Protein–RNA interactions for Protein: P18848

ATF4, Cyclic AMP-dependent transcription factor ATF-4, humanhuman

Predicted RBP Predictions only

Length 351 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
ATF4P18848 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC16.8■□□□□ 0.28
ATF4P18848 B4GALT2-202ENST00000356836 2629 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
ATF4P18848 NR4A1-203ENST00000394824 2639 ntAPPRIS P1 TSL 5 BASIC16.8■□□□□ 0.28
ATF4P18848 CCNG2-204ENST00000502280 1459 ntAPPRIS P1 TSL 2 BASIC16.8■□□□□ 0.28
ATF4P18848 PHKA1-201ENST00000339490 6121 ntAPPRIS ALT1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ATF4P18848 ZNF302-206ENST00000505242 2849 ntAPPRIS P3 TSL 1 (best) BASIC16.79■□□□□ 0.28
ATF4P18848 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
ATF4P18848 C7orf43-206ENST00000456769 2046 ntTSL 2 BASIC16.79■□□□□ 0.28
ATF4P18848 PACS1-201ENST00000320580 4392 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
ATF4P18848 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
ATF4P18848 SLC16A5-201ENST00000329783 1934 ntAPPRIS P2 TSL 1 (best) BASIC16.79■□□□□ 0.28
ATF4P18848 SLC35F3-202ENST00000366618 2891 ntAPPRIS P3 TSL 2 BASIC16.79■□□□□ 0.28
ATF4P18848 ASB1-202ENST00000409297 878 ntTSL 5 BASIC16.79■□□□□ 0.28
ATF4P18848 RPP21-222ENST00000433076 577 ntTSL 2 BASIC16.79■□□□□ 0.28
ATF4P18848 C17orf74-202ENST00000574034 1287 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
ATF4P18848 MIR3621-201ENST00000580529 85 ntBASIC16.79■□□□□ 0.28
ATF4P18848 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC16.79■□□□□ 0.28
ATF4P18848 CHRNA4-207ENST00000615287 5643 ntTSL 5 BASIC16.79■□□□□ 0.28
ATF4P18848 ARID3A-201ENST00000263620 5941 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ATF4P18848 FOXD4L1-201ENST00000306507 2491 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
ATF4P18848 PLK3-201ENST00000372201 2492 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ATF4P18848 ZPBP2-201ENST00000348931 1543 ntAPPRIS P4 TSL 1 (best) BASIC16.79■□□□□ 0.28
ATF4P18848 KIAA1147-202ENST00000536163 7296 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ATF4P18848 ZNF853-201ENST00000457543 3857 ntAPPRIS P1 TSL 3 BASIC16.79■□□□□ 0.28
ATF4P18848 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC16.79■□□□□ 0.28
ATF4P18848 YTHDC2-207ENST00000515883 2629 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
ATF4P18848 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.79■□□□□ 0.28
ATF4P18848 BORCS6-201ENST00000389017 2575 ntAPPRIS P1 BASIC16.79■□□□□ 0.28
ATF4P18848 WIPF1-206ENST00000409891 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC16.79■□□□□ 0.28
ATF4P18848 NID1-202ENST00000366595 5412 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
ATF4P18848 AC008894.3-201ENST00000624324 3103 ntBASIC16.79■□□□□ 0.28
ATF4P18848 KDM6A-212ENST00000543216 5655 ntTSL 1 (best) BASIC16.79■□□□□ 0.28
ATF4P18848 SKOR1-202ENST00000380035 3675 ntAPPRIS ALT2 TSL 5 BASIC16.78■□□□□ 0.28
ATF4P18848 CTU2-201ENST00000312060 1672 ntAPPRIS P3 TSL 5 BASIC16.78■□□□□ 0.28
ATF4P18848 PLPP2-202ENST00000327790 1397 ntTSL 5 BASIC16.78■□□□□ 0.28
ATF4P18848 PABPC4-204ENST00000372862 2470 ntTSL 5 BASIC16.78■□□□□ 0.28
ATF4P18848 SLC34A3-202ENST00000538474 2162 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
ATF4P18848 ZNF281-201ENST00000294740 4891 ntAPPRIS P3 TSL 1 (best) BASIC16.78■□□□□ 0.28
ATF4P18848 TMEM109-201ENST00000227525 2413 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ATF4P18848 TOX2-201ENST00000341197 1880 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
ATF4P18848 LINC01960-201ENST00000563759 1884 ntBASIC16.78■□□□□ 0.28
ATF4P18848 JMJD1C-AS1-201ENST00000609436 1335 ntBASIC16.78■□□□□ 0.28
ATF4P18848 ULK2-201ENST00000361658 3908 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ATF4P18848 TANGO2-210ENST00000432883 2084 ntTSL 2 BASIC16.78■□□□□ 0.28
ATF4P18848 RITA1-201ENST00000548278 2053 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ATF4P18848 PLA2R1-202ENST00000392771 5160 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
ATF4P18848 TMEM134-202ENST00000393877 823 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
ATF4P18848 CLTA-206ENST00000466396 695 ntTSL 2 BASIC16.78■□□□□ 0.28
