Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 SPOP-206ENST00000504102 1865 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC28AQ8IWP9 MRM1-204ENST00000614766 1857 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC28AQ8IWP9 UCHL5-205ENST00000367454 1815 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC28AQ8IWP9 CDC20-202ENST00000372462 1777 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC28AQ8IWP9 ACVR1B-203ENST00000426655 1782 ntTSL 2 BASIC16.82■□□□□ 0.28
CCDC28AQ8IWP9 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC28AQ8IWP9 AUH-201ENST00000303617 1490 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC28AQ8IWP9 IDNK-201ENST00000376417 511 ntTSL 5 BASIC16.82■□□□□ 0.28
CCDC28AQ8IWP9 IDNK-202ENST00000376419 692 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC28AQ8IWP9 AC005540.1-201ENST00000413911 919 ntTSL 3 BASIC16.82■□□□□ 0.28
CCDC28AQ8IWP9 H2AFY-204ENST00000423969 924 ntTSL 2 BASIC16.82■□□□□ 0.28
CCDC28AQ8IWP9 CT47A7-201ENST00000434883 1288 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
CCDC28AQ8IWP9 CCDC37-AS1-202ENST00000506660 986 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC28AQ8IWP9 QDPR-208ENST00000513615 1188 ntTSL 2 BASIC16.82■□□□□ 0.28
CCDC28AQ8IWP9 ELOC-207ENST00000522337 816 ntAPPRIS P1 TSL 2 BASIC16.82■□□□□ 0.28
CCDC28AQ8IWP9 NDEL1-219ENST00000585098 454 ntTSL 3 BASIC16.82■□□□□ 0.28
CCDC28AQ8IWP9 AC010980.1-201ENST00000587192 1142 ntBASIC16.82■□□□□ 0.28
CCDC28AQ8IWP9 GAK-223ENST00000628912 497 ntTSL 5 BASIC16.82■□□□□ 0.28
CCDC28AQ8IWP9 TBX18-202ENST00000369663 6245 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC28AQ8IWP9 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC28AQ8IWP9 UGP2-201ENST00000337130 2338 ntAPPRIS P2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC28AQ8IWP9 DET1-207ENST00000564406 2315 ntTSL 2 BASIC16.82■□□□□ 0.28
CCDC28AQ8IWP9 DTNB-209ENST00000407038 2294 ntTSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC28AQ8IWP9 CD177-203ENST00000618265 2222 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC28AQ8IWP9 TINAGL1-202ENST00000457433 2140 ntAPPRIS ALT2 TSL 2 BASIC16.82■□□□□ 0.28
CCDC28AQ8IWP9 FFAR2-202ENST00000599180 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC28AQ8IWP9 UBE2I-203ENST00000397514 2976 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC28AQ8IWP9 CMPK2-201ENST00000256722 2884 ntAPPRIS P3 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC28AQ8IWP9 GIT1-203ENST00000394869 3711 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC28AQ8IWP9 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC28AQ8IWP9 GAB1-201ENST00000262994 2648 ntAPPRIS ALT1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC28AQ8IWP9 NUDT9-201ENST00000302174 1701 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC28AQ8IWP9 C1orf174-201ENST00000361605 1666 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC28AQ8IWP9 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC28AQ8IWP9 CCDC85B-201ENST00000312579 1524 ntAPPRIS P1 BASIC16.81■□□□□ 0.28
CCDC28AQ8IWP9 DNAJA3-203ENST00000431375 2294 ntTSL 2 BASIC16.81■□□□□ 0.28
CCDC28AQ8IWP9 ACADVL-205ENST00000543245 2227 ntTSL 2 BASIC16.81■□□□□ 0.28
CCDC28AQ8IWP9 IKBKG-211ENST00000615874 1460 ntTSL 5 BASIC16.81■□□□□ 0.28
CCDC28AQ8IWP9 IKBKG-215ENST00000619941 1463 ntTSL 5 BASIC16.81■□□□□ 0.28
CCDC28AQ8IWP9 CLEC2L-201ENST00000422142 1359 ntAPPRIS P2 TSL 3 BASIC16.81■□□□□ 0.28
CCDC28AQ8IWP9 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC28AQ8IWP9 PIKFYVE-203ENST00000392202 2039 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC28AQ8IWP9 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC16.81■□□□□ 0.28
CCDC28AQ8IWP9 SNAP23-201ENST00000249647 2687 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC28AQ8IWP9 NOC2LP2-201ENST00000407594 1944 ntBASIC16.81■□□□□ 0.28
CCDC28AQ8IWP9 FAM162B-201ENST00000368557 1036 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC28AQ8IWP9 RASGRP2-204ENST00000377487 642 ntTSL 2 BASIC16.81■□□□□ 0.28
CCDC28AQ8IWP9 YBX1P4-201ENST00000392794 808 ntBASIC16.81■□□□□ 0.28
CCDC28AQ8IWP9 AC148477.1-201ENST00000537720 476 ntTSL 3 BASIC16.81■□□□□ 0.28
