Protein–RNA interactions for Protein: P43699

NKX2-1, Homeobox protein Nkx-2.1, humanhuman

Predicted RBP Predictions only

Length 371 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NKX2-1P43699 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
NKX2-1P43699 VCPKMT-202ENST00000395860 1761 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
NKX2-1P43699 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC16.48■□□□□ 0.23
NKX2-1P43699 IGFLR1-201ENST00000246532 1645 ntAPPRIS P2 TSL 1 (best) BASIC16.48■□□□□ 0.23
NKX2-1P43699 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC16.48■□□□□ 0.23
NKX2-1P43699 UNKL-204ENST00000389221 5116 ntAPPRIS ALT2 TSL 5 BASIC16.48■□□□□ 0.23
NKX2-1P43699 MATN4-202ENST00000360607 2127 ntTSL 1 (best) BASIC16.48■□□□□ 0.23
NKX2-1P43699 MAPK9-207ENST00000452135 4815 ntAPPRIS P5 TSL 5 BASIC16.48■□□□□ 0.23
NKX2-1P43699 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC16.48■□□□□ 0.23
NKX2-1P43699 FAM124A-202ENST00000322475 4761 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
NKX2-1P43699 ARFRP1-208ENST00000612256 2974 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
NKX2-1P43699 PYGO2-201ENST00000368456 1306 ntTSL 2 BASIC16.47■□□□□ 0.23
NKX2-1P43699 PHOSPHO1-206ENST00000514112 1587 ntTSL 1 (best) BASIC16.47■□□□□ 0.23
NKX2-1P43699 ANKDD1B-204ENST00000601380 2569 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
NKX2-1P43699 ACSS3-201ENST00000261206 2666 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
NKX2-1P43699 COL16A1-203ENST00000373672 5736 ntAPPRIS P1 TSL 5 BASIC16.47■□□□□ 0.23
NKX2-1P43699 LIN54-209ENST00000510557 2257 ntTSL 2 BASIC16.47■□□□□ 0.23
NKX2-1P43699 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC16.47■□□□□ 0.23
NKX2-1P43699 SRM-201ENST00000376957 1266 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
NKX2-1P43699 SDCBP-204ENST00000447182 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC16.47■□□□□ 0.23
NKX2-1P43699 TPT1-AS1-211ENST00000520622 604 ntTSL 4 BASIC16.47■□□□□ 0.23
NKX2-1P43699 ZNF696-205ENST00000521537 705 ntTSL 2 BASIC16.47■□□□□ 0.23
NKX2-1P43699 AC053503.5-201ENST00000601508 636 ntBASIC16.47■□□□□ 0.23
NKX2-1P43699 TCEA1-214ENST00000640382 1234 ntTSL 5 BASIC16.47■□□□□ 0.23
NKX2-1P43699 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC16.47■□□□□ 0.23
NKX2-1P43699 NTRK1-201ENST00000358660 2492 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
NKX2-1P43699 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC16.47■□□□□ 0.23
NKX2-1P43699 GABRD-213ENST00000640067 1632 ntAPPRIS ALT2 TSL 5 BASIC16.47■□□□□ 0.23
NKX2-1P43699 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
NKX2-1P43699 TMEM53-202ENST00000372237 2310 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
NKX2-1P43699 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC16.47■□□□□ 0.23
NKX2-1P43699 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC16.47■□□□□ 0.23
NKX2-1P43699 CDH5-204ENST00000563425 1932 ntTSL 5 BASIC16.47■□□□□ 0.23
NKX2-1P43699 C14orf79-202ENST00000547315 2370 ntAPPRIS P2 TSL 1 (best) BASIC16.46■□□□□ 0.23
NKX2-1P43699 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
NKX2-1P43699 GAS8-202ENST00000536122 1687 ntTSL 2 BASIC16.46■□□□□ 0.23
NKX2-1P43699 RAB1A-202ENST00000409751 1333 ntTSL 5 BASIC16.46■□□□□ 0.23
NKX2-1P43699 GNB1-201ENST00000378609 3132 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
NKX2-1P43699 HSF4-215ENST00000521374 1515 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
NKX2-1P43699 SCO2-201ENST00000252785 992 ntAPPRIS P1 TSL 2 BASIC16.46■□□□□ 0.23
NKX2-1P43699 C4orf36-201ENST00000295898 881 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
NKX2-1P43699 EIF4EBP1-201ENST00000338825 1020 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
NKX2-1P43699 YIF1A-201ENST00000359461 943 ntTSL 2 BASIC16.46■□□□□ 0.23
NKX2-1P43699 NAXE-201ENST00000368233 1012 ntTSL 2 BASIC16.46■□□□□ 0.23
NKX2-1P43699 MRPL41-201ENST00000371443 1262 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
NKX2-1P43699 YIF1A-203ENST00000376901 1124 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
NKX2-1P43699 IL15RA-209ENST00000397255 759 ntAPPRIS ALT2 TSL 5 BASIC16.46■□□□□ 0.23
NKX2-1P43699 AL161908.1-203ENST00000425370 506 ntTSL 2 BASIC16.46■□□□□ 0.23
NKX2-1P43699 IL15RA-216ENST00000530685 660 ntTSL 5 BASIC16.46■□□□□ 0.23
