Protein–RNA interactions for Protein: Q96PC3

AP1S3, AP-1 complex subunit sigma-3, humanhuman

Predictions only

Length 154 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
AP1S3Q96PC3 AC010525.1-201ENST00000585559 441 ntBASIC15.21■□□□□ 0.03
AP1S3Q96PC3 PALM-207ENST00000590161 2137 ntTSL 4 BASIC15.21■□□□□ 0.03
AP1S3Q96PC3 AP005212.1-201ENST00000581547 1997 ntBASIC15.21■□□□□ 0.03
AP1S3Q96PC3 TDRD6-201ENST00000316081 6817 ntAPPRIS P3 TSL 1 (best) BASIC15.21■□□□□ 0.03
AP1S3Q96PC3 RAB3A-201ENST00000222256 1528 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.03
AP1S3Q96PC3 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC15.21■□□□□ 0.03
AP1S3Q96PC3 GSG1L-202ENST00000395724 1399 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
AP1S3Q96PC3 TUBGCP3-204ENST00000464139 2461 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
AP1S3Q96PC3 CERS1-202ENST00000542296 1947 ntTSL 1 (best) BASIC15.21■□□□□ 0.02
AP1S3Q96PC3 MYH14-210ENST00000601313 6896 ntAPPRIS ALT2 TSL 1 (best) BASIC15.21■□□□□ 0.02
AP1S3Q96PC3 PGAM5-204ENST00000543955 1773 ntTSL 2 BASIC15.21■□□□□ 0.02
AP1S3Q96PC3 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC15.21■□□□□ 0.02
AP1S3Q96PC3 AC007128.1-201ENST00000424460 1853 ntTSL 5 BASIC15.2■□□□□ 0.02
AP1S3Q96PC3 SOX2-201ENST00000325404 2513 ntAPPRIS P1 BASIC15.2■□□□□ 0.02
AP1S3Q96PC3 IQCE-217ENST00000623361 6775 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
AP1S3Q96PC3 IL17RC-205ENST00000413608 2147 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
AP1S3Q96PC3 DUSP15-201ENST00000278979 1732 ntTSL 2 BASIC15.2■□□□□ 0.02
AP1S3Q96PC3 TRPV3-209ENST00000576742 2766 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
AP1S3Q96PC3 BCKDK-203ENST00000394950 1997 ntTSL 2 BASIC15.2■□□□□ 0.02
AP1S3Q96PC3 SPATS2L-204ENST00000409140 2463 ntAPPRIS P1 TSL 2 BASIC15.2■□□□□ 0.02
AP1S3Q96PC3 FEZF1-203ENST00000442488 2099 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
AP1S3Q96PC3 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC15.2■□□□□ 0.02
AP1S3Q96PC3 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC15.2■□□□□ 0.02
AP1S3Q96PC3 DENND2A-201ENST00000275884 3735 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
AP1S3Q96PC3 GTF3C5-202ENST00000372097 2406 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
AP1S3Q96PC3 TMEM54-201ENST00000329151 871 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
AP1S3Q96PC3 CARD19-201ENST00000375464 855 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
AP1S3Q96PC3 ACYP2-202ENST00000394666 993 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
AP1S3Q96PC3 WDR86-AS1-204ENST00000489632 751 ntTSL 3 BASIC15.2■□□□□ 0.02
AP1S3Q96PC3 ARPC4-208ENST00000498623 942 ntTSL 2 BASIC15.2■□□□□ 0.02
AP1S3Q96PC3 NEURL1B-203ENST00000522853 1263 ntTSL 1 (best) BASIC15.2■□□□□ 0.02
AP1S3Q96PC3 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC15.2■□□□□ 0.02
AP1S3Q96PC3 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
AP1S3Q96PC3 TSKS-202ENST00000358830 1367 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
AP1S3Q96PC3 WISP2-203ENST00000372868 1600 ntAPPRIS P1 TSL 3 BASIC15.2■□□□□ 0.02
AP1S3Q96PC3 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC15.2■□□□□ 0.02
AP1S3Q96PC3 SUMF2-208ENST00000434526 2052 ntAPPRIS P3 TSL 1 (best) BASIC15.2■□□□□ 0.02
AP1S3Q96PC3 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
AP1S3Q96PC3 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
AP1S3Q96PC3 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
AP1S3Q96PC3 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
AP1S3Q96PC3 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
AP1S3Q96PC3 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC15.2■□□□□ 0.02
AP1S3Q96PC3 SIMC1-203ENST00000429602 2694 ntAPPRIS ALT2 TSL 1 (best) BASIC15.2■□□□□ 0.02
AP1S3Q96PC3 CROCC-201ENST00000375541 6656 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
AP1S3Q96PC3 MROH1-201ENST00000326134 5183 ntAPPRIS P3 TSL 5 BASIC15.19■□□□□ 0.02
AP1S3Q96PC3 RGMA-210ENST00000557301 1929 ntAPPRIS ALT2 TSL 2 BASIC15.19■□□□□ 0.02
AP1S3Q96PC3 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
AP1S3Q96PC3 SEMA5B-211ENST00000616742 4933 ntAPPRIS P3 TSL 5 BASIC15.19■□□□□ 0.02
