Protein–RNA interactions for Protein: P16989

YBX3, Y-box-binding protein 3, humanhuman

Known RBP eCLIP

Length 372 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3P16989 RPL36-202ENST00000394580 556 ntAPPRIS P1 TSL 1 (best) BASIC24.02■■□□□ 1.446e-58■■■□□ 16.1
YBX3P16989 CSNK2A2-203ENST00000563307 4978 ntTSL 312.81□□□□□ -0.362e-7■■■□□ 16.1
YBX3P16989 ZDHHC14-205ENST00000422910 2883 ntTSL 213.64□□□□□ -0.233e-15■■■□□ 16.1
YBX3P16989 SNU13-204ENST00000402458 462 ntTSL 3 BASIC16.92■□□□□ 0.36e-12■■■□□ 16.1
YBX3P16989 MPST-206ENST00000429360 1331 ntTSL 1 (best) BASIC35.96■■■■□ 3.355e-7■■■□□ 16.1
YBX3P16989 MPST-201ENST00000341116 1504 ntAPPRIS P1 TSL 5 BASIC33.46■■■□□ 2.955e-7■■■□□ 16.1
YBX3P16989 MPST-203ENST00000401419 1345 ntAPPRIS P1 TSL 1 (best) BASIC30.5■■■□□ 2.475e-7■■■□□ 16.1
YBX3P16989 MPST-204ENST00000404393 1329 ntTSL 5 BASIC28.09■■■□□ 2.095e-7■■■□□ 16.1
YBX3P16989 MPST-205ENST00000404802 1453 ntAPPRIS P1 TSL 3 BASIC27.94■■■□□ 2.065e-7■■■□□ 16.1
YBX3P16989 MPST-202ENST00000397225 2116 ntAPPRIS P1 TSL 2 BASIC23■■□□□ 1.275e-7■■■□□ 16.1
YBX3P16989 MPST-207ENST00000485587 5872 ntTSL 216.92■□□□□ 0.35e-7■■■□□ 16.1
YBX3P16989 SARAF-210ENST00000522055 582 ntTSL 327.88■■■□□ 2.054e-9■■■□□ 16.1
YBX3P16989 SARAF-202ENST00000517569 487 ntTSL 1 (best)25.02■■□□□ 1.64e-9■■■□□ 16.1
YBX3P16989 SARAF-205ENST00000518340 582 ntTSL 324.43■■□□□ 1.54e-9■■■□□ 16.1
YBX3P16989 SARAF-213ENST00000523761 566 ntTSL 424.43■■□□□ 1.54e-9■■■□□ 16.1
YBX3P16989 SARAF-207ENST00000521083 419 ntTSL 224.14■■□□□ 1.454e-9■■■□□ 16.1
YBX3P16989 SARAF-214ENST00000545648 1976 ntTSL 1 (best) BASIC22.72■■□□□ 1.234e-9■■■□□ 16.1
YBX3P16989 SARAF-203ENST00000518174 1981 ntTSL 522.07■■□□□ 1.124e-9■■■□□ 16.1
YBX3P16989 SARAF-206ENST00000520303 1803 ntTSL 1 (best)20.5■□□□□ 0.874e-9■■■□□ 16.1
YBX3P16989 SARAF-201ENST00000256255 2154 ntAPPRIS P1 TSL 1 (best) BASIC19.08■□□□□ 0.654e-9■■■□□ 16.1
YBX3P16989 ANXA5-206ENST00000511552 1036 ntTSL 330.65■■■□□ 2.54e-7■■■□□ 16.1
YBX3P16989 ANXA5-208ENST00000513523 582 ntTSL 317.74■□□□□ 0.434e-7■■■□□ 16.1
YBX3P16989 ANXA5-207ENST00000513428 868 ntTSL 217.23■□□□□ 0.354e-7■■■□□ 16.1
YBX3P16989 ANXA5-209ENST00000513728 447 ntTSL 317.23■□□□□ 0.354e-7■■■□□ 16.1
