Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 ADAM9-203ENST00000466936 2053 ntTSL 2 BASIC21.29■■□□□ 1
BDNFP23560 CDKN1C-203ENST00000430149 1570 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
BDNFP23560 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
BDNFP23560 RER1-204ENST00000378518 522 ntTSL 3 BASIC21.29■■□□□ 1
BDNFP23560 POM121L13P-201ENST00000422362 380 ntBASIC21.29■■□□□ 1
BDNFP23560 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC21.29■■□□□ 1
BDNFP23560 AC105020.4-201ENST00000569467 563 ntTSL 4 BASIC21.29■■□□□ 1
BDNFP23560 PRKCD-202ENST00000394729 2810 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
BDNFP23560 USP48-205ENST00000421625 2818 ntTSL 2 BASIC21.29■■□□□ 1
BDNFP23560 PARD3-214ENST00000545693 5962 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
BDNFP23560 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC21.29■■□□□ 1
BDNFP23560 CAV3-201ENST00000343849 1431 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
BDNFP23560 NISCH-201ENST00000345716 5238 ntAPPRIS P3 TSL 1 (best) BASIC21.29■■□□□ 1
BDNFP23560 DBNL-207ENST00000440166 1415 ntTSL 2 BASIC21.29■■□□□ 1
BDNFP23560 CNR1-203ENST00000369501 6031 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
BDNFP23560 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
BDNFP23560 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC21.28■■□□□ 1
BDNFP23560 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC21.28■■□□□ 1
BDNFP23560 ERMP1-202ENST00000339450 5376 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
BDNFP23560 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC21.28■■□□□ 1
BDNFP23560 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC21.28■■□□□ 1
BDNFP23560 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC21.28■■□□□ 1
BDNFP23560 PTGER3-203ENST00000354608 1470 ntAPPRIS ALT2 TSL 5 BASIC21.28■■□□□ 1
BDNFP23560 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC21.28■■□□□ 1
BDNFP23560 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
BDNFP23560 AC023632.3-201ENST00000521633 145 ntBASIC21.28■■□□□ 1
BDNFP23560 AC120498.8-201ENST00000614275 531 ntBASIC21.28■■□□□ 1
BDNFP23560 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC21.28■■□□□ 1
BDNFP23560 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC21.28■■□□□ 1
BDNFP23560 PTDSS2-201ENST00000308020 2445 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
BDNFP23560 ETV7-205ENST00000538992 1434 ntTSL 2 BASIC21.28■■□□□ 1
BDNFP23560 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.28■■□□□ 1
BDNFP23560 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC21.28■■□□□ 1
BDNFP23560 KIF12-202ENST00000468460 2162 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
BDNFP23560 RNASET2-214ENST00000620173 1391 ntTSL 5 BASIC21.27■■□□□ 1
BDNFP23560 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC21.27■■□□□ 1
BDNFP23560 NDUFA8-201ENST00000373768 844 ntAPPRIS P1 TSL 1 (best) BASIC21.27■■□□□ 1
BDNFP23560 RPS2P52-201ENST00000469610 820 ntBASIC21.27■■□□□ 1
BDNFP23560 ZNF467-202ENST00000484747 913 ntTSL 2 BASIC21.27■■□□□ 1
BDNFP23560 THAP6-213ENST00000514480 1161 ntAPPRIS P3 TSL 1 (best) BASIC21.27■■□□□ 1
BDNFP23560 TMEM191C-212ENST00000536718 480 ntAPPRIS ALT2 TSL 5 BASIC21.27■■□□□ 1
BDNFP23560 OVCH1-AS1-203ENST00000551108 963 ntTSL 2 BASIC21.27■■□□□ 1
BDNFP23560 MIR381HG-201ENST00000553692 425 ntTSL 3 BASIC21.27■■□□□ 1
BDNFP23560 AC069544.1-201ENST00000609399 999 ntBASIC21.27■■□□□ 1
BDNFP23560 PARD3-210ENST00000374794 5669 ntAPPRIS ALT2 TSL 1 (best) BASIC21.27■■□□□ 1
BDNFP23560 SH3RF3-201ENST00000309415 5803 ntAPPRIS P1 TSL 5 BASIC21.27■■□□□ 1
BDNFP23560 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC21.27■□□□□ 0.99
BDNFP23560 ME2-216ENST00000639850 2331 ntTSL 5 BASIC21.27■□□□□ 0.99
BDNFP23560 HOXB2-201ENST00000330070 1562 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
BDNFP23560 FDFT1-209ENST00000525900 1596 ntTSL 5 BASIC21.27■□□□□ 0.99
BDNFP23560 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC21.27■□□□□ 0.99
