Protein–RNA interactions for Protein: P58418

CLRN1, Clarin-1, humanhuman

Predictions only

Length 232 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLRN1P58418 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
CLRN1P58418 SPHK1-203ENST00000545180 2238 ntAPPRIS P3 TSL 2 BASIC18.02■□□□□ 0.47
CLRN1P58418 SLC44A3-203ENST00000446120 2094 ntTSL 2 BASIC18.02■□□□□ 0.47
CLRN1P58418 BRICD5-201ENST00000328540 1913 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CLRN1P58418 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
CLRN1P58418 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CLRN1P58418 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC18.02■□□□□ 0.47
CLRN1P58418 CLN5-201ENST00000377453 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
CLRN1P58418 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
CLRN1P58418 BRD4-202ENST00000360016 3240 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLRN1P58418 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CLRN1P58418 APBB3-203ENST00000357560 2218 ntAPPRIS P3 TSL 5 BASIC18.01■□□□□ 0.47
CLRN1P58418 PGPEP1L-201ENST00000378919 995 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CLRN1P58418 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC18.01■□□□□ 0.47
CLRN1P58418 YIF1A-205ENST00000471387 854 ntTSL 5 BASIC18.01■□□□□ 0.47
CLRN1P58418 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC18.01■□□□□ 0.47
CLRN1P58418 PET100-202ENST00000594797 719 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLRN1P58418 AC005181.1-201ENST00000604782 1256 ntBASIC18.01■□□□□ 0.47
CLRN1P58418 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLRN1P58418 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLRN1P58418 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC18.01■□□□□ 0.47
CLRN1P58418 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC18.01■□□□□ 0.47
CLRN1P58418 ARHGEF18-202ENST00000359920 5733 ntAPPRIS ALT2 TSL 2 BASIC18.01■□□□□ 0.47
CLRN1P58418 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CLRN1P58418 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC18.01■□□□□ 0.47
CLRN1P58418 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC18.01■□□□□ 0.47
CLRN1P58418 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CLRN1P58418 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC18■□□□□ 0.47
CLRN1P58418 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
CLRN1P58418 DPP3P2-201ENST00000416030 1696 ntBASIC18■□□□□ 0.47
CLRN1P58418 HDGFL2-208ENST00000616600 2281 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
CLRN1P58418 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC18■□□□□ 0.47
CLRN1P58418 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC18■□□□□ 0.47
CLRN1P58418 MLNR-201ENST00000218721 1239 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CLRN1P58418 APTR-203ENST00000430801 583 ntTSL 5 BASIC18■□□□□ 0.47
CLRN1P58418 AC025754.1-201ENST00000507566 407 ntTSL 3 BASIC18■□□□□ 0.47
CLRN1P58418 RPS15-206ENST00000589656 473 ntAPPRIS ALT1 TSL 5 BASIC18■□□□□ 0.47
CLRN1P58418 TMEM230-210ENST00000612323 1231 ntTSL 1 (best) BASIC18■□□□□ 0.47
CLRN1P58418 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC18■□□□□ 0.47
CLRN1P58418 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC18■□□□□ 0.47
CLRN1P58418 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC18■□□□□ 0.47
CLRN1P58418 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CLRN1P58418 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC18■□□□□ 0.47
CLRN1P58418 TOR2A-201ENST00000336067 1370 ntTSL 2 BASIC18■□□□□ 0.47
CLRN1P58418 HDHD5-201ENST00000155674 1735 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
CLRN1P58418 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC18■□□□□ 0.47
CLRN1P58418 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC18■□□□□ 0.47
