Protein–RNA interactions for Protein: O94913

PCF11, Pre-mRNA cleavage complex 2 protein Pcf11, humanhuman

Known RBP Predictions only

Length 1,555 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCF11O94913 UNC119-201ENST00000301032 1653 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
PCF11O94913 FADS6-203ENST00000612771 2154 ntAPPRIS P2 TSL 1 (best) BASIC31.71■■■□□ 2.67
PCF11O94913 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC31.71■■■□□ 2.67
PCF11O94913 FOXN3-AS1-201ENST00000555562 1077 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
PCF11O94913 SMAGP-204ENST00000603838 816 ntTSL 2 BASIC31.71■■■□□ 2.67
PCF11O94913 FBXL12-205ENST00000586651 1736 ntTSL 1 (best) BASIC31.71■■■□□ 2.67
PCF11O94913 SYTL1-211ENST00000618673 1712 ntTSL 5 BASIC31.71■■■□□ 2.67
PCF11O94913 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
PCF11O94913 CASP6-201ENST00000265164 1548 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.67
PCF11O94913 USF2-203ENST00000379134 648 ntTSL 1 (best) BASIC31.7■■■□□ 2.67
PCF11O94913 YBEY-205ENST00000397694 534 ntTSL 1 (best) BASIC31.7■■■□□ 2.67
PCF11O94913 DMRT2-206ENST00000412350 1244 ntTSL 1 (best) BASIC31.7■■■□□ 2.67
PCF11O94913 AC091564.2-201ENST00000527191 399 ntTSL 3 BASIC31.7■■■□□ 2.67
PCF11O94913 CBLN1-202ENST00000536749 718 ntAPPRIS P1 TSL 5 BASIC31.7■■■□□ 2.67
PCF11O94913 HLX-AS1-201ENST00000552026 563 ntTSL 4 BASIC31.7■■■□□ 2.67
PCF11O94913 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.66
PCF11O94913 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC31.7■■■□□ 2.66
PCF11O94913 TREX2-204ENST00000370212 861 ntTSL 5 BASIC31.69■■■□□ 2.66
PCF11O94913 TREX2-205ENST00000370231 1255 ntAPPRIS P1 TSL 5 BASIC31.69■■■□□ 2.66
PCF11O94913 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC31.69■■■□□ 2.66
PCF11O94913 NOXO1-205ENST00000566005 1144 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
PCF11O94913 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC31.69■■■□□ 2.66
PCF11O94913 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC31.69■■■□□ 2.66
PCF11O94913 CACNB3-205ENST00000547392 2237 ntTSL 5 BASIC31.69■■■□□ 2.66
PCF11O94913 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
PCF11O94913 CAMK2B-207ENST00000358707 1895 ntTSL 1 (best) BASIC31.69■■■□□ 2.66
PCF11O94913 FAM66B-201ENST00000529456 1432 ntTSL 2 BASIC31.69■■■□□ 2.66
PCF11O94913 NEIL1-206ENST00000564784 2019 ntAPPRIS P1 TSL 2 BASIC31.69■■■□□ 2.66
PCF11O94913 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC31.69■■■□□ 2.66
PCF11O94913 GGPS1-206ENST00000488594 1396 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
PCF11O94913 C1QBP-201ENST00000225698 1169 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
PCF11O94913 HAUS1-201ENST00000282058 1125 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
PCF11O94913 ADAMTS19-AS1-201ENST00000502827 786 ntTSL 4 BASIC31.68■■■□□ 2.66
PCF11O94913 SLC39A13-212ENST00000531974 856 ntTSL 2 BASIC31.68■■■□□ 2.66
PCF11O94913 KAZN-209ENST00000636564 1197 ntTSL 5 BASIC31.68■■■□□ 2.66
PCF11O94913 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC31.68■■■□□ 2.66
PCF11O94913 NPAS1-201ENST00000439365 1341 ntTSL 2 BASIC31.68■■■□□ 2.66
PCF11O94913 ATP6V0B-213ENST00000532642 1685 ntTSL 2 BASIC31.68■■■□□ 2.66
PCF11O94913 NUDT16L1-202ENST00000405142 2040 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
PCF11O94913 THOC6-209ENST00000575576 1360 ntTSL 5 BASIC31.68■■■□□ 2.66
PCF11O94913 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
PCF11O94913 LINC01743-201ENST00000366308 964 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
PCF11O94913 BX322234.1-201ENST00000444188 980 ntTSL 3 BASIC31.68■■■□□ 2.66
PCF11O94913 AC026412.1-201ENST00000507290 1033 ntTSL 1 (best) BASIC31.68■■■□□ 2.66
PCF11O94913 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC31.68■■■□□ 2.66
PCF11O94913 AC007786.1-201ENST00000587859 709 ntTSL 2 BASIC31.68■■■□□ 2.66
PCF11O94913 TSEN15-203ENST00000423085 1743 ntTSL 2 BASIC31.68■■■□□ 2.66
PCF11O94913 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC31.68■■■□□ 2.66
PCF11O94913 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