YBX3P16989 ANXA5-204ENST00000509016 556 ntTSL 411.63□□□□□ -0.554e-7■■■□□ 16.1
YBX3P16989 TCF3-216ENST00000592395 996 ntTSL 523.94■■□□□ 1.421e-7■■■□□ 16.1
YBX3P16989 TCF3-211ENST00000587425 629 ntTSL 220.88■□□□□ 0.931e-7■■■□□ 16.1
YBX3P16989 TCF3-217ENST00000592628 1751 ntTSL 518.48■□□□□ 0.551e-7■■■□□ 16.1
YBX3P16989 TNPO2-209ENST00000588151 546 ntTSL 318.45■□□□□ 0.543e-6■■■□□ 16.1
YBX3P16989 TCF3-218ENST00000593064 2694 ntTSL 216.02■□□□□ 0.161e-7■■■□□ 16.1
YBX3P16989 CWC15-203ENST00000542165 921 ntTSL 1 (best)26.94■■□□□ 1.95e-8■■■□□ 16.1
YBX3P16989 CWC15-204ENST00000542907 790 ntTSL 321.9■■□□□ 1.15e-8■■■□□ 16.1
YBX3P16989 CWC15-202ENST00000539856 905 ntTSL 213.1□□□□□ -0.315e-8■■■□□ 16.1
YBX3P16989 CWC15-206ENST00000621358 1113 ntTSL 510.99□□□□□ -0.655e-8■■■□□ 16.1
YBX3P16989 CWC15-201ENST00000279839 1576 ntAPPRIS P1 TSL 1 (best) BASIC10.02□□□□□ -0.815e-8■■■□□ 16.1
YBX3P16989 MAP1B-205ENST00000512974 580 ntTSL 428.15■■■□□ 2.12e-6■■■□□ 16.1
YBX3P16989 WDR46-233ENST00000461951 669 ntTSL 319.48■□□□□ 0.717e-9■■■□□ 16.1
YBX3P16989 WDR46-235ENST00000473611 872 ntTSL 319.48■□□□□ 0.717e-9■■■□□ 16.1
YBX3P16989 WRAP73-208ENST00000479331 446 ntTSL 223.72■■□□□ 1.393e-9■■■□□ 16.1
YBX3P16989 MPI-203ENST00000535694 1523 ntTSL 2 BASIC18.13■□□□□ 0.492e-6■■■□□ 16.1
YBX3P16989 MPI-208ENST00000563786 1707 ntTSL 5 BASIC15.87■□□□□ 0.132e-6■■■□□ 16.1
YBX3P16989 MPI-201ENST00000323744 1619 ntTSL 1 (best) BASIC13.3□□□□□ -0.282e-6■■■□□ 16.1
YBX3P16989 MPI-202ENST00000352410 5828 ntAPPRIS P1 TSL 1 (best) BASIC11.5□□□□□ -0.572e-6■■■□□ 16.1
YBX3P16989 MPI-213ENST00000566377 2809 ntTSL 1 (best) BASIC9.21□□□□□ -0.942e-6■■■□□ 16.1
YBX3P16989 RRM1-209ENST00000531591 639 ntTSL 29.59□□□□□ -0.879e-8■■■□□ 16.1
YBX3P16989 COA4-202ENST00000537289 582 ntAPPRIS P1 TSL 2 BASIC13.83□□□□□ -0.22e-6■■■□□ 16.1
YBX3P16989 COA4-201ENST00000355693 960 ntAPPRIS P1 TSL 1 (best) BASIC12.94□□□□□ -0.342e-6■■■□□ 16.1
YBX3P16989 COA4-204ENST00000541455 1038 ntTSL 5 BASIC12.23□□□□□ -0.452e-6■■■□□ 16.1
YBX3P16989 COA4-206ENST00000545127 922 ntAPPRIS P1 TSL 2 BASIC11.56□□□□□ -0.562e-6■■■□□ 16.1
YBX3P16989 MMGT1-201ENST00000305963 3738 ntAPPRIS P1 TSL 1 (best) BASIC9.61□□□□□ -0.871e-7■■■□□ 16.1
YBX3P16989 CEP192-211ENST00000513432 8635 ntTSL 1 (best)7.05□□□□□ -1.286e-7■■■□□ 16.1
