 AC011506.1-201ENST00000474329 610 ntBASIC21.3■■□□□ 1
CDX2Q99626 POLDIP2-201ENST00000540200 2121 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
CDX2Q99626 TARBP2-220ENST00000552857 916 ntTSL 5 BASIC21.3■■□□□ 1
CDX2Q99626 YIPF2-209ENST00000590329 958 ntTSL 5 BASIC21.3■■□□□ 1
CDX2Q99626 AC130371.2-201ENST00000619443 611 ntBASIC21.3■■□□□ 1
CDX2Q99626 CR769767.2-201ENST00000622735 460 ntBASIC21.3■■□□□ 1
CDX2Q99626 ABBA01031674.1-201ENST00000635145 728 ntBASIC21.3■■□□□ 1
CDX2Q99626 FO681492.1-203ENST00000622861 1362 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
CDX2Q99626 CD247-202ENST00000392122 1678 ntAPPRIS ALT1 TSL 1 (best) BASIC21.3■■□□□ 1
CDX2Q99626 ARMC10-204ENST00000425331 2443 ntTSL 2 BASIC21.29■■□□□ 1
CDX2Q99626 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC21.29■■□□□ 1
CDX2Q99626 PTK2-216ENST00000519881 863 ntTSL 3 BASIC21.29■■□□□ 1
CDX2Q99626 TMEM218-206ENST00000527766 812 ntAPPRIS P1 TSL 3 BASIC21.29■■□□□ 1
CDX2Q99626 C17orf62-221ENST00000581196 668 ntTSL 4 BASIC21.29■■□□□ 1
CDX2Q99626 ZNF599-203ENST00000588760 948 ntTSL 2 BASIC21.29■■□□□ 1
CDX2Q99626 SNTA1-201ENST00000217381 2342 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
CDX2Q99626 AC026471.6-201ENST00000622954 1905 ntBASIC21.29■■□□□ 1
CDX2Q99626 AKIRIN1-201ENST00000372984 1330 ntTSL 2 BASIC21.29■■□□□ 1
CDX2Q99626 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC21.29■■□□□ 1
CDX2Q99626 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC21.28■■□□□ 1
CDX2Q99626 SLC1A6-202ENST00000430939 1794 ntTSL 2 BASIC21.28■■□□□ 1
CDX2Q99626 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC21.28■■□□□ 1
CDX2Q99626 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
CDX2Q99626 HIST1H2APS4-201ENST00000362070 348 ntBASIC21.28■■□□□ 1
CDX2Q99626 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC21.28■■□□□ 1
CDX2Q99626 AC002467.1-201ENST00000457510 657 ntTSL 3 BASIC21.28■■□□□ 1
CDX2Q99626 PGAP2-206ENST00000459679 795 ntTSL 2 BASIC21.28■■□□□ 1
CDX2Q99626 FDX2-206ENST00000492239 773 ntTSL 2 BASIC21.28■■□□□ 1
CDX2Q99626 ZNF436-AS1-206ENST00000518821 461 ntTSL 2 BASIC21.28■■□□□ 1
CDX2Q99626 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC21.28■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 14.7 ms