CLRN1P58418 POMGNT1-201ENST00000371984 2728 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CLRN1P58418 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CLRN1P58418 UBE2F-201ENST00000272930 2009 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CLRN1P58418 SPNS1-203ENST00000334536 2027 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CLRN1P58418 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CLRN1P58418 RIMBP3C-201ENST00000331505 5475 ntAPPRIS ALT2 BASIC17.99■□□□□ 0.47
CLRN1P58418 PCSK6-214ENST00000611716 4409 ntAPPRIS P4 TSL 1 (best) BASIC17.99■□□□□ 0.47
CLRN1P58418 TEX22-201ENST00000451127 2571 ntAPPRIS P1 TSL 2 BASIC17.99■□□□□ 0.47
CLRN1P58418 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CLRN1P58418 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
CLRN1P58418 SMG8-203ENST00000578922 2178 ntBASIC17.99■□□□□ 0.47
CLRN1P58418 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CLRN1P58418 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CLRN1P58418 FTCDNL1-202ENST00000420128 1021 ntTSL 5 BASIC17.99■□□□□ 0.47
CLRN1P58418 OR10C1-204ENST00000622521 1039 ntBASIC17.99■□□□□ 0.47
CLRN1P58418 AC073111.5-205ENST00000641717 521 ntBASIC17.99■□□□□ 0.47
CLRN1P58418 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CLRN1P58418 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CLRN1P58418 STARD3-202ENST00000394250 1949 ntTSL 2 BASIC17.99■□□□□ 0.47
CLRN1P58418 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC17.99■□□□□ 0.47
CLRN1P58418 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC17.99■□□□□ 0.47
CLRN1P58418 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CLRN1P58418 TBXA2R-202ENST00000411851 1494 ntTSL 2 BASIC17.99■□□□□ 0.47
CLRN1P58418 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC17.99■□□□□ 0.47
CLRN1P58418 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC17.99■□□□□ 0.47
CLRN1P58418 SMARCC1-201ENST00000254480 6375 ntAPPRIS P1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CLRN1P58418 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC17.99■□□□□ 0.47
CLRN1P58418 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC17.99■□□□□ 0.47
CLRN1P58418 MREG-201ENST00000263268 1314 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
CLRN1P58418 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC17.98■□□□□ 0.47
CLRN1P58418 WAS-201ENST00000376701 1849 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CLRN1P58418 STK25-205ENST00000405883 1904 ntTSL 2 BASIC17.98■□□□□ 0.47
CLRN1P58418 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CLRN1P58418 MARK1-202ENST00000366918 5169 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CLRN1P58418 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CLRN1P58418 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CLRN1P58418 C19orf81-201ENST00000425202 765 ntAPPRIS P2 TSL 5 BASIC17.98■□□□□ 0.47
CLRN1P58418 TRIM35-203ENST00000521253 1215 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CLRN1P58418 AC012313.6-201ENST00000599889 790 ntTSL 3 BASIC17.98■□□□□ 0.47
CLRN1P58418 ARHGAP27-201ENST00000290470 1376 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CLRN1P58418 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC17.98■□□□□ 0.47
CLRN1P58418 GRINA-201ENST00000313269 1968 ntAPPRIS P1 TSL 5 BASIC17.98■□□□□ 0.47
CLRN1P58418 RPUSD1-202ENST00000561734 2159 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CLRN1P58418 PHF12-202ENST00000332830 4759 ntAPPRIS P1 TSL 2 BASIC17.98■□□□□ 0.47
CLRN1P58418 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC17.98■□□□□ 0.47
CLRN1P58418 CMTM4-201ENST00000330687 3414 ntTSL 1 (best) BASIC17.98■□□□□ 0.47
CLRN1P58418 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC17.98■□□□□ 0.47
CLRN1P58418 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC17.98■□□□□ 0.47
CLRN1P58418 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC17.98■□□□□ 0.47
CLRN1P58418 TAPT1-201ENST00000405303 4591 ntAPPRIS P1 TSL 1 (best) BASIC17.98■□□□□ 0.47
CLRN1P58418 CD58-203ENST00000457047 1328 ntAPPRIS ALT2 TSL 1 (best) BASIC17.98■□□□□ 0.47
CLRN1P58418 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC17.97■□□□□ 0.47
CLRN1P58418 B3GAT3-202ENST00000531383 2056 ntTSL 2 BASIC17.97■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 55.2 ms