BDNFP23560 HHIPL1-202ENST00000357223 2241 ntTSL 1 (best) BASIC21.27■□□□□ 0.99
BDNFP23560 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC21.27■□□□□ 0.99
BDNFP23560 NR5A1-202ENST00000373588 3104 ntAPPRIS P1 TSL 1 (best) BASIC21.27■□□□□ 0.99
BDNFP23560 CCNYL1-202ENST00000339882 2619 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
BDNFP23560 AC010173.1-201ENST00000549023 1453 ntTSL 2 BASIC21.26■□□□□ 0.99
BDNFP23560 PTBP1P-201ENST00000554374 1601 ntBASIC21.26■□□□□ 0.99
BDNFP23560 ODC1-201ENST00000234111 2653 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
BDNFP23560 OXER1-201ENST00000378661 1781 ntAPPRIS P1 BASIC21.26■□□□□ 0.99
BDNFP23560 PRDX1-201ENST00000262746 1234 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
BDNFP23560 CABP2-202ENST00000353903 789 ntAPPRIS P1 TSL 5 BASIC21.26■□□□□ 0.99
BDNFP23560 YWHAZ-209ENST00000419477 891 ntAPPRIS P1 TSL 3 BASIC21.26■□□□□ 0.99
BDNFP23560 GCSHP5-201ENST00000443090 522 ntBASIC21.26■□□□□ 0.99
BDNFP23560 AL158047.1-201ENST00000445918 881 ntBASIC21.26■□□□□ 0.99
BDNFP23560 ABHD17AP6-201ENST00000458502 1044 ntBASIC21.26■□□□□ 0.99
BDNFP23560 ZNF529-AS1-202ENST00000475219 1033 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
BDNFP23560 HES2-206ENST00000489730 730 ntTSL 2 BASIC21.26■□□□□ 0.99
BDNFP23560 AC142381.4-202ENST00000563973 229 ntBASIC21.26■□□□□ 0.99
BDNFP23560 AC009052.1-201ENST00000567090 298 ntTSL 3 BASIC21.26■□□□□ 0.99
BDNFP23560 NAT14-204ENST00000591590 1011 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
BDNFP23560 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC21.26■□□□□ 0.99
BDNFP23560 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC21.26■□□□□ 0.99
BDNFP23560 ITGB1BP1-203ENST00000359712 2126 ntTSL 2 BASIC21.26■□□□□ 0.99
BDNFP23560 DET1-201ENST00000268148 2267 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
BDNFP23560 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC21.26■□□□□ 0.99
BDNFP23560 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC21.26■□□□□ 0.99
BDNFP23560 H19-201ENST00000411754 1788 ntTSL 5 BASIC21.25■□□□□ 0.99
BDNFP23560 APLP1-203ENST00000586861 2052 ntTSL 2 BASIC21.25■□□□□ 0.99
BDNFP23560 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC21.25■□□□□ 0.99
BDNFP23560 ISYNA1-201ENST00000338128 2420 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
BDNFP23560 ACOT8-201ENST00000217455 1168 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
BDNFP23560 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
BDNFP23560 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC21.25■□□□□ 0.99
BDNFP23560 ALDH16A1-202ENST00000455361 2470 ntTSL 2 BASIC21.25■□□□□ 0.99
BDNFP23560 THEM4-205ENST00000489410 643 ntTSL 2 BASIC21.25■□□□□ 0.99
BDNFP23560 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC21.25■□□□□ 0.99
BDNFP23560 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
BDNFP23560 ANAPC11-223ENST00000612413 964 ntTSL 3 BASIC21.25■□□□□ 0.99
BDNFP23560 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC21.25■□□□□ 0.99
BDNFP23560 CD24-208ENST00000622315 825 ntAPPRIS ALT2 TSL 2 BASIC21.25■□□□□ 0.99
BDNFP23560 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC21.25■□□□□ 0.99
BDNFP23560 AC066615.1-201ENST00000640911 628 ntBASIC21.25■□□□□ 0.99
BDNFP23560 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC21.25■□□□□ 0.99
BDNFP23560 AP006284.1-201ENST00000527620 2210 ntTSL 2 BASIC21.25■□□□□ 0.99
BDNFP23560 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC21.25■□□□□ 0.99
BDNFP23560 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC21.25■□□□□ 0.99
BDNFP23560 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC21.25■□□□□ 0.99
BDNFP23560 TMEM259-202ENST00000356663 2748 ntAPPRIS ALT2 TSL 1 (best) BASIC21.25■□□□□ 0.99
BDNFP23560 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC21.25■□□□□ 0.99
BDNFP23560 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.24■□□□□ 0.99
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms