Protein–RNA interactions for Protein: Q8NDV3

SMC1B, Structural maintenance of chromosomes protein 1B, humanhuman

Predictions only

Length 1,235 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1BQ8NDV3 CATIP-AS1-202ENST00000441749 480 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
SMC1BQ8NDV3 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC24.09■■□□□ 1.45
SMC1BQ8NDV3 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC24.09■■□□□ 1.45
SMC1BQ8NDV3 GPX4-207ENST00000589115 812 ntTSL 2 BASIC24.09■■□□□ 1.45
SMC1BQ8NDV3 TXNL4A-211ENST00000592837 611 ntTSL 2 BASIC24.09■■□□□ 1.45
SMC1BQ8NDV3 KLK8-205ENST00000593490 267 ntTSL 3 BASIC24.09■■□□□ 1.45
SMC1BQ8NDV3 GPX4-210ENST00000611653 793 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
SMC1BQ8NDV3 AL031985.4-201ENST00000642138 673 ntBASIC24.09■■□□□ 1.45
SMC1BQ8NDV3 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC24.09■■□□□ 1.45
SMC1BQ8NDV3 KLC3-202ENST00000470402 1820 ntTSL 1 (best) BASIC24.09■■□□□ 1.45
SMC1BQ8NDV3 DCAKD-208ENST00000614054 2054 ntAPPRIS P1 TSL 2 BASIC24.09■■□□□ 1.45
SMC1BQ8NDV3 AL445686.2-201ENST00000577528 1445 ntTSL 3 BASIC24.09■■□□□ 1.45
SMC1BQ8NDV3 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
SMC1BQ8NDV3 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC24.08■■□□□ 1.45
SMC1BQ8NDV3 THOC3-201ENST00000265097 1589 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.45
SMC1BQ8NDV3 RAB40B-201ENST00000269347 2189 ntTSL 2 BASIC24.08■■□□□ 1.45
SMC1BQ8NDV3 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC24.08■■□□□ 1.45
SMC1BQ8NDV3 PRR31-201ENST00000371629 978 ntTSL 2 BASIC24.08■■□□□ 1.45
SMC1BQ8NDV3 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC24.08■■□□□ 1.45
SMC1BQ8NDV3 SAAL1-204ENST00000529318 1503 ntAPPRIS ALT1 TSL 5 BASIC24.08■■□□□ 1.45
SMC1BQ8NDV3 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC24.08■■□□□ 1.45
SMC1BQ8NDV3 ARL2-SNX15-201ENST00000301886 2392 ntAPPRIS P1 TSL 2 BASIC24.08■■□□□ 1.44
SMC1BQ8NDV3 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.44
SMC1BQ8NDV3 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC24.08■■□□□ 1.44
SMC1BQ8NDV3 TBL2-222ENST00000610724 2165 ntTSL 5 BASIC24.08■■□□□ 1.44
SMC1BQ8NDV3 EZH2-208ENST00000483967 2466 ntAPPRIS ALT1 TSL 2 BASIC24.07■■□□□ 1.44
SMC1BQ8NDV3 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC24.07■■□□□ 1.44
SMC1BQ8NDV3 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC24.07■■□□□ 1.44
SMC1BQ8NDV3 YWHAZ-204ENST00000395953 994 ntAPPRIS P1 TSL 5 BASIC24.07■■□□□ 1.44
SMC1BQ8NDV3 PVRIG2P-201ENST00000435460 978 ntBASIC24.07■■□□□ 1.44
SMC1BQ8NDV3 AC098864.1-204ENST00000513752 805 ntTSL 4 BASIC24.07■■□□□ 1.44
SMC1BQ8NDV3 AC023511.2-201ENST00000618803 211 ntBASIC24.07■■□□□ 1.44