CCDC28AQ8IWP9 HNRNPUL1-221ENST00000617305 1018 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC28AQ8IWP9 CD24-204ENST00000619133 2513 ntAPPRIS P3 TSL 2 BASIC16.81■□□□□ 0.28
CCDC28AQ8IWP9 WBP2-204ENST00000585462 1895 ntTSL 3 BASIC16.81■□□□□ 0.28
CCDC28AQ8IWP9 IL15-201ENST00000296545 2472 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC28AQ8IWP9 N4BP3-201ENST00000274605 6080 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC28AQ8IWP9 GUCY1A2-201ENST00000282249 3047 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC28AQ8IWP9 PJA1-201ENST00000361478 2755 ntAPPRIS P4 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC28AQ8IWP9 ZBTB11-202ENST00000461821 2115 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC28AQ8IWP9 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC28AQ8IWP9 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC16.81■□□□□ 0.28
CCDC28AQ8IWP9 FAM53B-201ENST00000280780 1568 ntTSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC28AQ8IWP9 PTOV1-220ENST00000601675 1587 ntAPPRIS P1 TSL 1 (best) BASIC16.81■□□□□ 0.28
CCDC28AQ8IWP9 HBEGF-201ENST00000230990 2386 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC28AQ8IWP9 GNAI1-201ENST00000351004 3347 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC28AQ8IWP9 XBP1-201ENST00000216037 1850 ntAPPRIS P2 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC28AQ8IWP9 NPRL3-201ENST00000399953 2784 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC28AQ8IWP9 PDLIM2-204ENST00000397760 1847 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC28AQ8IWP9 RAB43-201ENST00000315150 4467 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC28AQ8IWP9 CITED4-201ENST00000372638 1316 ntAPPRIS P1 BASIC16.8■□□□□ 0.28
CCDC28AQ8IWP9 MFF-203ENST00000349901 1716 ntTSL 2 BASIC16.8■□□□□ 0.28
CCDC28AQ8IWP9 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC16.8■□□□□ 0.28
CCDC28AQ8IWP9 DYM-203ENST00000442713 2147 ntTSL 2 BASIC16.8■□□□□ 0.28
CCDC28AQ8IWP9 EPHA10-211ENST00000540011 720 ntTSL 5 BASIC16.8■□□□□ 0.28
CCDC28AQ8IWP9 THA1P-201ENST00000590384 1145 ntBASIC16.8■□□□□ 0.28
CCDC28AQ8IWP9 HOOK2-202ENST00000397668 2513 ntTSL 1 (best) BASIC16.8■□□□□ 0.28
CCDC28AQ8IWP9 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC16.8■□□□□ 0.28
CCDC28AQ8IWP9 R3HCC1-202ENST00000411463 1467 ntAPPRIS P5 TSL 5 BASIC16.8■□□□□ 0.28
CCDC28AQ8IWP9 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
CCDC28AQ8IWP9 QPCTL-202ENST00000366382 1814 ntTSL 2 BASIC16.8■□□□□ 0.28
CCDC28AQ8IWP9 EXD3-201ENST00000340951 2872 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC28AQ8IWP9 RNF112-201ENST00000461366 3212 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC28AQ8IWP9 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC16.79■□□□□ 0.28
CCDC28AQ8IWP9 HIBCH-202ENST00000392332 2463 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC28AQ8IWP9 INTS10-201ENST00000397977 2804 ntAPPRIS P1 TSL 2 BASIC16.79■□□□□ 0.28
CCDC28AQ8IWP9 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC28AQ8IWP9 SLC5A10-203ENST00000395645 2069 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC28AQ8IWP9 AC145124.1-201ENST00000528514 1361 ntTSL 2 BASIC16.79■□□□□ 0.28
CCDC28AQ8IWP9 AC131160.1-201ENST00000639401 3058 ntAPPRIS P1 TSL 5 BASIC16.79■□□□□ 0.28
CCDC28AQ8IWP9 ARNTL-205ENST00000403510 2745 ntTSL 2 BASIC16.79■□□□□ 0.28
CCDC28AQ8IWP9 FOXN3-214ENST00000557258 2692 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC28AQ8IWP9 AC022916.1-201ENST00000590478 2658 ntTSL 2 BASIC16.79■□□□□ 0.28
CCDC28AQ8IWP9 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC28AQ8IWP9 HNF1A-202ENST00000400024 2337 ntTSL 2 BASIC16.79■□□□□ 0.28
CCDC28AQ8IWP9 CPT2-207ENST00000636867 2643 ntTSL 5 BASIC16.79■□□□□ 0.28
CCDC28AQ8IWP9 COMP-202ENST00000425807 2292 ntTSL 2 BASIC16.79■□□□□ 0.28
CCDC28AQ8IWP9 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
CCDC28AQ8IWP9 VSTM2A-202ENST00000402613 1076 ntTSL 2 BASIC16.79■□□□□ 0.28
CCDC28AQ8IWP9 AC009511.2-201ENST00000545904 679 ntTSL 2 BASIC16.79■□□□□ 0.28
CCDC28AQ8IWP9 AC005551.1-201ENST00000641816 493 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
CCDC28AQ8IWP9 RPS6KA1-203ENST00000374166 3131 ntTSL 5 BASIC16.79■□□□□ 0.28
CCDC28AQ8IWP9 MAPK9-202ENST00000347470 1509 ntTSL 5 BASIC16.79■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 19.1 ms