Protein–RNA interactions for Protein: P55317

FOXA1, Hepatocyte nuclear factor 3-alpha, humanhuman

Predictions only

Length 472 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
FOXA1P55317 FAIM-202ENST00000360570 1157 ntAPPRIS ALT1 TSL 3 BASIC19.53■□□□□ 0.72
FOXA1P55317 AC009086.2-201ENST00000449759 610 ntAPPRIS P1 TSL 3 BASIC19.53■□□□□ 0.72
FOXA1P55317 TERF1P5-201ENST00000477545 1207 ntBASIC19.53■□□□□ 0.72
FOXA1P55317 FRMD8-208ENST00000531296 366 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
FOXA1P55317 AC068385.1-201ENST00000533218 409 ntTSL 3 BASIC19.53■□□□□ 0.72
FOXA1P55317 BRI3-207ENST00000539286 699 ntTSL 2 BASIC19.53■□□□□ 0.72
FOXA1P55317 SNAP23-214ENST00000567094 834 ntTSL 3 BASIC19.53■□□□□ 0.72
FOXA1P55317 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC19.53■□□□□ 0.72
FOXA1P55317 AC008750.8-201ENST00000600067 551 ntAPPRIS P1 TSL 5 BASIC19.53■□□□□ 0.72
FOXA1P55317 FAM213B-204ENST00000419916 2749 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
FOXA1P55317 KCNK12-201ENST00000327876 6227 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
FOXA1P55317 IRGQ-205ENST00000602269 2210 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
FOXA1P55317 CCDC63-201ENST00000308208 1993 ntAPPRIS P3 TSL 2 BASIC19.53■□□□□ 0.72
FOXA1P55317 GABRD-201ENST00000378585 1961 ntAPPRIS P2 TSL 1 (best) BASIC19.53■□□□□ 0.72
FOXA1P55317 CLIP3-206ENST00000593074 2080 ntAPPRIS P1 TSL 2 BASIC19.53■□□□□ 0.72
FOXA1P55317 STK25-205ENST00000405883 1904 ntTSL 2 BASIC19.53■□□□□ 0.72
FOXA1P55317 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
FOXA1P55317 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
FOXA1P55317 MARK2-208ENST00000508192 2924 ntAPPRIS P3 TSL 5 BASIC19.52■□□□□ 0.72
FOXA1P55317 ENTPD5-206ENST00000556242 1437 ntTSL 5 BASIC19.52■□□□□ 0.72
FOXA1P55317 UBE2B-201ENST00000265339 2515 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
FOXA1P55317 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
FOXA1P55317 MVB12A-212ENST00000543795 1154 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.72
FOXA1P55317 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC19.52■□□□□ 0.72
FOXA1P55317 AC010536.3-201ENST00000620306 533 ntBASIC19.52■□□□□ 0.72
FOXA1P55317 SUGCT-202ENST00000401647 1369 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
FOXA1P55317 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC19.52■□□□□ 0.72
FOXA1P55317 GLT8D1-213ENST00000491606 1577 ntAPPRIS P1 TSL 5 BASIC19.52■□□□□ 0.71
FOXA1P55317 ST3GAL3-239ENST00000545417 1667 ntTSL 5 BASIC19.52■□□□□ 0.71
FOXA1P55317 GLB1-201ENST00000307363 2616 ntAPPRIS P4 TSL 1 (best) BASIC19.52■□□□□ 0.71
FOXA1P55317 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
FOXA1P55317 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
FOXA1P55317 SHROOM1-202ENST00000378676 2352 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
FOXA1P55317 DMRT2-205ENST00000382255 2367 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
FOXA1P55317 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
FOXA1P55317 NLRP6-201ENST00000312165 2679 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
FOXA1P55317 TUBG1-201ENST00000251413 1611 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
FOXA1P55317 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC19.51■□□□□ 0.71
FOXA1P55317 PRPS1-203ENST00000372428 1748 ntTSL 2 BASIC19.51■□□□□ 0.71
FOXA1P55317 TXNRD2-203ENST00000400519 3155 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
FOXA1P55317 LIMS2-207ENST00000409808 2315 ntAPPRIS ALT1 TSL 5 BASIC19.51■□□□□ 0.71
FOXA1P55317 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
FOXA1P55317 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC19.51■□□□□ 0.71
FOXA1P55317 HCFC1R1-201ENST00000248089 965 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
FOXA1P55317 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC19.51■□□□□ 0.71
FOXA1P55317 ATP6V0B-205ENST00000472174 1298 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
FOXA1P55317 HCFC1R1-207ENST00000574980 845 ntTSL 5 BASIC19.51■□□□□ 0.71
FOXA1P55317 AL356652.1-201ENST00000615962 565 ntBASIC19.51■□□□□ 0.71
FOXA1P55317 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC19.51■□□□□ 0.71
FOXA1P55317 AVPI1-201ENST00000370626 1457 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
FOXA1P55317 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
FOXA1P55317 ACBD4-203ENST00000398322 1986 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
FOXA1P55317 NETO1-207ENST00000583169 2357 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
FOXA1P55317 VSTM2A-203ENST00000404951 2521 ntTSL 5 BASIC19.51■□□□□ 0.71
FOXA1P55317 ACADVL-203ENST00000356839 2323 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
FOXA1P55317 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
FOXA1P55317 TMEM121B-201ENST00000331437 4954 ntAPPRIS P3 BASIC19.51■□□□□ 0.71
FOXA1P55317 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC19.51■□□□□ 0.71
FOXA1P55317 AC087633.2-202ENST00000565166 1439 ntBASIC19.51■□□□□ 0.71
FOXA1P55317 MAN2C1-244ENST00000618257 1346 ntTSL 5 BASIC19.51■□□□□ 0.71
FOXA1P55317 ZNF652-202ENST00000430262 4701 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
FOXA1P55317 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
FOXA1P55317 DVL3-203ENST00000431765 2294 ntTSL 5 BASIC19.5■□□□□ 0.71
FOXA1P55317 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
FOXA1P55317 CYP21A1P-202ENST00000354927 1481 ntBASIC19.5■□□□□ 0.71
FOXA1P55317 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
FOXA1P55317 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
FOXA1P55317 BHLHA9-201ENST00000391429 902 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
FOXA1P55317 AC097381.1-201ENST00000429019 1296 ntBASIC19.5■□□□□ 0.71
FOXA1P55317 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
FOXA1P55317 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
FOXA1P55317 IDH2-203ENST00000559482 1278 ntTSL 5 BASIC19.5■□□□□ 0.71
FOXA1P55317 PYCARD-AS1-201ENST00000561916 1095 ntTSL 2 BASIC19.5■□□□□ 0.71
FOXA1P55317 NMRAL1-212ENST00000574425 1240 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
FOXA1P55317 AC016405.3-201ENST00000607710 860 ntBASIC19.5■□□□□ 0.71
FOXA1P55317 DISC1-204ENST00000366633 2676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
FOXA1P55317 DISC1-214ENST00000539444 2658 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
FOXA1P55317 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
FOXA1P55317 ANKRD65-204ENST00000520296 1632 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
FOXA1P55317 HOXA11-201ENST00000006015 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
FOXA1P55317 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC19.5■□□□□ 0.71
FOXA1P55317 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
FOXA1P55317 CPEB1-214ENST00000617522 2220 ntTSL 5 BASIC19.49■□□□□ 0.71
FOXA1P55317 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC19.49■□□□□ 0.71
FOXA1P55317 C3orf18-205ENST00000441239 1490 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
FOXA1P55317 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC19.49■□□□□ 0.71
FOXA1P55317 SPATA22-214ENST00000575375 1374 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
FOXA1P55317 ATP5C1-202ENST00000356708 1163 ntAPPRIS ALT1 TSL 1 (best) BASIC19.49■□□□□ 0.71
FOXA1P55317 STX7-201ENST00000367937 1090 ntTSL 5 BASIC19.49■□□□□ 0.71
FOXA1P55317 MPRIP-203ENST00000395806 527 ntTSL 3 BASIC19.49■□□□□ 0.71
FOXA1P55317 CASP6-205ENST00000505486 538 ntTSL 4 BASIC19.49■□□□□ 0.71
FOXA1P55317 SLC25A45-206ENST00000526432 894 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
FOXA1P55317 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC19.49■□□□□ 0.71
FOXA1P55317 DBI-210ENST00000542275 757 ntTSL 5 BASIC19.49■□□□□ 0.71
FOXA1P55317 AL591742.1-201ENST00000604433 565 ntBASIC19.49■□□□□ 0.71
FOXA1P55317 GPR50-AS1-201ENST00000454196 1620 ntTSL 2 BASIC19.49■□□□□ 0.71
FOXA1P55317 C3orf33-201ENST00000340171 1884 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
FOXA1P55317 BRSK1-201ENST00000309383 3079 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
FOXA1P55317 EIF2B1-204ENST00000537073 1768 ntTSL 2 BASIC19.49■□□□□ 0.71
FOXA1P55317 CSNK1D-203ENST00000392334 2047 ntAPPRIS ALT1 TSL 1 (best) BASIC19.49■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 14.1 ms