SMC1BQ8NDV3 AL138966.2-201ENST00000621997 464 ntBASIC24.07■■□□□ 1.44
SMC1BQ8NDV3 AC004816.2-201ENST00000622856 284 ntTSL 5 BASIC24.07■■□□□ 1.44
SMC1BQ8NDV3 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC24.07■■□□□ 1.44
SMC1BQ8NDV3 FOXA2-201ENST00000377115 2401 ntAPPRIS P3 TSL 1 (best) BASIC24.06■■□□□ 1.44
SMC1BQ8NDV3 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC24.06■■□□□ 1.44
SMC1BQ8NDV3 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC24.06■■□□□ 1.44
SMC1BQ8NDV3 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC24.06■■□□□ 1.44
SMC1BQ8NDV3 KLK14-201ENST00000156499 1060 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
SMC1BQ8NDV3 INGX-201ENST00000359239 846 ntBASIC24.06■■□□□ 1.44
SMC1BQ8NDV3 TMEM243-203ENST00000433078 1273 ntAPPRIS P1 TSL 2 BASIC24.06■■□□□ 1.44
SMC1BQ8NDV3 AP000347.1-202ENST00000435868 847 ntBASIC24.06■■□□□ 1.44
SMC1BQ8NDV3 RNF165-206ENST00000590330 1049 ntTSL 2 BASIC24.06■■□□□ 1.44
SMC1BQ8NDV3 AC069148.1-201ENST00000608741 768 ntBASIC24.06■■□□□ 1.44
SMC1BQ8NDV3 DGCR10-201ENST00000609839 495 ntBASIC24.06■■□□□ 1.44
SMC1BQ8NDV3 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
SMC1BQ8NDV3 SETD7-202ENST00000404104 1590 ntTSL 2 BASIC24.06■■□□□ 1.44
SMC1BQ8NDV3 ATPAF2-206ENST00000474627 1564 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
SMC1BQ8NDV3 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC24.06■■□□□ 1.44
SMC1BQ8NDV3 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC24.06■■□□□ 1.44
SMC1BQ8NDV3 MAGI2-202ENST00000419488 6800 ntAPPRIS ALT2 TSL 1 (best) BASIC24.06■■□□□ 1.44
SMC1BQ8NDV3 AUTS2-203ENST00000406775 5950 ntAPPRIS ALT2 TSL 1 (best) BASIC24.06■■□□□ 1.44
SMC1BQ8NDV3 RARA-202ENST00000394081 2285 ntTSL 1 (best) BASIC24.05■■□□□ 1.44
SMC1BQ8NDV3 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
SMC1BQ8NDV3 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC24.05■■□□□ 1.44
SMC1BQ8NDV3 AC091230.1-202ENST00000564823 5356 ntTSL 2 BASIC24.05■■□□□ 1.44
SMC1BQ8NDV3 AGBL5-201ENST00000323064 2382 ntAPPRIS ALT2 TSL 1 (best) BASIC24.05■■□□□ 1.44
SMC1BQ8NDV3 GPR32-201ENST00000270590 1269 ntAPPRIS P1 BASIC24.05■■□□□ 1.44
SMC1BQ8NDV3 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC24.05■■□□□ 1.44
SMC1BQ8NDV3 DYNLT3-203ENST00000432389 719 ntTSL 5 BASIC24.05■■□□□ 1.44
SMC1BQ8NDV3 KRT18P16-201ENST00000510337 1294 ntBASIC24.05■■□□□ 1.44
SMC1BQ8NDV3 IFI27L2-206ENST00000556727 556 ntTSL 3 BASIC24.05■■□□□ 1.44
SMC1BQ8NDV3 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC24.05■■□□□ 1.44
SMC1BQ8NDV3 SMIM22-203ENST00000588500 525 ntAPPRIS ALT2 TSL 1 (best) BASIC24.05■■□□□ 1.44
SMC1BQ8NDV3 ZNF534-205ENST00000617900 1085 ntTSL 2 BASIC24.05■■□□□ 1.44