NKX2-1P43699 TRAF7-203ENST00000565383 799 ntTSL 5 BASIC16.46■□□□□ 0.23
NKX2-1P43699 HOMER3-206ENST00000594439 982 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
NKX2-1P43699 AC090241.2-201ENST00000602329 432 ntTSL 4 BASIC16.46■□□□□ 0.23
NKX2-1P43699 MIR663AHG-233ENST00000609248 830 ntTSL 5 BASIC16.46■□□□□ 0.23
NKX2-1P43699 MIR2861-201ENST00000636310 90 ntBASIC16.46■□□□□ 0.23
NKX2-1P43699 MORF4L1-201ENST00000331268 2359 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
NKX2-1P43699 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC16.46■□□□□ 0.23
NKX2-1P43699 SDR39U1-208ENST00000554698 1364 ntTSL 1 (best) BASIC16.46■□□□□ 0.23
NKX2-1P43699 POLI-202ENST00000406285 2030 ntTSL 2 BASIC16.46■□□□□ 0.23
NKX2-1P43699 WT1-205ENST00000452863 2768 ntAPPRIS ALT2 TSL 1 (best) BASIC16.46■□□□□ 0.23
NKX2-1P43699 PGS1-201ENST00000262764 2201 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.23
NKX2-1P43699 RBM15B-201ENST00000563281 6641 ntAPPRIS P1 BASIC16.46■□□□□ 0.22
NKX2-1P43699 ADAMTS8-201ENST00000257359 4010 ntAPPRIS P1 TSL 1 (best) BASIC16.46■□□□□ 0.22
NKX2-1P43699 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC16.46■□□□□ 0.22
NKX2-1P43699 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
NKX2-1P43699 ARID1B-203ENST00000350026 7962 ntAPPRIS P3 TSL 1 (best) BASIC16.45■□□□□ 0.22
NKX2-1P43699 FXR2-201ENST00000250113 2957 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
NKX2-1P43699 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC16.45■□□□□ 0.22
NKX2-1P43699 ADCY6-206ENST00000550422 5877 ntTSL 2 BASIC16.45■□□□□ 0.22
NKX2-1P43699 RHOA-202ENST00000418115 2031 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
NKX2-1P43699 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC16.45■□□□□ 0.22
NKX2-1P43699 PCDHGB3-202ENST00000618934 2445 ntAPPRIS P1 BASIC16.45■□□□□ 0.22
NKX2-1P43699 SPTBN4-204ENST00000392025 8671 ntAPPRIS ALT1 TSL 5 BASIC16.45■□□□□ 0.22
NKX2-1P43699 EMC9-201ENST00000216799 835 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
NKX2-1P43699 PCSK1N-201ENST00000218230 1050 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
NKX2-1P43699 MAD2L2-204ENST00000376667 872 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
NKX2-1P43699 CHKB-AS1-201ENST00000380711 578 ntTSL 2 BASIC16.45■□□□□ 0.22
NKX2-1P43699 BX842568.3-201ENST00000418104 571 ntBASIC16.45■□□□□ 0.22
NKX2-1P43699 ERGIC1-206ENST00000519860 1000 ntTSL 3 BASIC16.45■□□□□ 0.22
NKX2-1P43699 AP006621.3-202ENST00000530083 765 ntTSL 3 BASIC16.45■□□□□ 0.22
NKX2-1P43699 TMEM218-215ENST00000532407 1103 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
NKX2-1P43699 EEF1DP3-203ENST00000566025 782 ntBASIC16.45■□□□□ 0.22
NKX2-1P43699 CENPH-201ENST00000283006 1389 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
NKX2-1P43699 PRR7-201ENST00000323249 1480 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
NKX2-1P43699 FAM216A-201ENST00000377673 1582 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
NKX2-1P43699 ACD-201ENST00000219251 2052 ntAPPRIS P3 TSL 2 BASIC16.45■□□□□ 0.22
NKX2-1P43699 AC005906.2-203ENST00000640962 2091 ntTSL 5 BASIC16.45■□□□□ 0.22
NKX2-1P43699 ACOT4-201ENST00000326303 2362 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
NKX2-1P43699 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
NKX2-1P43699 ADORA2A-201ENST00000337539 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
NKX2-1P43699 SEPT2-203ENST00000391971 3315 ntAPPRIS P1 TSL 1 (best) BASIC16.45■□□□□ 0.22
NKX2-1P43699 NPR3-204ENST00000434067 2715 ntTSL 5 BASIC16.45■□□□□ 0.22
NKX2-1P43699 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
NKX2-1P43699 EGFL7-203ENST00000371699 2125 ntAPPRIS P1 TSL 2 BASIC16.45■□□□□ 0.22
NKX2-1P43699 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC16.45■□□□□ 0.22
NKX2-1P43699 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC16.45■□□□□ 0.22
NKX2-1P43699 DGKI-202ENST00000424189 4163 ntAPPRIS ALT2 TSL 5 BASIC16.45■□□□□ 0.22
NKX2-1P43699 SEMA3B-210ENST00000611067 2292 ntAPPRIS ALT2 TSL 1 (best) BASIC16.44■□□□□ 0.22
NKX2-1P43699 STARD3-219ENST00000580611 1989 ntTSL 5 BASIC16.44■□□□□ 0.22
NKX2-1P43699 MAFG-AS1-201ENST00000582106 1895 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
NKX2-1P43699 HMCES-203ENST00000417226 1490 ntTSL 1 (best) BASIC16.44■□□□□ 0.22
Retrieved 100 of 98,524 protein–RNA pairs in 19.8 ms