PCF11O94913 MEF2B-204ENST00000424583 1405 ntAPPRIS P1 TSL 5 BASIC31.67■■■□□ 2.66
PCF11O94913 H19-201ENST00000411754 1788 ntTSL 5 BASIC31.67■■■□□ 2.66
PCF11O94913 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC31.67■■■□□ 2.66
PCF11O94913 ZNF561-AS1-201ENST00000585797 1593 ntTSL 2 BASIC31.67■■■□□ 2.66
PCF11O94913 FICD-201ENST00000361549 1816 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
PCF11O94913 BCL7B-206ENST00000455335 985 ntTSL 3 BASIC31.67■■■□□ 2.66
PCF11O94913 TRAPPC6A-201ENST00000006275 805 ntTSL 1 (best) BASIC31.67■■■□□ 2.66
PCF11O94913 CABP2-204ENST00000636477 941 ntTSL 5 BASIC31.67■■■□□ 2.66
PCF11O94913 KCNK15-201ENST00000372861 2599 ntAPPRIS P1 TSL 1 (best) BASIC31.67■■■□□ 2.66
PCF11O94913 AC121338.2-201ENST00000622535 1744 ntBASIC31.66■■■□□ 2.66
PCF11O94913 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC31.66■■■□□ 2.66
PCF11O94913 CCM2L-201ENST00000262659 2523 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
PCF11O94913 ARX-201ENST00000379044 2876 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
PCF11O94913 FKBP2-202ENST00000394540 1002 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
PCF11O94913 IAH1-215ENST00000497473 1266 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
PCF11O94913 CRTC2-203ENST00000368633 2644 ntAPPRIS P1 TSL 1 (best) BASIC31.66■■■□□ 2.66
PCF11O94913 P4HA3-202ENST00000427714 2248 ntTSL 2 BASIC31.66■■■□□ 2.66
PCF11O94913 JUNB-201ENST00000302754 1820 ntAPPRIS P1 BASIC31.66■■■□□ 2.66
PCF11O94913 KRT18-202ENST00000388837 1420 ntAPPRIS P1 TSL 5 BASIC31.66■■■□□ 2.66
PCF11O94913 CAPN10-208ENST00000404753 2570 ntAPPRIS ALT2 TSL 5 BASIC31.66■■■□□ 2.66
PCF11O94913 C20orf27-201ENST00000217195 1302 ntTSL 2 BASIC31.66■■■□□ 2.66
PCF11O94913 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC31.65■■■□□ 2.66
PCF11O94913 HAS3-201ENST00000219322 1163 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
PCF11O94913 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
PCF11O94913 MCEMP1-201ENST00000333598 1730 ntAPPRIS P2 TSL 1 (best) BASIC31.65■■■□□ 2.66
PCF11O94913 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC31.65■■■□□ 2.66
PCF11O94913 ANKRD54-204ENST00000411961 946 ntTSL 5 BASIC31.65■■■□□ 2.66
PCF11O94913 LIME1-205ENST00000480139 819 ntAPPRIS ALT2 TSL 3 BASIC31.65■■■□□ 2.66
PCF11O94913 LINC02256-201ENST00000561999 366 ntTSL 3 BASIC31.65■■■□□ 2.66
PCF11O94913 IRX4-201ENST00000231357 2221 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
PCF11O94913 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC31.65■■■□□ 2.66
PCF11O94913 LCK-214ENST00000619559 2099 ntAPPRIS P1 TSL 1 (best) BASIC31.65■■■□□ 2.66
PCF11O94913 PLK5-205ENST00000642079 1969 ntBASIC31.65■■■□□ 2.66
PCF11O94913 HCK-203ENST00000375862 1806 ntAPPRIS ALT2 TSL 1 (best) BASIC31.65■■■□□ 2.66
PCF11O94913 YY1AP1-214ENST00000407221 2705 ntAPPRIS ALT2 TSL 2 BASIC31.65■■■□□ 2.66
PCF11O94913 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC31.65■■■□□ 2.66
PCF11O94913 DBNDD2-203ENST00000372710 1417 ntTSL 1 (best) BASIC31.65■■■□□ 2.66
PCF11O94913 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC31.64■■■□□ 2.66
PCF11O94913 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC31.64■■■□□ 2.66
PCF11O94913 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC31.64■■■□□ 2.66
PCF11O94913 MIEF2-207ENST00000578621 540 ntTSL 4 BASIC31.64■■■□□ 2.66
PCF11O94913 AL031963.3-201ENST00000606441 850 ntBASIC31.64■■■□□ 2.66
PCF11O94913 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC31.64■■■□□ 2.66
PCF11O94913 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC31.64■■■□□ 2.66
PCF11O94913 DPF1-209ENST00000456296 1562 ntAPPRIS P1 TSL 5 BASIC31.64■■■□□ 2.66
PCF11O94913 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC31.64■■■□□ 2.66
PCF11O94913 MLLT10-205ENST00000377100 1136 ntTSL 2 BASIC31.64■■■□□ 2.65
PCF11O94913 AC027682.2-201ENST00000563083 336 ntTSL 5 BASIC31.64■■■□□ 2.65
PCF11O94913 AC012306.2-201ENST00000609350 630 ntBASIC31.64■■■□□ 2.65
PCF11O94913 AGAP3-201ENST00000335367 2675 ntTSL 1 (best) BASIC31.64■■■□□ 2.65
PCF11O94913 CATSPER2-201ENST00000321596 1820 ntAPPRIS P3 TSL 5 BASIC31.63■■■□□ 2.65
Retrieved 100 of 98,524 protein–RNA pairs in 19.9 ms