Protein–RNA interactions for Protein: Q92900

UPF1, Regulator of nonsense transcripts 1, humanhuman

Known RBP eCLIP

Length 1,129 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1Q92900 TCEANC2-201ENST00000234827 10436 ntAPPRIS P1 TSL 1 (best) BASIC6.69□□□□□ -1.347e-6■■■■□ 24.4
UPF1Q92900 ZNF850-202ENST00000591344 7714 ntAPPRIS P3 TSL 1 (best) BASIC6.37□□□□□ -1.397e-6■■■■□ 24.4
UPF1Q92900 ZNF850-203ENST00000614887 7625 ntAPPRIS ALT2 TSL 1 (best) BASIC5.87□□□□□ -1.477e-6■■■■□ 24.4
UPF1Q92900 LDAH-211ENST00000541941 3807 ntTSL 2 BASIC5.56□□□□□ -1.527e-6■■■■□ 24.4
UPF1Q92900 GPATCH2L-214ENST00000621494 12396 ntAPPRIS P1 TSL 2 BASIC5.04□□□□□ -1.67e-6■■■■□ 24.4
UPF1Q92900 SUGT1-201ENST00000310528 14131 ntAPPRIS P3 TSL 1 (best) BASIC4.05□□□□□ -1.767e-6■■■■□ 24.4
UPF1Q92900 KAT2A-203ENST00000586972 852 ntTSL 227.24■■□□□ 1.952e-9■■■■□ 24.4
UPF1Q92900 KAT2A-201ENST00000225916 3109 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.292e-9■■■■□ 24.4
UPF1Q92900 KAT2A-202ENST00000465682 2990 ntTSL 513.45□□□□□ -0.262e-9■■■■□ 24.4
UPF1Q92900 AL136295.3-201ENST00000558325 850 ntAPPRIS P1 TSL 5 BASIC18.01■□□□□ 0.473e-10■■■■□ 24.4
UPF1Q92900 DCAF11-217ENST00000559115 2711 ntAPPRIS P1 TSL 1 (best) BASIC15.71■□□□□ 0.113e-10■■■■□ 24.4
UPF1Q92900 DCAF11-203ENST00000396941 2402 ntTSL 2 BASIC14.68□□□□□ -0.063e-10■■■■□ 24.4
UPF1Q92900 DCAF11-202ENST00000396936 2469 ntTSL 1 (best) BASIC13.98□□□□□ -0.173e-10■■■■□ 24.4
UPF1Q92900 DCAF11-212ENST00000558624 2627 ntTSL 213.11□□□□□ -0.313e-10■■■■□ 24.4
UPF1Q92900 DCAF11-205ENST00000557802 4202 ntTSL 1 (best)12.51□□□□□ -0.413e-10■■■■□ 24.4
UPF1Q92900 DCAF11-204ENST00000446197 4299 ntAPPRIS P1 TSL 1 (best) BASIC12.29□□□□□ -0.443e-10■■■■□ 24.4
UPF1Q92900 DCAF11-201ENST00000326009 2570 ntTSL 1 (best)12.1□□□□□ -0.473e-10■■■■□ 24.4
UPF1Q92900 AC015688.5-201ENST00000584605 603 ntAPPRIS P5 TSL 2 BASIC17.74■□□□□ 0.431e-7■■■■□ 24.4
UPF1Q92900 AC015688.5-202ENST00000579290 532 ntAPPRIS ALT2 TSL 213.39□□□□□ -0.271e-7■■■■□ 24.4
UPF1Q92900 KSR1-204ENST00000398988 7237 ntAPPRIS P2 TSL 5 BASIC13.33□□□□□ -0.281e-7■■■■□ 24.4
UPF1Q92900 TOR1AIP1-201ENST00000271583 3044 ntAPPRIS ALT2 TSL 5 BASIC14.11□□□□□ -0.151e-6■■■■□ 24.4
UPF1Q92900 TOR1AIP1-208ENST00000528443 3685 ntAPPRIS ALT2 TSL 2 BASIC12.75□□□□□ -0.372e-6■■■■□ 24.4
UPF1Q92900 TOR1AIP1-212ENST00000606911 8704 ntAPPRIS P3 TSL 1 (best) BASIC11.68□□□□□ -0.543e-6■■■■□ 24.4
