Protein–RNA interactions for Protein: Q96N23

CFAP54, Cilia- and flagella-associated protein 54, humanhuman

Predictions only

Length 3,096 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CFAP54Q96N23 KRTCAP3-202ENST00000407293 942 ntTSL 2 BASIC19.9■□□□□ 0.78
CFAP54Q96N23 AC021188.1-201ENST00000421534 740 ntTSL 3 BASIC19.9■□□□□ 0.78
CFAP54Q96N23 HMGN1P19-201ENST00000436976 333 ntBASIC19.9■□□□□ 0.78
CFAP54Q96N23 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC19.9■□□□□ 0.78
CFAP54Q96N23 LY6E-211ENST00000521699 1256 ntAPPRIS P2 TSL 5 BASIC19.9■□□□□ 0.78
CFAP54Q96N23 ST3GAL4-203ENST00000392669 1724 ntAPPRIS ALT1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CFAP54Q96N23 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CFAP54Q96N23 C11orf96-202ENST00000528572 1834 ntBASIC19.9■□□□□ 0.78
CFAP54Q96N23 B3GNT6-202ENST00000622824 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.9■□□□□ 0.78
CFAP54Q96N23 AP000662.2-202ENST00000530595 2790 ntTSL 2 BASIC19.9■□□□□ 0.78
CFAP54Q96N23 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC19.9■□□□□ 0.78
CFAP54Q96N23 AL731557.1-201ENST00000425264 744 ntTSL 3 BASIC19.9■□□□□ 0.78
CFAP54Q96N23 EEF1D-243ENST00000532400 419 ntTSL 3 BASIC19.9■□□□□ 0.78
CFAP54Q96N23 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC19.9■□□□□ 0.78
CFAP54Q96N23 AC068987.1-201ENST00000562996 427 ntTSL 3 BASIC19.9■□□□□ 0.78
CFAP54Q96N23 DUX4-205ENST00000570263 768 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CFAP54Q96N23 CDKN1C-204ENST00000440480 1811 ntAPPRIS ALT2 TSL 1 (best) BASIC19.9■□□□□ 0.78
CFAP54Q96N23 IER3-202ENST00000376377 1350 ntBASIC19.9■□□□□ 0.78
CFAP54Q96N23 AC004980.1-201ENST00000418663 2667 ntTSL 1 (best) BASIC19.9■□□□□ 0.78
CFAP54Q96N23 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC19.89■□□□□ 0.78
CFAP54Q96N23 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
CFAP54Q96N23 DACT3-201ENST00000300875 2526 ntTSL 1 (best) BASIC19.89■□□□□ 0.78
CFAP54Q96N23 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC19.89■□□□□ 0.78
CFAP54Q96N23 AL022342.1-201ENST00000400363 863 ntBASIC19.89■□□□□ 0.78
CFAP54Q96N23 CAPG-203ENST00000409670 1183 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.78
CFAP54Q96N23 AP002433.1-201ENST00000525548 964 ntTSL 3 BASIC19.89■□□□□ 0.78
CFAP54Q96N23 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC19.89■□□□□ 0.78
CFAP54Q96N23 AC008878.2-201ENST00000601870 942 ntAPPRIS P1 TSL 4 BASIC19.89■□□□□ 0.78
CFAP54Q96N23 AC008622.2-201ENST00000617006 1229 ntBASIC19.89■□□□□ 0.78
CFAP54Q96N23 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
CFAP54Q96N23 RNPEP-201ENST00000295640 2427 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.78
CFAP54Q96N23 MAZ-201ENST00000219782 2698 ntAPPRIS P4 TSL 1 (best) BASIC19.89■□□□□ 0.77
CFAP54Q96N23 DUSP9-201ENST00000342782 2433 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CFAP54Q96N23 DXO-201ENST00000337523 1628 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CFAP54Q96N23 FAM182B-202ENST00000376404 456 ntAPPRIS ALT2 BASIC19.89■□□□□ 0.77
CFAP54Q96N23 AC114763.1-202ENST00000414911 867 ntTSL 3 BASIC19.89■□□□□ 0.77
CFAP54Q96N23 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC19.89■□□□□ 0.77
CFAP54Q96N23 AL117335.1-203ENST00000619200 948 ntTSL 5 BASIC19.89■□□□□ 0.77
CFAP54Q96N23 CKS1B-203ENST00000368439 912 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CFAP54Q96N23 TSPY5P-201ENST00000426936 936 ntBASIC19.89■□□□□ 0.77
CFAP54Q96N23 LINC01237-203ENST00000430555 843 ntTSL 4 BASIC19.89■□□□□ 0.77
CFAP54Q96N23 AC035140.1-201ENST00000507957 493 ntTSL 3 BASIC19.89■□□□□ 0.77
CFAP54Q96N23 TOP1MT-201ENST00000329245 1958 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CFAP54Q96N23 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC19.89■□□□□ 0.77
CFAP54Q96N23 RAX2-202ENST00000555978 2145 ntAPPRIS P1 TSL 1 (best) BASIC19.89■□□□□ 0.77
CFAP54Q96N23 SEPT8-207ENST00000378719 2889 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CFAP54Q96N23 PLEKHO1-201ENST00000369124 2050 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CFAP54Q96N23 RAB42-202ENST00000465518 857 ntAPPRIS P1 TSL 2 BASIC19.88■□□□□ 0.77
CFAP54Q96N23 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC19.88■□□□□ 0.77
