Protein–RNA interactions for Protein: Q8N4M1

SLC44A3, Choline transporter-like protein 3, humanhuman

Predictions only

Length 653 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SLC44A3Q8N4M1 ARMC6-201ENST00000269932 2412 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
SLC44A3Q8N4M1 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SLC44A3Q8N4M1 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.75■□□□□ 0.91
SLC44A3Q8N4M1 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SLC44A3Q8N4M1 ING1-202ENST00000338450 1189 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SLC44A3Q8N4M1 AC002094.1-201ENST00000591482 1050 ntTSL 2 BASIC20.75■□□□□ 0.91
SLC44A3Q8N4M1 AC010336.4-201ENST00000595655 438 ntTSL 5 BASIC20.75■□□□□ 0.91
SLC44A3Q8N4M1 MTFP1-206ENST00000629597 482 ntTSL 5 BASIC20.75■□□□□ 0.91
SLC44A3Q8N4M1 ADD1-202ENST00000355842 4743 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SLC44A3Q8N4M1 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SLC44A3Q8N4M1 CYP2D8P-201ENST00000433633 1490 ntBASIC20.75■□□□□ 0.91
SLC44A3Q8N4M1 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
SLC44A3Q8N4M1 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
SLC44A3Q8N4M1 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SLC44A3Q8N4M1 MDK-201ENST00000359803 985 ntAPPRIS P2 TSL 2 BASIC20.74■□□□□ 0.91
SLC44A3Q8N4M1 FAM99A-201ENST00000382167 1432 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SLC44A3Q8N4M1 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SLC44A3Q8N4M1 KRT18P57-201ENST00000443599 1254 ntBASIC20.74■□□□□ 0.91
SLC44A3Q8N4M1 RNF146-204ENST00000476956 884 ntTSL 2 BASIC20.74■□□□□ 0.91
SLC44A3Q8N4M1 NAPSB-206ENST00000562112 1266 ntBASIC20.74■□□□□ 0.91
SLC44A3Q8N4M1 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
SLC44A3Q8N4M1 AL121906.2-201ENST00000621597 723 ntBASIC20.74■□□□□ 0.91
SLC44A3Q8N4M1 CCSER2-202ENST00000359979 2066 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
SLC44A3Q8N4M1 KRT18P22-201ENST00000402024 1347 ntBASIC20.74■□□□□ 0.91
SLC44A3Q8N4M1 GOLGA2P6-201ENST00000340929 2049 ntBASIC20.73■□□□□ 0.91
SLC44A3Q8N4M1 TMCO6-203ENST00000394671 1887 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
SLC44A3Q8N4M1 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC20.73■□□□□ 0.91
SLC44A3Q8N4M1 CHST7-201ENST00000276055 2289 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SLC44A3Q8N4M1 TBC1D7-201ENST00000343141 1027 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SLC44A3Q8N4M1 SELENOF-202ENST00000370554 1220 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SLC44A3Q8N4M1 P2RY2-203ENST00000393597 2107 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SLC44A3Q8N4M1 AC134772.1-201ENST00000438872 885 ntTSL 3 BASIC20.73■□□□□ 0.91
SLC44A3Q8N4M1 FBXO32-202ENST00000443022 1227 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SLC44A3Q8N4M1 NOL7-202ENST00000451315 1184 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SLC44A3Q8N4M1 RPH3AL-203ENST00000536489 1235 ntTSL 2 BASIC20.73■□□□□ 0.91
SLC44A3Q8N4M1 AC010422.3-201ENST00000597692 838 ntAPPRIS P1 TSL 2 BASIC20.73■□□□□ 0.91
SLC44A3Q8N4M1 CCNL1-203ENST00000461804 1998 ntTSL 2 BASIC20.73■□□□□ 0.91
SLC44A3Q8N4M1 LMAN2-201ENST00000303127 1800 ntAPPRIS P2 TSL 1 (best) BASIC20.73■□□□□ 0.91
SLC44A3Q8N4M1 PRKRA-201ENST00000325748 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SLC44A3Q8N4M1 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC20.73■□□□□ 0.91
SLC44A3Q8N4M1 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC20.73■□□□□ 0.91
SLC44A3Q8N4M1 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
SLC44A3Q8N4M1 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
SLC44A3Q8N4M1 TLX2-201ENST00000233638 2136 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
SLC44A3Q8N4M1 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC20.72■□□□□ 0.91
SLC44A3Q8N4M1 POTEC-204ENST00000620346 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
SLC44A3Q8N4M1 TERF1P1-201ENST00000311003 1181 ntBASIC20.72■□□□□ 0.91
SLC44A3Q8N4M1 CRAT-202ENST00000393384 973 ntTSL 2 BASIC20.72■□□□□ 0.91