YBX3P16989 CEP192-203ENST00000506447 7960 ntAPPRIS P2 TSL 5 BASIC5.07□□□□□ -1.66e-7■■■□□ 16.1
YBX3P16989 CEP192-201ENST00000325971 7764 ntTSL 5 BASIC4.86□□□□□ -1.636e-7■■■□□ 16.1
YBX3P16989 GRAMD4-202ENST00000406902 4484 ntAPPRIS P1 TSL 1 (best) BASIC13.8□□□□□ -0.24e-6■■■□□ 16.1
YBX3P16989 GRAMD4-201ENST00000361034 4315 ntAPPRIS P1 TSL 1 (best) BASIC13.16□□□□□ -0.34e-6■■■□□ 16.1
YBX3P16989 POLR2E-210ENST00000592597 440 ntTSL 222.26■■□□□ 1.157e-16■■■□□ 16.1
YBX3P16989 FAH-213ENST00000561421 1549 ntAPPRIS P1 TSL 1 (best) BASIC29.72■■■□□ 2.352e-10■■■□□ 16.1
YBX3P16989 FAH-203ENST00000537726 1396 ntTSL 225.5■■□□□ 1.672e-10■■■□□ 16.1
YBX3P16989 FAH-202ENST00000407106 2152 ntAPPRIS P1 TSL 5 BASIC24.5■■□□□ 1.512e-10■■■□□ 16.1
YBX3P16989 FAH-208ENST00000558767 2087 ntTSL 223.75■■□□□ 1.392e-10■■■□□ 16.1
YBX3P16989 FAH-212ENST00000561369 746 ntTSL 323.62■■□□□ 1.372e-10■■■□□ 16.1
YBX3P16989 FAH-201ENST00000261755 1471 ntAPPRIS P1 TSL 5 BASIC20.94■□□□□ 0.942e-10■■■□□ 16.1
YBX3P16989 FAH-205ENST00000558022 568 ntTSL 420.18■□□□□ 0.822e-10■■■□□ 16.1
YBX3P16989 EIF4G1-224ENST00000444861 2384 ntTSL 1 (best)22.58■■□□□ 1.214e-9■■■□□ 16.1
YBX3P16989 CFD-202ENST00000592860 809 ntAPPRIS ALT2 TSL 1 (best) BASIC31.21■■■□□ 2.593e-9■■■□□ 16.1
YBX3P16989 CFD-201ENST00000327726 1201 ntAPPRIS P3 TSL 1 (best) BASIC28.03■■■□□ 2.083e-9■■■□□ 16.1
YBX3P16989 TICRR-202ENST00000560985 6656 ntAPPRIS ALT2 TSL 1 (best) BASIC14.09□□□□□ -0.152e-6■■■□□ 16.1
YBX3P16989 TICRR-201ENST00000268138 6775 ntAPPRIS P3 TSL 5 BASIC14.06□□□□□ -0.162e-6■■■□□ 16.1
YBX3P16989 WDR5-201ENST00000358625 3151 ntAPPRIS P1 TSL 1 (best) BASIC16.16■□□□□ 0.181e-6■■■□□ 16.1
YBX3P16989 SKI-201ENST00000378536 5613 ntAPPRIS P1 TSL 1 (best) BASIC21.87■■□□□ 1.095e-7■■■□□ 16.1
YBX3P16989 MRPL10-202ENST00000351111 1725 ntAPPRIS P1 TSL 1 (best) BASIC27.7■■■□□ 2.025e-10■■■□□ 16.1
YBX3P16989 MRPL10-204ENST00000421763 1576 ntTSL 227.62■■■□□ 2.015e-10■■■□□ 16.1
YBX3P16989 MRPL10-203ENST00000414011 1622 ntTSL 3 BASIC22.91■■□□□ 1.265e-10■■■□□ 16.1
YBX3P16989 MRPL10-201ENST00000290208 2013 ntTSL 2 BASIC13.36□□□□□ -0.275e-10■■■□□ 16.1
YBX3P16989 SLC1A5-203ENST00000542575 2882 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.961e-8■■■□□ 16.1