ATF4P18848 DUX4L4-201ENST00000566884 1269 ntBASIC16.78■□□□□ 0.28
ATF4P18848 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC16.78■□□□□ 0.28
ATF4P18848 GOLGA2P6-201ENST00000340929 2049 ntBASIC16.78■□□□□ 0.28
ATF4P18848 CHRNA3-202ENST00000348639 2030 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
ATF4P18848 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC16.78■□□□□ 0.28
ATF4P18848 FBXL16-202ENST00000397621 3547 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
ATF4P18848 B3GALNT1-202ENST00000392779 3221 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
ATF4P18848 TMEM119-201ENST00000392806 2707 ntAPPRIS P2 TSL 1 (best) BASIC16.78■□□□□ 0.28
ATF4P18848 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC16.78■□□□□ 0.28
ATF4P18848 B4GALT4-202ENST00000393765 2459 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ATF4P18848 CCM2-207ENST00000475551 2471 ntAPPRIS ALT2 TSL 2 BASIC16.78■□□□□ 0.28
ATF4P18848 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ATF4P18848 PCDHB2-202ENST00000622947 2231 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
ATF4P18848 AC087742.1-201ENST00000575880 1738 ntBASIC16.78■□□□□ 0.28
ATF4P18848 SLC35F5-201ENST00000245680 4412 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ATF4P18848 AC112907.3-201ENST00000577781 2400 ntBASIC16.78■□□□□ 0.28
ATF4P18848 UBAP1L-203ENST00000559089 1694 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ATF4P18848 SLC8A2-201ENST00000236877 5234 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ATF4P18848 ABCB9-202ENST00000344275 2394 ntTSL 1 (best) BASIC16.78■□□□□ 0.28
ATF4P18848 ZNF48-205ENST00000613509 3339 ntAPPRIS P1 TSL 2 BASIC16.78■□□□□ 0.28
ATF4P18848 SLC9A6-201ENST00000370695 4725 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ATF4P18848 PHLDB3-201ENST00000292140 2591 ntAPPRIS P1 TSL 5 BASIC16.78■□□□□ 0.28
ATF4P18848 AVPR2-201ENST00000337474 1622 ntAPPRIS P1 TSL 1 (best) BASIC16.78■□□□□ 0.28
ATF4P18848 ZNF644-201ENST00000337393 5763 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
ATF4P18848 GPC1-202ENST00000420138 1835 ntTSL 5 BASIC16.77■□□□□ 0.28
ATF4P18848 THAP7-AS1-203ENST00000452284 2298 ntTSL 2 BASIC16.77■□□□□ 0.28
ATF4P18848 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
ATF4P18848 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC16.77■□□□□ 0.28
ATF4P18848 SH2B1-216ENST00000618521 2935 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
ATF4P18848 TM9SF1-206ENST00000528669 2425 ntTSL 5 BASIC16.77■□□□□ 0.28
ATF4P18848 CHPF-203ENST00000535926 2634 ntTSL 2 BASIC16.77■□□□□ 0.28
ATF4P18848 LDLRAD4-211ENST00000587757 2171 ntTSL 2 BASIC16.77■□□□□ 0.28
ATF4P18848 CYP1B1-207ENST00000614273 2174 ntAPPRIS P1 TSL 5 BASIC16.77■□□□□ 0.28
ATF4P18848 SYT15-202ENST00000374323 6428 ntTSL 2 BASIC16.77■□□□□ 0.28
ATF4P18848 PEMT-201ENST00000255389 1013 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
ATF4P18848 EGLN2-201ENST00000303961 2102 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
ATF4P18848 AL356740.2-201ENST00000601559 647 ntBASIC16.77■□□□□ 0.28
ATF4P18848 SKIDA1-202ENST00000449193 6598 ntAPPRIS P2 TSL 3 BASIC16.77■□□□□ 0.28
ATF4P18848 QPRT-202ENST00000395384 2343 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.28
ATF4P18848 AC139713.2-201ENST00000641328 2723 ntBASIC16.77■□□□□ 0.28
ATF4P18848 NANOS2-201ENST00000341294 1657 ntAPPRIS P1 BASIC16.77■□□□□ 0.28
ATF4P18848 NAE1-204ENST00000394074 1654 ntTSL 5 BASIC16.77■□□□□ 0.28
ATF4P18848 MAP2K5-204ENST00000395476 1689 ntTSL 1 (best) BASIC16.77■□□□□ 0.28
ATF4P18848 LEFTY2-202ENST00000420304 2085 ntTSL 2 BASIC16.77■□□□□ 0.27
ATF4P18848 TOLLIP-201ENST00000263646 2283 ntTSL 5 BASIC16.77■□□□□ 0.27
ATF4P18848 XKR8-201ENST00000373884 2692 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
ATF4P18848 CFP-202ENST00000377005 1435 ntAPPRIS ALT2 TSL 1 (best) BASIC16.77■□□□□ 0.27
ATF4P18848 SH3RF3-AS1-201ENST00000567491 1604 ntBASIC16.77■□□□□ 0.27
ATF4P18848 RBBP7-202ENST00000380084 2036 ntTSL 2 BASIC16.77■□□□□ 0.27
ATF4P18848 IVNS1ABP-202ENST00000367498 4199 ntAPPRIS P1 TSL 1 (best) BASIC16.77■□□□□ 0.27
ATF4P18848 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC16.77■□□□□ 0.27
ATF4P18848 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC16.77■□□□□ 0.27
Retrieved 100 of 98,524 protein–RNA pairs in 62 ms