Protein–RNA interactions for Protein: Q6P9A3

ZNF549, Zinc finger protein 549, humanhuman

Predictions only

Length 640 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ZNF549Q6P9A3 TCF3P1-201ENST00000423021 1937 ntBASIC20.04■□□□□ 0.8
ZNF549Q6P9A3 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ZNF549Q6P9A3 LINC00482-201ENST00000332012 2023 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
ZNF549Q6P9A3 DUSP18-205ENST00000404885 1306 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ZNF549Q6P9A3 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
ZNF549Q6P9A3 H19-201ENST00000411754 1788 ntTSL 5 BASIC20.03■□□□□ 0.8
ZNF549Q6P9A3 LINC00304-201ENST00000321214 2243 ntTSL 2 BASIC20.03■□□□□ 0.8
ZNF549Q6P9A3 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC20.03■□□□□ 0.8
ZNF549Q6P9A3 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ZNF549Q6P9A3 TTC12-202ENST00000393020 2541 ntTSL 5 BASIC20.03■□□□□ 0.8
ZNF549Q6P9A3 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC20.03■□□□□ 0.8
ZNF549Q6P9A3 ASIP-201ENST00000374954 586 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ZNF549Q6P9A3 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
ZNF549Q6P9A3 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
ZNF549Q6P9A3 PGM5P4-201ENST00000421970 445 ntBASIC20.03■□□□□ 0.8
ZNF549Q6P9A3 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC20.03■□□□□ 0.8
ZNF549Q6P9A3 CD99P1-203ENST00000431582 602 ntTSL 4 BASIC20.03■□□□□ 0.8
ZNF549Q6P9A3 PET117-201ENST00000432901 1141 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ZNF549Q6P9A3 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC20.03■□□□□ 0.8
ZNF549Q6P9A3 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC20.03■□□□□ 0.8
ZNF549Q6P9A3 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ZNF549Q6P9A3 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC20.03■□□□□ 0.8
ZNF549Q6P9A3 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ZNF549Q6P9A3 SHOX2-203ENST00000441443 3038 ntAPPRIS ALT2 TSL 5 BASIC20.03■□□□□ 0.8
ZNF549Q6P9A3 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC20.03■□□□□ 0.8
ZNF549Q6P9A3 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
ZNF549Q6P9A3 UBE2K-201ENST00000261427 5245 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ZNF549Q6P9A3 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
ZNF549Q6P9A3 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC20.03■□□□□ 0.8
ZNF549Q6P9A3 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC20.02■□□□□ 0.8
ZNF549Q6P9A3 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
ZNF549Q6P9A3 MSLN-201ENST00000382862 2116 ntAPPRIS P3 TSL 5 BASIC20.02■□□□□ 0.8
ZNF549Q6P9A3 BCL2L12-201ENST00000246784 990 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
ZNF549Q6P9A3 ZNF644-203ENST00000361321 1253 ntTSL 2 BASIC20.02■□□□□ 0.8
ZNF549Q6P9A3 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
ZNF549Q6P9A3 MCRIP2P1-201ENST00000394346 511 ntBASIC20.02■□□□□ 0.8
ZNF549Q6P9A3 VSX1-206ENST00000444511 1197 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
ZNF549Q6P9A3 ASRGL1-210ENST00000534571 639 ntTSL 2 BASIC20.02■□□□□ 0.8
ZNF549Q6P9A3 PTGER2-202ENST00000557436 643 ntTSL 3 BASIC20.02■□□□□ 0.8
ZNF549Q6P9A3 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC20.02■□□□□ 0.8
ZNF549Q6P9A3 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
ZNF549Q6P9A3 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.8
ZNF549Q6P9A3 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC20.02■□□□□ 0.8
ZNF549Q6P9A3 KMT2B-201ENST00000420124 8469 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
ZNF549Q6P9A3 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
ZNF549Q6P9A3 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
ZNF549Q6P9A3 PAXIP1-202ENST00000404141 3827 ntAPPRIS P1 TSL 5 BASIC20.02■□□□□ 0.79
ZNF549Q6P9A3 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC20.02■□□□□ 0.79
ZNF549Q6P9A3 CCDC91-207ENST00000539107 2440 ntTSL 5 BASIC20.02■□□□□ 0.79