YBX3P16989 AKT1-213ENST00000555458 705 ntTSL 219.62■□□□□ 0.732e-12■■■□□ 16.1
YBX3P16989 AKT1-219ENST00000610370 3187 ntTSL 214.13□□□□□ -0.152e-12■■■□□ 16.1
YBX3P16989 MIEF1-204ENST00000428069 1379 ntTSL 221.03■□□□□ 0.963e-7■■■□□ 16.1
YBX3P16989 MIEF1-202ENST00000402881 2269 ntTSL 1 (best) BASIC16.68■□□□□ 0.263e-7■■■□□ 16.1
YBX3P16989 MIEF1-205ENST00000433117 3838 ntTSL 1 (best)12.55□□□□□ -0.43e-7■■■□□ 16.1
YBX3P16989 MIEF1-203ENST00000404569 3797 ntAPPRIS P1 TSL 5 BASIC12.08□□□□□ -0.483e-7■■■□□ 16.1
YBX3P16989 EMC4-201ENST00000249209 852 ntTSL 1 (best) BASIC20.68■□□□□ 0.96e-7■■■□□ 16.1
YBX3P16989 EMC4-206ENST00000558205 1006 ntTSL 220.56■□□□□ 0.886e-7■■■□□ 16.1
YBX3P16989 EMC4-202ENST00000267750 1036 ntAPPRIS P1 TSL 1 (best) BASIC12.92□□□□□ -0.346e-7■■■□□ 16.1
YBX3P16989 EMC4-212ENST00000561246 2019 ntTSL 29.77□□□□□ -0.856e-7■■■□□ 16.1
YBX3P16989 EMC4-211ENST00000560947 709 ntTSL 38.73□□□□□ -1.016e-7■■■□□ 16.1
YBX3P16989 PPP2R1A-201ENST00000322088 5380 ntAPPRIS P1 TSL 1 (best) BASIC14.22□□□□□ -0.131e-9■■■□□ 16.1
YBX3P16989 PPP2R1A-205ENST00000462990 2730 ntTSL 2 BASIC12.73□□□□□ -0.371e-9■■■□□ 16.1
YBX3P16989 LAMP1-201ENST00000332556 2699 ntAPPRIS P1 TSL 1 (best) BASIC19.85■□□□□ 0.771e-6■■■□□ 16
YBX3P16989 TMEM106C-202ENST00000429772 1515 ntAPPRIS P1 TSL 2 BASIC21.38■■□□□ 1.011e-7■■■□□ 16
YBX3P16989 TMEM106C-203ENST00000449758 1414 ntTSL 2 BASIC20.65■□□□□ 0.91e-7■■■□□ 16
YBX3P16989 TMEM106C-201ENST00000256686 1394 ntTSL 1 (best) BASIC20.64■□□□□ 0.891e-7■■■□□ 16
YBX3P16989 TMEM106C-219ENST00000552546 742 ntTSL 4 BASIC9.77□□□□□ -0.851e-7■■■□□ 16
YBX3P16989 TMEM106C-208ENST00000548355 583 ntTSL 38.91□□□□□ -0.981e-7■■■□□ 16
YBX3P16989 TMEM106C-221ENST00000553217 660 ntTSL 36.83□□□□□ -1.321e-7■■■□□ 16
YBX3P16989 WNK2-206ENST00000448039 2385 ntAPPRIS ALT2 TSL 1 (best)23.06■■□□□ 1.283e-6■■■□□ 16
YBX3P16989 WNK2-204ENST00000427277 6108 ntTSL 5 BASIC19.46■□□□□ 0.713e-6■■■□□ 16
YBX3P16989 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC18.63■□□□□ 0.573e-6■■■□□ 16
YBX3P16989 WNK2-201ENST00000297954 7138 ntAPPRIS P2 TSL 1 (best) BASIC17.13■□□□□ 0.333e-6■■■□□ 16
YBX3P16989 WNK2-205ENST00000432730 7792 ntAPPRIS ALT2 TSL 1 (best)16.22■□□□□ 0.193e-6■■■□□ 16
Retrieved 100 of 29,075 protein–RNA pairs in 477.7 ms