SLC44A3Q8N4M1 CDKN1B-202ENST00000396340 897 ntTSL 3 BASIC20.72■□□□□ 0.91
SLC44A3Q8N4M1 AL137013.1-201ENST00000432946 1228 ntBASIC20.72■□□□□ 0.91
SLC44A3Q8N4M1 CDKN3-209ENST00000556102 938 ntTSL 5 BASIC20.72■□□□□ 0.91
SLC44A3Q8N4M1 SIVA1-207ENST00000556195 674 ntTSL 3 BASIC20.72■□□□□ 0.91
SLC44A3Q8N4M1 AC015712.4-203ENST00000559673 630 ntTSL 3 BASIC20.72■□□□□ 0.91
SLC44A3Q8N4M1 AC002310.4-201ENST00000568114 377 ntAPPRIS P1 TSL 5 BASIC20.72■□□□□ 0.91
SLC44A3Q8N4M1 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC20.72■□□□□ 0.91
SLC44A3Q8N4M1 AC079834.2-201ENST00000609776 1949 ntBASIC20.72■□□□□ 0.91
SLC44A3Q8N4M1 PAXIP1-AS1-201ENST00000608317 2256 ntBASIC20.71■□□□□ 0.91
SLC44A3Q8N4M1 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
SLC44A3Q8N4M1 AC073508.3-201ENST00000619697 1419 ntBASIC20.71■□□□□ 0.91
SLC44A3Q8N4M1 RASSF10-201ENST00000529419 2530 ntAPPRIS P1 BASIC20.71■□□□□ 0.91
SLC44A3Q8N4M1 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC20.71■□□□□ 0.91
SLC44A3Q8N4M1 UBE2C-204ENST00000356455 850 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SLC44A3Q8N4M1 AC110769.1-201ENST00000420161 815 ntTSL 3 BASIC20.71■□□□□ 0.91
SLC44A3Q8N4M1 AL390955.1-201ENST00000428694 934 ntBASIC20.71■□□□□ 0.91
SLC44A3Q8N4M1 AC103564.1-201ENST00000437330 562 ntTSL 5 BASIC20.71■□□□□ 0.91
SLC44A3Q8N4M1 ELOVL2-AS1-202ENST00000456616 903 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SLC44A3Q8N4M1 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC20.71■□□□□ 0.91
SLC44A3Q8N4M1 AC116562.2-201ENST00000507042 360 ntBASIC20.71■□□□□ 0.91
SLC44A3Q8N4M1 FITM1-202ENST00000559294 800 ntBASIC20.71■□□□□ 0.91
SLC44A3Q8N4M1 AC010947.1-201ENST00000623454 693 ntBASIC20.71■□□□□ 0.91
SLC44A3Q8N4M1 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SLC44A3Q8N4M1 AC011484.1-201ENST00000377652 1995 ntBASIC20.71■□□□□ 0.91
SLC44A3Q8N4M1 MRPS2-201ENST00000241600 1510 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SLC44A3Q8N4M1 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SLC44A3Q8N4M1 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
SLC44A3Q8N4M1 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
SLC44A3Q8N4M1 WISP2-201ENST00000190983 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SLC44A3Q8N4M1 TRIM28-202ENST00000341753 2709 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SLC44A3Q8N4M1 AFDN-AS1-201ENST00000359760 2238 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SLC44A3Q8N4M1 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SLC44A3Q8N4M1 ZSWIM7-201ENST00000399277 2008 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SLC44A3Q8N4M1 CEBPB-AS1-201ENST00000613921 2648 ntTSL 3 BASIC20.7■□□□□ 0.9
SLC44A3Q8N4M1 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SLC44A3Q8N4M1 HES7-201ENST00000317814 678 ntAPPRIS P3 TSL 1 (best) BASIC20.7■□□□□ 0.9
SLC44A3Q8N4M1 HAGLR-204ENST00000425005 623 ntTSL 3 BASIC20.7■□□□□ 0.9
SLC44A3Q8N4M1 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC20.7■□□□□ 0.9
SLC44A3Q8N4M1 CFL2-205ENST00000555765 632 ntTSL 2 BASIC20.7■□□□□ 0.9
SLC44A3Q8N4M1 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC20.7■□□□□ 0.9
SLC44A3Q8N4M1 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC20.7■□□□□ 0.9
SLC44A3Q8N4M1 CR392000.1-201ENST00000624770 1228 ntBASIC20.7■□□□□ 0.9
SLC44A3Q8N4M1 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SLC44A3Q8N4M1 CBLC-201ENST00000270279 1579 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SLC44A3Q8N4M1 PAX1-202ENST00000444366 1850 ntAPPRIS ALT2 TSL 2 BASIC20.7■□□□□ 0.9
SLC44A3Q8N4M1 HIRA-202ENST00000340170 3395 ntTSL 1 (best) BASIC20.7■□□□□ 0.9
SLC44A3Q8N4M1 ST3GAL3-205ENST00000347631 1324 ntTSL 5 BASIC20.7■□□□□ 0.9
SLC44A3Q8N4M1 MGARP-201ENST00000398955 1339 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
SLC44A3Q8N4M1 SNX11-203ENST00000452859 1601 ntTSL 2 BASIC20.7■□□□□ 0.9
SLC44A3Q8N4M1 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC20.7■□□□□ 0.9
SLC44A3Q8N4M1 KRT78-201ENST00000304620 1778 ntAPPRIS P3 TSL 1 (best) BASIC20.69■□□□□ 0.9
SLC44A3Q8N4M1 TMEM8B-203ENST00000377996 2473 ntTSL 2 BASIC20.69■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 54.5 ms