Protein–RNA interactions for Protein: Q53GG5

PDLIM3, PDZ and LIM domain protein 3, humanhuman

Predicted RBP Predictions only

Length 364 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PDLIM3Q53GG5 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PDLIM3Q53GG5 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC16.66■□□□□ 0.26
PDLIM3Q53GG5 LINC01184-201ENST00000499346 1380 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PDLIM3Q53GG5 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PDLIM3Q53GG5 NGLY1-204ENST00000396649 2024 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PDLIM3Q53GG5 BCAT2-207ENST00000597011 1579 ntTSL 5 BASIC16.65■□□□□ 0.26
PDLIM3Q53GG5 NAA10-208ENST00000464845 1772 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PDLIM3Q53GG5 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PDLIM3Q53GG5 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PDLIM3Q53GG5 URAD-201ENST00000332715 931 ntAPPRIS P1 TSL 5 BASIC16.65■□□□□ 0.26
PDLIM3Q53GG5 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC16.65■□□□□ 0.26
PDLIM3Q53GG5 METTL15-202ENST00000403099 795 ntTSL 5 BASIC16.65■□□□□ 0.26
PDLIM3Q53GG5 CDKN3-204ENST00000442975 727 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PDLIM3Q53GG5 LRRC75A-AS1-202ENST00000470491 1057 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PDLIM3Q53GG5 AC099522.1-201ENST00000505955 881 ntTSL 3 BASIC16.65■□□□□ 0.26
PDLIM3Q53GG5 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
PDLIM3Q53GG5 OAS3-207ENST00000551007 998 ntTSL 2 BASIC16.65■□□□□ 0.26
PDLIM3Q53GG5 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC16.65■□□□□ 0.26
PDLIM3Q53GG5 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC16.65■□□□□ 0.26
PDLIM3Q53GG5 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
PDLIM3Q53GG5 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC16.65■□□□□ 0.26
PDLIM3Q53GG5 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC16.65■□□□□ 0.26
PDLIM3Q53GG5 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC16.65■□□□□ 0.26
PDLIM3Q53GG5 STK10-201ENST00000176763 6060 ntAPPRIS P1 TSL 1 (best) BASIC16.65■□□□□ 0.26
PDLIM3Q53GG5 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC16.65■□□□□ 0.26
PDLIM3Q53GG5 C7orf49-213ENST00000617987 1727 ntTSL 5 BASIC16.65■□□□□ 0.26
PDLIM3Q53GG5 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC16.64■□□□□ 0.26
PDLIM3Q53GG5 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
PDLIM3Q53GG5 RARG-204ENST00000543726 1779 ntTSL 2 BASIC16.64■□□□□ 0.25
PDLIM3Q53GG5 CHRNA4-201ENST00000370263 5577 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PDLIM3Q53GG5 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
PDLIM3Q53GG5 RELL2-205ENST00000518856 1419 ntTSL 5 BASIC16.64■□□□□ 0.25
PDLIM3Q53GG5 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC16.64■□□□□ 0.25
PDLIM3Q53GG5 VGF-201ENST00000249330 2575 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PDLIM3Q53GG5 IRX5-202ENST00000394636 2401 ntAPPRIS P3 TSL 3 BASIC16.64■□□□□ 0.25
PDLIM3Q53GG5 AC093620.1-201ENST00000342963 583 ntTSL 3 BASIC16.64■□□□□ 0.25
PDLIM3Q53GG5 AC073210.2-201ENST00000430369 194 ntBASIC16.64■□□□□ 0.25
PDLIM3Q53GG5 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC16.64■□□□□ 0.25
PDLIM3Q53GG5 RNF146-206ENST00000480444 843 ntTSL 2 BASIC16.64■□□□□ 0.25
PDLIM3Q53GG5 PARD6A-203ENST00000602551 1171 ntTSL 5 BASIC16.64■□□□□ 0.25
PDLIM3Q53GG5 AC010331.1-201ENST00000611423 582 ntBASIC16.64■□□□□ 0.25
PDLIM3Q53GG5 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC16.64■□□□□ 0.25
PDLIM3Q53GG5 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC16.64■□□□□ 0.25
PDLIM3Q53GG5 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC16.64■□□□□ 0.25
PDLIM3Q53GG5 BID-203ENST00000399765 1879 ntTSL 2 BASIC16.64■□□□□ 0.25
PDLIM3Q53GG5 SH3BP2-204ENST00000452765 2265 ntAPPRIS P3 TSL 1 (best) BASIC16.64■□□□□ 0.25
PDLIM3Q53GG5 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PDLIM3Q53GG5 KAZN-208ENST00000636203 6874 ntTSL 5 BASIC16.64■□□□□ 0.25
PDLIM3Q53GG5 TRAK1-209ENST00000487159 5536 ntAPPRIS ALT2 TSL 5 BASIC16.64■□□□□ 0.25
PDLIM3Q53GG5 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC16.64■□□□□ 0.25
PDLIM3Q53GG5 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PDLIM3Q53GG5 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
PDLIM3Q53GG5 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PDLIM3Q53GG5 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PDLIM3Q53GG5 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
PDLIM3Q53GG5 BX005040.4-201ENST00000637145 1518 ntBASIC16.64■□□□□ 0.25
PDLIM3Q53GG5 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC16.64■□□□□ 0.25
PDLIM3Q53GG5 LACTB-202ENST00000413507 2978 ntTSL 1 (best) BASIC16.64■□□□□ 0.25
PDLIM3Q53GG5 POMT2-201ENST00000261534 4876 ntAPPRIS P1 TSL 1 (best) BASIC16.64■□□□□ 0.25
PDLIM3Q53GG5 AL162377.1-201ENST00000618844 1793 ntBASIC16.64■□□□□ 0.25
PDLIM3Q53GG5 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC16.64■□□□□ 0.25
PDLIM3Q53GG5 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PDLIM3Q53GG5 ADM-206ENST00000528655 1889 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PDLIM3Q53GG5 AC005224.4-201ENST00000583262 1652 ntBASIC16.63■□□□□ 0.25
PDLIM3Q53GG5 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PDLIM3Q53GG5 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PDLIM3Q53GG5 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC16.63■□□□□ 0.25
PDLIM3Q53GG5 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PDLIM3Q53GG5 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
PDLIM3Q53GG5 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PDLIM3Q53GG5 ZNF295-AS1-201ENST00000412906 952 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PDLIM3Q53GG5 DUSP5P2-201ENST00000426873 1033 ntBASIC16.63■□□□□ 0.25
PDLIM3Q53GG5 AC098590.1-201ENST00000468126 897 ntBASIC16.63■□□□□ 0.25
PDLIM3Q53GG5 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC16.63■□□□□ 0.25
PDLIM3Q53GG5 SORCS3-202ENST00000369701 5757 ntAPPRIS P1 TSL 1 (best) BASIC16.63■□□□□ 0.25
PDLIM3Q53GG5 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC16.63■□□□□ 0.25
PDLIM3Q53GG5 SNX27-203ENST00000368843 7197 ntAPPRIS P3 TSL 1 (best) BASIC16.63■□□□□ 0.25
PDLIM3Q53GG5 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC16.63■□□□□ 0.25
PDLIM3Q53GG5 NSUN5-204ENST00000438747 1663 ntAPPRIS P4 TSL 1 (best) BASIC16.62■□□□□ 0.25
PDLIM3Q53GG5 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
PDLIM3Q53GG5 CLN3-207ENST00000395653 1430 ntTSL 5 BASIC16.62■□□□□ 0.25
PDLIM3Q53GG5 TLNRD1-201ENST00000267984 4845 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
PDLIM3Q53GG5 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC16.62■□□□□ 0.25
PDLIM3Q53GG5 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PDLIM3Q53GG5 GATA5-201ENST00000252997 2595 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PDLIM3Q53GG5 MAPT-209ENST00000446361 5345 ntAPPRIS ALT2 TSL 1 (best) BASIC16.62■□□□□ 0.25
PDLIM3Q53GG5 CSPG5-203ENST00000456150 2089 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PDLIM3Q53GG5 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC16.62■□□□□ 0.25
PDLIM3Q53GG5 BAALC-201ENST00000297574 801 ntTSL 3 BASIC16.62■□□□□ 0.25
PDLIM3Q53GG5 SERF1A-201ENST00000317633 963 ntAPPRIS P1 TSL 1 (best) BASIC16.62■□□□□ 0.25
PDLIM3Q53GG5 KRTAP17-1-201ENST00000334202 779 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
PDLIM3Q53GG5 XXYLT1-202ENST00000356740 564 ntTSL 2 BASIC16.62■□□□□ 0.25
PDLIM3Q53GG5 CALML5-201ENST00000380332 859 ntAPPRIS P1 BASIC16.62■□□□□ 0.25
PDLIM3Q53GG5 C2orf82-203ENST00000409533 561 ntAPPRIS P2 TSL 4 BASIC16.62■□□□□ 0.25
PDLIM3Q53GG5 AC007040.1-201ENST00000416229 477 ntTSL 3 BASIC16.62■□□□□ 0.25
PDLIM3Q53GG5 FAM210CP-201ENST00000445714 574 ntBASIC16.62■□□□□ 0.25
PDLIM3Q53GG5 ZFAS1-206ENST00000450535 1075 ntTSL 3 BASIC16.62■□□□□ 0.25
PDLIM3Q53GG5 HMX1-202ENST00000506970 651 ntTSL 1 (best) BASIC16.62■□□□□ 0.25
PDLIM3Q53GG5 AC012313.1-203ENST00000597980 570 ntTSL 4 BASIC16.62■□□□□ 0.25
PDLIM3Q53GG5 MFSD14C-203ENST00000602917 786 ntAPPRIS P5 TSL 1 (best) BASIC16.62■□□□□ 0.25
Retrieved 100 of 98,524 protein–RNA pairs in 27.9 ms