UPF1Q92900 TOR1AIP1-202ENST00000435319 3397 ntAPPRIS ALT2 TSL 1 (best) BASIC8□□□□□ -1.133e-6■■■■□ 24.4
UPF1Q92900 ARRDC2-202ENST00000379656 2528 ntTSL 2 BASIC22.01■■□□□ 1.116e-8■■■■□ 24.4
UPF1Q92900 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC19.24■□□□□ 0.676e-8■■■■□ 24.4
UPF1Q92900 ARRDC2-203ENST00000593460 3748 ntTSL 215.42■□□□□ 0.066e-8■■■■□ 24.4
UPF1Q92900 TM4SF19-TCTEX1D2-201ENST00000442633 964 ntAPPRIS P1 TSL 1 (best) BASIC24.95■■□□□ 1.582e-6■■■■□ 24.4
UPF1Q92900 TM4SF19-203ENST00000446879 1582 ntTSL 1 (best) BASIC18.68■□□□□ 0.582e-6■■■■□ 24.4
UPF1Q92900 CAMK2G-202ENST00000322635 3720 ntTSL 1 (best) BASIC10.27□□□□□ -0.776e-7■■■■□ 24.3
UPF1Q92900 CAMK2G-204ENST00000351293 3563 ntAPPRIS P1 TSL 5 BASIC10.25□□□□□ -0.776e-7■■■■□ 24.3
UPF1Q92900 CAMK2G-206ENST00000394762 3767 ntTSL 1 (best) BASIC10.22□□□□□ -0.776e-7■■■■□ 24.3
UPF1Q92900 CAMK2G-207ENST00000423381 3824 ntTSL 5 BASIC10.15□□□□□ -0.796e-7■■■■□ 24.3
UPF1Q92900 CAMK2G-203ENST00000322680 3818 ntTSL 5 BASIC10.08□□□□□ -0.86e-7■■■■□ 24.3
UPF1Q92900 CASP3-201ENST00000308394 2673 ntAPPRIS P1 TSL 1 (best) BASIC12.81□□□□□ -0.363e-8■■■■□ 24.3
UPF1Q92900 CASP3-206ENST00000523916 2540 ntAPPRIS P1 TSL 1 (best) BASIC12.61□□□□□ -0.393e-8■■■■□ 24.3
UPF1Q92900 CASP3-202ENST00000393585 2624 ntTSL 1 (best) BASIC12.22□□□□□ -0.453e-8■■■■□ 24.3
UPF1Q92900 SLC5A9-205ENST00000471020 1989 ntTSL 1 (best)18.3■□□□□ 0.523e-10■■■■□ 24.3
UPF1Q92900 SLC5A9-203ENST00000438567 3195 ntAPPRIS P3 TSL 1 (best) BASIC13.04□□□□□ -0.323e-10■■■■□ 24.3
UPF1Q92900 SLC5A9-206ENST00000493837 3769 ntTSL 211.48□□□□□ -0.573e-10■■■■□ 24.3
UPF1Q92900 SLC5A9-201ENST00000236495 3272 ntAPPRIS ALT2 TSL 1 (best) BASIC9.8□□□□□ -0.843e-10■■■■□ 24.3
UPF1Q92900 KDM2A-212ENST00000530342 3651 ntTSL 1 (best) BASIC11.7□□□□□ -0.549e-9■■■■□ 24.3
UPF1Q92900 KDM2A-213ENST00000531696 4160 ntTSL 510.71□□□□□ -0.699e-9■■■■□ 24.3
UPF1Q92900 MCM4-201ENST00000262105 4183 ntAPPRIS P1 TSL 1 (best) BASIC17.42■□□□□ 0.386e-18■■■■□ 24.3
UPF1Q92900 MCM4-215ENST00000523944 4105 ntAPPRIS P1 TSL 2 BASIC12.82□□□□□ -0.366e-18■■■■□ 24.3
UPF1Q92900 ARFGAP2-227ENST00000533243 1558 ntTSL 226.37■■□□□ 1.817e-9■■■■□ 24.3
UPF1Q92900 FBXL16-203ENST00000562563 2257 ntTSL 2 BASIC22.84■■□□□ 1.255e-6■■■■□ 24.3
UPF1Q92900 DENND6A-201ENST00000311128 4655 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.85e-6■■■■□ 24.3