ZNF549Q6P9A3 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC20.02■□□□□ 0.79
ZNF549Q6P9A3 UGDH-206ENST00000507089 1712 ntTSL 2 BASIC20.02■□□□□ 0.79
ZNF549Q6P9A3 SCRN2-201ENST00000290216 1548 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
ZNF549Q6P9A3 ENTPD2-201ENST00000312665 1500 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
ZNF549Q6P9A3 SLC22A23-205ENST00000436008 6641 ntAPPRIS ALT2 TSL 5 BASIC20.02■□□□□ 0.79
ZNF549Q6P9A3 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.79
ZNF549Q6P9A3 SNAP91-211ENST00000520213 2168 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
ZNF549Q6P9A3 ACAT1-201ENST00000265838 1761 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
ZNF549Q6P9A3 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
ZNF549Q6P9A3 KANK4-202ENST00000354381 2103 ntTSL 2 BASIC20.01■□□□□ 0.79
ZNF549Q6P9A3 MGST3-205ENST00000367889 1015 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
ZNF549Q6P9A3 FGF12-AS2-201ENST00000443165 580 ntTSL 4 BASIC20.01■□□□□ 0.79
ZNF549Q6P9A3 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
ZNF549Q6P9A3 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
ZNF549Q6P9A3 ADM-207ENST00000530439 1839 ntTSL 2 BASIC20.01■□□□□ 0.79
ZNF549Q6P9A3 KLHDC2-201ENST00000298307 5514 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
ZNF549Q6P9A3 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC20.01■□□□□ 0.79
ZNF549Q6P9A3 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
ZNF549Q6P9A3 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
ZNF549Q6P9A3 BX005266.2-202ENST00000446626 2245 ntTSL 1 (best) BASIC20■□□□□ 0.79
ZNF549Q6P9A3 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
ZNF549Q6P9A3 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC20■□□□□ 0.79
ZNF549Q6P9A3 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC20■□□□□ 0.79
ZNF549Q6P9A3 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC20■□□□□ 0.79
ZNF549Q6P9A3 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC20■□□□□ 0.79
ZNF549Q6P9A3 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ZNF549Q6P9A3 GCK-205ENST00000437084 1385 ntTSL 5 BASIC20■□□□□ 0.79
ZNF549Q6P9A3 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC20■□□□□ 0.79
ZNF549Q6P9A3 AGAP4-207ENST00000616763 2784 ntAPPRIS ALT2 TSL 1 (best) BASIC20■□□□□ 0.79
ZNF549Q6P9A3 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC20■□□□□ 0.79
ZNF549Q6P9A3 PLAC9-202ENST00000372267 472 ntAPPRIS ALT2 TSL 3 BASIC20■□□□□ 0.79
ZNF549Q6P9A3 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC20■□□□□ 0.79
ZNF549Q6P9A3 AL355472.2-201ENST00000422958 438 ntBASIC20■□□□□ 0.79
ZNF549Q6P9A3 AC080038.1-201ENST00000611274 1154 ntBASIC20■□□□□ 0.79
ZNF549Q6P9A3 MDK-213ENST00000617138 635 ntTSL 2 BASIC20■□□□□ 0.79
ZNF549Q6P9A3 CIRBP-246ENST00000628979 1043 ntTSL 2 BASIC20■□□□□ 0.79
ZNF549Q6P9A3 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC20■□□□□ 0.79
ZNF549Q6P9A3 RTN4RL2-201ENST00000335099 2203 ntAPPRIS P1 TSL 1 (best) BASIC20■□□□□ 0.79
ZNF549Q6P9A3 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC20■□□□□ 0.79
ZNF549Q6P9A3 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC20■□□□□ 0.79
ZNF549Q6P9A3 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
ZNF549Q6P9A3 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
ZNF549Q6P9A3 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
ZNF549Q6P9A3 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
ZNF549Q6P9A3 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC19.99■□□□□ 0.79
ZNF549Q6P9A3 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC19.99■□□□□ 0.79
ZNF549Q6P9A3 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
ZNF549Q6P9A3 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
ZNF549Q6P9A3 BET1L-204ENST00000410108 637 ntTSL 3 BASIC19.99■□□□□ 0.79
ZNF549Q6P9A3 MELTF-AS1-202ENST00000415244 951 ntTSL 1 (best) BASIC19.99■□□□□ 0.79
ZNF549Q6P9A3 AC004882.1-201ENST00000416352 590 ntTSL 3 BASIC19.99■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 21.3 ms