SMC1BQ8NDV3 ASAH1-251ENST00000637561 929 ntTSL 2 BASIC24.05■■□□□ 1.44
SMC1BQ8NDV3 ABHD8-201ENST00000247706 2090 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
SMC1BQ8NDV3 NARF-205ENST00000412079 1760 ntTSL 5 BASIC24.05■■□□□ 1.44
SMC1BQ8NDV3 SLC30A3-201ENST00000233535 2260 ntAPPRIS P1 TSL 1 (best) BASIC24.05■■□□□ 1.44
SMC1BQ8NDV3 RNASEH2C-203ENST00000528220 1337 ntTSL 2 BASIC24.05■■□□□ 1.44
SMC1BQ8NDV3 FRS3-202ENST00000373018 2174 ntAPPRIS P1 TSL 3 BASIC24.05■■□□□ 1.44
SMC1BQ8NDV3 IQCD-203ENST00000546692 1872 ntTSL 5 BASIC24.04■■□□□ 1.44
SMC1BQ8NDV3 KCTD5-201ENST00000301738 2482 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
SMC1BQ8NDV3 GBX2-201ENST00000306318 2123 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
SMC1BQ8NDV3 MIR210HG-201ENST00000500447 1965 ntTSL 2 BASIC24.04■■□□□ 1.44
SMC1BQ8NDV3 NFE2L3P1-201ENST00000588207 1959 ntBASIC24.04■■□□□ 1.44
SMC1BQ8NDV3 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
SMC1BQ8NDV3 SMYD3-204ENST00000403792 1209 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
SMC1BQ8NDV3 MESTP1-201ENST00000404287 994 ntBASIC24.04■■□□□ 1.44
SMC1BQ8NDV3 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC24.04■■□□□ 1.44
SMC1BQ8NDV3 COX11P1-201ENST00000489116 835 ntBASIC24.04■■□□□ 1.44
SMC1BQ8NDV3 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC24.04■■□□□ 1.44
SMC1BQ8NDV3 TRAF3IP2-AS1-208ENST00000525151 609 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
SMC1BQ8NDV3 PSMD9-208ENST00000542602 516 ntTSL 3 BASIC24.04■■□□□ 1.44
SMC1BQ8NDV3 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC24.04■■□□□ 1.44
SMC1BQ8NDV3 RPIA-201ENST00000283646 1848 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
SMC1BQ8NDV3 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
SMC1BQ8NDV3 AC006455.5-202ENST00000615248 2284 ntTSL 1 (best) BASIC24.04■■□□□ 1.44
SMC1BQ8NDV3 CAMK2N1-201ENST00000375078 2336 ntAPPRIS P1 TSL 1 (best) BASIC24.04■■□□□ 1.44
SMC1BQ8NDV3 SRPK3-202ENST00000370101 1958 ntAPPRIS P3 TSL 1 (best) BASIC24.03■■□□□ 1.44
SMC1BQ8NDV3 AC092053.2-201ENST00000640557 1818 ntBASIC24.03■■□□□ 1.44
SMC1BQ8NDV3 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC24.03■■□□□ 1.44
SMC1BQ8NDV3 ITM2C-203ENST00000335005 1889 ntTSL 1 (best) BASIC24.03■■□□□ 1.44
SMC1BQ8NDV3 B4GALNT1-202ENST00000418555 1861 ntTSL 2 BASIC24.03■■□□□ 1.44
SMC1BQ8NDV3 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC24.03■■□□□ 1.44
SMC1BQ8NDV3 FDX1P1-201ENST00000449115 551 ntBASIC24.03■■□□□ 1.44
SMC1BQ8NDV3 C17orf49-208ENST00000552402 760 ntTSL 2 BASIC24.03■■□□□ 1.44
SMC1BQ8NDV3 FFAR4-203ENST00000604414 1142 ntTSL 3 BASIC24.03■■□□□ 1.44
SMC1BQ8NDV3 AC012313.10-201ENST00000623509 926 ntBASIC24.03■■□□□ 1.44
Retrieved 100 of 98,524 protein–RNA pairs in 27.1 ms