UPF1Q92900 KANSL3-217ENST00000484020 438 ntTSL 219.67■□□□□ 0.742e-6■■■■□ 24.3
UPF1Q92900 KANSL3-216ENST00000481986 546 ntTSL 418.56■□□□□ 0.562e-6■■■■□ 24.3
UPF1Q92900 AGTRAP-206ENST00000452018 809 ntTSL 2 BASIC21.33■■□□□ 1.014e-7■■■■□ 24.3
UPF1Q92900 AGTRAP-208ENST00000476309 748 ntTSL 320.45■□□□□ 0.864e-7■■■■□ 24.3
UPF1Q92900 MESD-202ENST00000422879 1392 ntTSL 222.88■■□□□ 1.255e-7■■■■□ 24.3
UPF1Q92900 MESD-203ENST00000559537 539 ntTSL 416.81■□□□□ 0.285e-7■■■■□ 24.3
UPF1Q92900 MESD-204ENST00000560189 936 ntTSL 514.94□□□□□ -0.025e-7■■■■□ 24.3
UPF1Q92900 MESD-201ENST00000261758 4264 ntAPPRIS P1 TSL 1 (best) BASIC13.84□□□□□ -0.195e-7■■■■□ 24.3
UPF1Q92900 MESD-206ENST00000561312 2938 ntAPPRIS P1 TSL 1 (best) BASIC13.73□□□□□ -0.215e-7■■■■□ 24.3
UPF1Q92900 MESD-207ENST00000619987 3978 ntTSL 1 (best)11.73□□□□□ -0.535e-7■■■■□ 24.3
UPF1Q92900 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC28.55■■■□□ 2.166e-16■■■■□ 24.3
UPF1Q92900 HIGD1A-201ENST00000321331 1373 ntAPPRIS P1 TSL 1 (best) BASIC27.34■■□□□ 1.976e-16■■■■□ 24.3
UPF1Q92900 HIGD1A-202ENST00000418900 1322 ntAPPRIS P1 TSL 2 BASIC20.97■□□□□ 0.956e-16■■■■□ 24.3
UPF1Q92900 HIGD1A-205ENST00000470543 983 ntTSL 219.45■□□□□ 0.77e-16■■■■□ 24.3
UPF1Q92900 MYH10-202ENST00000360416 7762 ntTSL 1 (best) BASIC10.58□□□□□ -0.725e-7■■■■□ 24.3
UPF1Q92900 MYH10-201ENST00000269243 7662 ntAPPRIS P1 TSL 1 (best) BASIC9.9□□□□□ -0.825e-7■■■■□ 24.3
UPF1Q92900 MYH10-203ENST00000379980 7694 ntTSL 1 (best) BASIC9.9□□□□□ -0.825e-7■■■■□ 24.3
UPF1Q92900 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC28.47■■■□□ 2.159e-7■■■■□ 24.2
UPF1Q92900 C10orf76-204ENST00000470043 694 ntTSL 313.88□□□□□ -0.199e-7■■■■□ 24.2
UPF1Q92900 ZBTB40-204ENST00000404138 8992 ntAPPRIS P3 TSL 5 BASIC9.35□□□□□ -0.912e-6■■■■□ 24.2
UPF1Q92900 ZBTB40-201ENST00000374651 8368 ntAPPRIS ALT2 TSL 1 (best) BASIC8.88□□□□□ -0.992e-6■■■■□ 24.2
UPF1Q92900 ZBTB40-202ENST00000375647 8685 ntAPPRIS P3 TSL 1 (best) BASIC8.88□□□□□ -0.992e-6■■■■□ 24.2
UPF1Q92900 RRP1B-201ENST00000340648 5090 ntAPPRIS P1 TSL 1 (best) BASIC14.47□□□□□ -0.091e-8■■■■□ 24.2
UPF1Q92900 RRP1B-202ENST00000470886 4634 ntTSL 210.33□□□□□ -0.761e-8■■■■□ 24.2
UPF1Q92900 NGFR-201ENST00000172229 3417 ntAPPRIS P1 TSL 1 (best) BASIC16.73■□□□□ 0.274e-6■■■■□ 24.2
UPF1Q92900 CTDSP2-201ENST00000398073 4795 ntAPPRIS P1 TSL 1 (best) BASIC16.13■□□□□ 0.173e-8■■■■□ 24.2
