Protein–RNA interactions for Protein: P56524

HDAC4, Histone deacetylase 4, humanhuman

Predictions only

Length 1,084 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4P56524 LINC01547-202ENST00000397841 2303 ntTSL 2 BASIC21.08■□□□□ 0.97
HDAC4P56524 PIGP-203ENST00000399098 972 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
HDAC4P56524 TRNT1-207ENST00000420393 854 ntTSL 3 BASIC21.08■□□□□ 0.97
HDAC4P56524 FAM72A-205ENST00000468509 629 ntTSL 5 BASIC21.08■□□□□ 0.97
HDAC4P56524 ZNF696-204ENST00000520333 605 ntTSL 5 BASIC21.08■□□□□ 0.97
HDAC4P56524 NCAPD3-204ENST00000526422 1060 ntAPPRIS ALT2 TSL 2 BASIC21.08■□□□□ 0.97
HDAC4P56524 AC091138.1-202ENST00000578967 457 ntTSL 2 BASIC21.08■□□□□ 0.97
HDAC4P56524 JOSD2-205ENST00000601423 802 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
HDAC4P56524 VIM-AS1-202ENST00000605833 918 ntTSL 3 BASIC21.08■□□□□ 0.97
HDAC4P56524 GXYLT1P5-201ENST00000614548 1189 ntBASIC21.08■□□□□ 0.97
HDAC4P56524 AL589743.5-201ENST00000616611 1050 ntBASIC21.08■□□□□ 0.97
HDAC4P56524 RAB28-201ENST00000288723 1810 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
HDAC4P56524 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
HDAC4P56524 DPP3P2-201ENST00000416030 1696 ntBASIC21.08■□□□□ 0.96
HDAC4P56524 PMS1-222ENST00000639501 2506 ntTSL 5 BASIC21.08■□□□□ 0.96
HDAC4P56524 REM2-201ENST00000267396 1923 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
HDAC4P56524 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HDAC4P56524 CXCR3-201ENST00000373691 1861 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
HDAC4P56524 MAG-201ENST00000361922 2426 ntAPPRIS ALT2 TSL 1 (best) BASIC21.07■□□□□ 0.96
HDAC4P56524 UBR2-203ENST00000372903 2423 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
HDAC4P56524 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
HDAC4P56524 INTS11-208ENST00000435064 2148 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HDAC4P56524 UNC119-202ENST00000335765 1424 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HDAC4P56524 PRTN3-201ENST00000234347 1026 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HDAC4P56524 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HDAC4P56524 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HDAC4P56524 TSPY6P-201ENST00000448518 926 ntBASIC21.07■□□□□ 0.96
HDAC4P56524 AP000785.1-201ENST00000527314 613 ntTSL 4 BASIC21.07■□□□□ 0.96
HDAC4P56524 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HDAC4P56524 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC21.07■□□□□ 0.96
HDAC4P56524 TMPO-204ENST00000393053 2374 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
HDAC4P56524 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC21.07■□□□□ 0.96
HDAC4P56524 OGG1-202ENST00000302008 2191 ntAPPRIS ALT2 TSL 5 BASIC21.06■□□□□ 0.96
HDAC4P56524 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC21.06■□□□□ 0.96
HDAC4P56524 PACSIN3-211ENST00000539589 2009 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
HDAC4P56524 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
HDAC4P56524 GDF15-201ENST00000252809 1200 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
HDAC4P56524 NFS1-201ENST00000306750 738 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
HDAC4P56524 AIDA-202ENST00000355727 1072 ntTSL 5 BASIC21.06■□□□□ 0.96
HDAC4P56524 GPX1P1-201ENST00000388829 606 ntBASIC21.06■□□□□ 0.96
HDAC4P56524 BX276092.2-201ENST00000417668 665 ntBASIC21.06■□□□□ 0.96
HDAC4P56524 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC21.06■□□□□ 0.96
HDAC4P56524 ARHGEF4-202ENST00000355771 1872 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
HDAC4P56524 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
HDAC4P56524 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC21.06■□□□□ 0.96
HDAC4P56524 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
HDAC4P56524 P4HB-201ENST00000331483 2603 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
HDAC4P56524 SUMO3-204ENST00000411651 1921 ntTSL 2 BASIC21.06■□□□□ 0.96
HDAC4P56524 ADAP1-218ENST00000617043 1946 ntTSL 2 BASIC21.06■□□□□ 0.96
HDAC4P56524 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC21.06■□□□□ 0.96
HDAC4P56524 NOS3-204ENST00000467517 2377 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
HDAC4P56524 IRX4-208ENST00000622814 2398 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
HDAC4P56524 ME2-202ENST00000382927 2492 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
HDAC4P56524 H19-201ENST00000411754 1788 ntTSL 5 BASIC21.05■□□□□ 0.96
HDAC4P56524 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
HDAC4P56524 MIPEPP3-201ENST00000412105 444 ntBASIC21.05■□□□□ 0.96
HDAC4P56524 ALKBH6-212ENST00000485128 959 ntTSL 5 BASIC21.05■□□□□ 0.96
HDAC4P56524 SCO2-203ENST00000535425 1002 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
HDAC4P56524 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
HDAC4P56524 ALDH3A2-224ENST00000626500 995 ntTSL 5 BASIC21.05■□□□□ 0.96
HDAC4P56524 DMRTA2-202ENST00000418121 2840 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
HDAC4P56524 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
HDAC4P56524 OTUB1-210ENST00000541478 1803 ntTSL 5 BASIC21.05■□□□□ 0.96
HDAC4P56524 SENP5-204ENST00000445299 2491 ntTSL 2 BASIC21.05■□□□□ 0.96
HDAC4P56524 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
HDAC4P56524 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC21.05■□□□□ 0.96
HDAC4P56524 MGAT5B-209ENST00000569840 4492 ntAPPRIS ALT1 TSL 5 BASIC21.05■□□□□ 0.96
HDAC4P56524 NEK3-208ENST00000618534 2414 ntAPPRIS P2 TSL 5 BASIC21.05■□□□□ 0.96
HDAC4P56524 SMARCD2-203ENST00000448276 2716 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
HDAC4P56524 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
HDAC4P56524 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC21.05■□□□□ 0.96
HDAC4P56524 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC21.05■□□□□ 0.96
HDAC4P56524 ATG101-201ENST00000336854 1439 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
HDAC4P56524 LSM12P1-201ENST00000411836 588 ntBASIC21.04■□□□□ 0.96
HDAC4P56524 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
HDAC4P56524 TMEM218-207ENST00000528724 1117 ntTSL 5 BASIC21.04■□□□□ 0.96
HDAC4P56524 TMEM218-214ENST00000532156 954 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
HDAC4P56524 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
HDAC4P56524 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC21.04■□□□□ 0.96
HDAC4P56524 IDH1-205ENST00000446179 2298 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
HDAC4P56524 NAP1L4-212ENST00000526115 1941 ntTSL 2 BASIC21.04■□□□□ 0.96
HDAC4P56524 PHOSPHO1-201ENST00000310544 1816 ntAPPRIS P1 TSL 2 BASIC21.04■□□□□ 0.96
HDAC4P56524 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC21.04■□□□□ 0.96
HDAC4P56524 NR1H2-211ENST00000599105 1830 ntAPPRIS ALT2 TSL 5 BASIC21.04■□□□□ 0.96
HDAC4P56524 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC21.04■□□□□ 0.96
HDAC4P56524 AL391422.3-201ENST00000603791 2761 ntBASIC21.03■□□□□ 0.96
HDAC4P56524 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HDAC4P56524 C7orf43-201ENST00000316937 2520 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HDAC4P56524 MATR3-206ENST00000503811 2518 ntTSL 2 BASIC21.03■□□□□ 0.96
HDAC4P56524 GLT1D1-204ENST00000442111 2995 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
HDAC4P56524 ASCL5-201ENST00000449188 2026 ntAPPRIS P1 TSL 3 BASIC21.03■□□□□ 0.96
HDAC4P56524 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
HDAC4P56524 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC21.03■□□□□ 0.96
HDAC4P56524 SHISA7-201ENST00000376325 6033 ntAPPRIS P2 TSL 2 BASIC21.03■□□□□ 0.96
HDAC4P56524 JDP2-201ENST00000267569 1700 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
HDAC4P56524 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC21.03■□□□□ 0.96
HDAC4P56524 PTBP1P-201ENST00000554374 1601 ntBASIC21.03■□□□□ 0.96
HDAC4P56524 TNFAIP2-209ENST00000560869 4683 ntAPPRIS P1 TSL 5 BASIC21.03■□□□□ 0.96
HDAC4P56524 ACHE-203ENST00000411582 2179 ntTSL 1 (best) BASIC21.03■□□□□ 0.96
HDAC4P56524 DLG3-201ENST00000194900 6112 ntAPPRIS ALT2 TSL 5 BASIC21.03■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 49.6 ms