CFAP54Q96N23 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC19.88■□□□□ 0.77
CFAP54Q96N23 PSMD6-201ENST00000295901 1430 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CFAP54Q96N23 C6orf136-203ENST00000376473 1402 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CFAP54Q96N23 NBPF21P-201ENST00000425093 1451 ntBASIC19.88■□□□□ 0.77
CFAP54Q96N23 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC19.88■□□□□ 0.77
CFAP54Q96N23 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.77
CFAP54Q96N23 SAPCD2P1-201ENST00000395413 1184 ntBASIC19.88■□□□□ 0.77
CFAP54Q96N23 AC010542.4-201ENST00000563151 1910 ntBASIC19.88■□□□□ 0.77
CFAP54Q96N23 LINC02084-201ENST00000606069 1096 ntBASIC19.88■□□□□ 0.77
CFAP54Q96N23 AC012313.10-201ENST00000623509 926 ntBASIC19.88■□□□□ 0.77
CFAP54Q96N23 POLR2J3-220ENST00000613744 2096 ntAPPRIS ALT2 TSL 1 (best) BASIC19.88■□□□□ 0.77
CFAP54Q96N23 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CFAP54Q96N23 AC092053.2-201ENST00000640557 1818 ntBASIC19.87■□□□□ 0.77
CFAP54Q96N23 EGR3-203ENST00000519492 1500 ntTSL 5 BASIC19.87■□□□□ 0.77
CFAP54Q96N23 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC19.87■□□□□ 0.77
CFAP54Q96N23 LCN10-205ENST00000497771 723 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CFAP54Q96N23 AC079089.2-201ENST00000531211 1277 ntBASIC19.87■□□□□ 0.77
CFAP54Q96N23 AC125616.1-201ENST00000540369 1015 ntTSL 3 BASIC19.87■□□□□ 0.77
CFAP54Q96N23 AC117500.4-201ENST00000542797 617 ntTSL 3 BASIC19.87■□□□□ 0.77
CFAP54Q96N23 AC104532.1-201ENST00000588891 580 ntAPPRIS P1 TSL 4 BASIC19.87■□□□□ 0.77
CFAP54Q96N23 SLC19A1-209ENST00000485649 1896 ntAPPRIS ALT2 TSL 2 BASIC19.87■□□□□ 0.77
CFAP54Q96N23 NEURL3-201ENST00000310865 1710 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CFAP54Q96N23 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CFAP54Q96N23 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC19.87■□□□□ 0.77
CFAP54Q96N23 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC19.87■□□□□ 0.77
CFAP54Q96N23 RANBP10-206ENST00000602677 2374 ntTSL 5 BASIC19.87■□□□□ 0.77
CFAP54Q96N23 APIP-201ENST00000395787 1366 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CFAP54Q96N23 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC19.87■□□□□ 0.77
CFAP54Q96N23 BIK-201ENST00000216115 953 ntAPPRIS P1 TSL 1 (best) BASIC19.87■□□□□ 0.77
CFAP54Q96N23 IGLL1-201ENST00000249053 716 ntTSL 1 (best) BASIC19.87■□□□□ 0.77
CFAP54Q96N23 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC19.87■□□□□ 0.77
CFAP54Q96N23 DYNLRB1-203ENST00000374846 1044 ntTSL 5 BASIC19.87■□□□□ 0.77
CFAP54Q96N23 AC133065.2-201ENST00000573379 2147 ntTSL 2 BASIC19.87■□□□□ 0.77
CFAP54Q96N23 AC130371.2-201ENST00000619443 611 ntBASIC19.87■□□□□ 0.77
CFAP54Q96N23 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CFAP54Q96N23 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC19.86■□□□□ 0.77
CFAP54Q96N23 TMEM234-203ENST00000373593 1411 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CFAP54Q96N23 KRT16P1-201ENST00000399124 1418 ntBASIC19.86■□□□□ 0.77
CFAP54Q96N23 THRA-209ENST00000584985 2421 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CFAP54Q96N23 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC19.86■□□□□ 0.77
CFAP54Q96N23 PRLHR-202ENST00000636925 1275 ntAPPRIS P1 BASIC19.86■□□□□ 0.77
CFAP54Q96N23 STRBP-202ENST00000360998 2990 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CFAP54Q96N23 ECE2-202ENST00000357474 2667 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CFAP54Q96N23 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
CFAP54Q96N23 GCA-201ENST00000233612 1694 ntTSL 2 BASIC19.86■□□□□ 0.77
CFAP54Q96N23 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC19.86■□□□□ 0.77
CFAP54Q96N23 NDUFS7-201ENST00000233627 1039 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.77
CFAP54Q96N23 AC073343.2-203ENST00000366167 564 ntTSL 4 BASIC19.86■□□□□ 0.77
CFAP54Q96N23 TREX2-204ENST00000370212 861 ntTSL 5 BASIC19.86■□□□□ 0.77
CFAP54Q96N23 DDR1-228ENST00000376575 732 ntTSL 1 (best) BASIC19.86■□□□□ 0.77
CFAP54Q96N23 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC19.86■□□□□ 0.77
Retrieved 100 of 98,524 protein–RNA pairs in 17.5 ms