UPF1Q92900 TMEM189-205ENST00000453505 2028 ntTSL 1 (best)22.41■■□□□ 1.181e-7■■■■□ 24.2
UPF1Q92900 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC22.03■■□□□ 1.121e-7■■■■□ 24.2
UPF1Q92900 TMEM189-203ENST00000371656 1973 ntTSL 2 BASIC19.05■□□□□ 0.641e-7■■■■□ 24.2
UPF1Q92900 TMEM189-UBE2V1-201ENST00000341698 2757 ntAPPRIS P1 TSL 1 (best) BASIC16.42■□□□□ 0.221e-7■■■■□ 24.2
UPF1Q92900 TMEM189-202ENST00000371652 7714 ntAPPRIS P3 TSL 1 (best) BASIC14.09□□□□□ -0.151e-7■■■■□ 24.2
UPF1Q92900 NLGN2-203ENST00000572893 305 ntTSL 332.93■■■□□ 2.861e-9■■■■□ 24.2
UPF1Q92900 FBXO17-202ENST00000595329 1299 ntAPPRIS P1 TSL 2 BASIC27.97■■■□□ 2.073e-6■■■■□ 24.2
UPF1Q92900 CMTM3-207ENST00000564060 824 ntTSL 2 BASIC27.76■■■□□ 2.034e-8■■■■□ 24.2
UPF1Q92900 AMPD2-210ENST00000476688 1111 ntTSL 326.25■■□□□ 1.792e-6■■■■□ 24.2
UPF1Q92900 ZCCHC24-201ENST00000372333 906 ntTSL 2 BASIC25.79■■□□□ 1.724e-6■■■■□ 24.2
UPF1Q92900 MAPKAP1-220ENST00000497932 1495 ntTSL 1 (best)25.7■■□□□ 1.72e-6■■■■□ 24.2
UPF1Q92900 AC099568.2-201ENST00000609194 695 ntBASIC22.88■■□□□ 1.253e-6■■■■□ 24.2
UPF1Q92900 CALML4-206ENST00000467889 987 ntAPPRIS P1 TSL 1 (best) BASIC22.08■■□□□ 1.133e-6■■■■□ 24.2
UPF1Q92900 ATP5S-203ENST00000358473 801 ntTSL 1 (best) BASIC20.23■□□□□ 0.833e-6■■■■□ 24.2
UPF1Q92900 RNASEH1-201ENST00000315212 1887 ntAPPRIS P1 TSL 1 (best) BASIC20.22■□□□□ 0.833e-6■■■■□ 24.2
UPF1Q92900 MAPKAP1-216ENST00000473837 1032 ntTSL 1 (best)19.74■□□□□ 0.753e-6■■■■□ 24.2
UPF1Q92900 AATK-204ENST00000570932 2108 ntTSL 219.66■□□□□ 0.743e-6■■■■□ 24.2
UPF1Q92900 AC004466.1-201ENST00000599515 1080 ntBASIC19.59■□□□□ 0.733e-6■■■■□ 24.2
UPF1Q92900 AATK-202ENST00000374792 4938 ntTSL 219.59■□□□□ 0.733e-6■■■■□ 24.2
UPF1Q92900 PIP5K1C-201ENST00000335312 5080 ntAPPRIS P3 TSL 1 (best) BASIC19.54■□□□□ 0.724e-6■■■■□ 24.2
UPF1Q92900 AATK-203ENST00000417379 5081 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.693e-6■■■■□ 24.2
UPF1Q92900 CALML4-202ENST00000395463 1445 ntTSL 1 (best)19.31■□□□□ 0.683e-6■■■■□ 24.2
UPF1Q92900 ATP5S-207ENST00000554438 2008 ntTSL 218.96■□□□□ 0.633e-6■■■■□ 24.2
UPF1Q92900 UBE3C-201ENST00000348165 5229 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.583e-6■■■■□ 24.2
UPF1Q92900 ZPR1-204ENST00000429220 2364 ntTSL 518.6■□□□□ 0.573e-6■■■■□ 24.2
UPF1Q92900 FBXO17-205ENST00000599418 2222 ntTSL 218.25■□□□□ 0.513e-6■■■■□ 24.2
Retrieved 100 of 15,879 protein–RNA pairs in 134.4 ms