AP1S3Q96PC3 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
AP1S3Q96PC3 LEF1-AS1-207ENST00000512637 1675 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
AP1S3Q96PC3 BPTF-202ENST00000321892 11292 ntAPPRIS ALT2 TSL 5 BASIC15.19■□□□□ 0.02
AP1S3Q96PC3 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC15.19■□□□□ 0.02
AP1S3Q96PC3 SPN-201ENST00000360121 6894 ntAPPRIS P2 TSL 1 (best) BASIC15.19■□□□□ 0.02
AP1S3Q96PC3 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
AP1S3Q96PC3 DPF1-203ENST00000414789 1960 ntTSL 2 BASIC15.19■□□□□ 0.02
AP1S3Q96PC3 THRA-203ENST00000450525 4895 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
AP1S3Q96PC3 PCDHA13-203ENST00000617769 2427 ntAPPRIS ALT2 BASIC15.19■□□□□ 0.02
AP1S3Q96PC3 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
AP1S3Q96PC3 PPFIA3-201ENST00000334186 4733 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
AP1S3Q96PC3 AHDC1-201ENST00000247087 6334 ntAPPRIS P1 TSL 5 BASIC15.19■□□□□ 0.02
AP1S3Q96PC3 SMPD5-201ENST00000528912 1390 ntTSL 5 BASIC15.19■□□□□ 0.02
AP1S3Q96PC3 MLLT10-203ENST00000377072 5126 ntAPPRIS P3 TSL 1 (best) BASIC15.19■□□□□ 0.02
AP1S3Q96PC3 TAOK2-203ENST00000416441 4780 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
AP1S3Q96PC3 ZNF688-203ENST00000563276 1492 ntTSL 2 BASIC15.19■□□□□ 0.02
AP1S3Q96PC3 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC15.19■□□□□ 0.02
AP1S3Q96PC3 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC15.19■□□□□ 0.02
AP1S3Q96PC3 FGF14-IT1-202ENST00000607251 2123 ntTSL 2 BASIC15.19■□□□□ 0.02
AP1S3Q96PC3 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC15.18■□□□□ 0.02
AP1S3Q96PC3 STMN3-201ENST00000370053 2255 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
AP1S3Q96PC3 CHP2-201ENST00000300113 2382 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
AP1S3Q96PC3 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC15.18■□□□□ 0.02
AP1S3Q96PC3 KDM5C-205ENST00000404049 5677 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
AP1S3Q96PC3 TMEM132D-202ENST00000422113 5776 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
AP1S3Q96PC3 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC15.18■□□□□ 0.02
AP1S3Q96PC3 HDAC11-211ENST00000433119 2043 ntTSL 1 (best) BASIC15.18■□□□□ 0.02
AP1S3Q96PC3 MT1E-201ENST00000306061 704 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
AP1S3Q96PC3 PTCHD3P2-201ENST00000424937 1205 ntBASIC15.18■□□□□ 0.02
AP1S3Q96PC3 AP005435.1-201ENST00000529293 1178 ntBASIC15.18■□□□□ 0.02
AP1S3Q96PC3 PABPN1-207ENST00000556821 1220 ntTSL 2 BASIC15.18■□□□□ 0.02
AP1S3Q96PC3 BLCAP-208ENST00000414542 2205 ntAPPRIS P1 TSL 3 BASIC15.18■□□□□ 0.02
AP1S3Q96PC3 MMP9-201ENST00000372330 2336 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
AP1S3Q96PC3 ZNF622-201ENST00000308683 1699 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
AP1S3Q96PC3 NARF-205ENST00000412079 1760 ntTSL 5 BASIC15.18■□□□□ 0.02
AP1S3Q96PC3 FDXR-201ENST00000293195 1875 ntAPPRIS ALT1 TSL 1 (best) BASIC15.18■□□□□ 0.02
AP1S3Q96PC3 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC15.18■□□□□ 0.02
AP1S3Q96PC3 TBX2-201ENST00000240328 3339 ntAPPRIS P1 TSL 1 (best) BASIC15.18■□□□□ 0.02
AP1S3Q96PC3 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC15.18■□□□□ 0.02
AP1S3Q96PC3 C12orf75-208ENST00000612117 1329 ntTSL 1 (best) BASIC15.17■□□□□ 0.02
AP1S3Q96PC3 GSK3B-201ENST00000264235 7711 ntAPPRIS ALT1 TSL 1 (best) BASIC15.17■□□□□ 0.02
AP1S3Q96PC3 GGA2-211ENST00000567468 1713 ntTSL 2 BASIC15.17■□□□□ 0.02
AP1S3Q96PC3 DNM1P51-202ENST00000558801 8752 ntTSL 5 BASIC15.17■□□□□ 0.02
AP1S3Q96PC3 PIK3R2-201ENST00000222254 4033 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
AP1S3Q96PC3 FOXC2-201ENST00000320354 2478 ntAPPRIS P1 BASIC15.17■□□□□ 0.02
AP1S3Q96PC3 CNTNAP3B-212ENST00000617422 2170 ntTSL 2 BASIC15.17■□□□□ 0.02
AP1S3Q96PC3 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC15.17■□□□□ 0.02
AP1S3Q96PC3 SLC43A3-225ENST00000533524 1879 ntAPPRIS ALT2 TSL 2 BASIC15.17■□□□□ 0.02
AP1S3Q96PC3 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC15.17■□□□□ 0.02
AP1S3Q96PC3 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC15.17■□□□□ 0.02
AP1S3Q96PC3 STX5-203ENST00000394690 1568 ntTSL 5 BASIC15.17■□□□□ 0.02
Retrieved 100 of 98,524 protein–RNA pairs in 46.4 ms