Protein–RNA interactions for Protein: A0A0B4J248

TRAV1-1, T-cell receptor alpha variable 1-1 (Fragment), humanhuman

Predictions only

Length 108 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRAV1-1A0A0B4J248 FOXP4-202ENST00000373057 3300 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
TRAV1-1A0A0B4J248 GLRX3-201ENST00000331244 1302 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
TRAV1-1A0A0B4J248 OSCAR-206ENST00000391760 629 ntTSL 2 BASIC15.77■□□□□ 0.12
TRAV1-1A0A0B4J248 NKIRAS2-209ENST00000479407 992 ntTSL 3 BASIC15.77■□□□□ 0.12
TRAV1-1A0A0B4J248 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC15.77■□□□□ 0.12
TRAV1-1A0A0B4J248 NPLOC4-201ENST00000331134 4415 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.12
TRAV1-1A0A0B4J248 NGLY1-207ENST00000428257 2534 ntTSL 1 (best) BASIC15.77■□□□□ 0.12
TRAV1-1A0A0B4J248 RAB4A-205ENST00000618010 2799 ntTSL 3 BASIC15.77■□□□□ 0.11
TRAV1-1A0A0B4J248 AC107464.1-203ENST00000468356 2120 ntTSL 1 (best) BASIC15.77■□□□□ 0.11
TRAV1-1A0A0B4J248 PDCD10-201ENST00000392750 2067 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
TRAV1-1A0A0B4J248 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
TRAV1-1A0A0B4J248 ZNF419-201ENST00000221735 2309 ntAPPRIS ALT2 TSL 1 (best) BASIC15.77■□□□□ 0.11
TRAV1-1A0A0B4J248 EEF1A2-201ENST00000217182 2006 ntAPPRIS P1 TSL 1 (best) BASIC15.77■□□□□ 0.11
TRAV1-1A0A0B4J248 SLC6A9-201ENST00000357730 2168 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TRAV1-1A0A0B4J248 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC15.76■□□□□ 0.11
TRAV1-1A0A0B4J248 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TRAV1-1A0A0B4J248 AKNA-205ENST00000374079 2138 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TRAV1-1A0A0B4J248 PDE6B-202ENST00000429163 2120 ntTSL 2 BASIC15.76■□□□□ 0.11
TRAV1-1A0A0B4J248 ZNF419-203ENST00000354197 1569 ntTSL 5 BASIC15.76■□□□□ 0.11
TRAV1-1A0A0B4J248 SEC14L2-215ENST00000617837 2632 ntTSL 2 BASIC15.76■□□□□ 0.11
TRAV1-1A0A0B4J248 ADAMTS9-202ENST00000459780 2871 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TRAV1-1A0A0B4J248 PPP2R2B-203ENST00000394411 2071 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
TRAV1-1A0A0B4J248 MMD2-201ENST00000401401 2335 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRAV1-1A0A0B4J248 EBPL-205ENST00000378284 967 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TRAV1-1A0A0B4J248 AC061979.1-201ENST00000532061 434 ntTSL 5 BASIC15.76■□□□□ 0.11
TRAV1-1A0A0B4J248 LINC01925-201ENST00000579492 500 ntTSL 5 BASIC15.76■□□□□ 0.11
TRAV1-1A0A0B4J248 NTF6A-201ENST00000591175 560 ntBASIC15.76■□□□□ 0.11
TRAV1-1A0A0B4J248 AC099791.2-201ENST00000605725 427 ntBASIC15.76■□□□□ 0.11
TRAV1-1A0A0B4J248 RIIAD1-201ENST00000326413 1772 ntTSL 2 BASIC15.76■□□□□ 0.11
TRAV1-1A0A0B4J248 ST7L-221ENST00000490067 1780 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TRAV1-1A0A0B4J248 LUC7L2-210ENST00000619796 2783 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TRAV1-1A0A0B4J248 DYNC1LI2-201ENST00000258198 4515 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRAV1-1A0A0B4J248 LRRC20-205ENST00000395010 2959 ntTSL 3 BASIC15.76■□□□□ 0.11
TRAV1-1A0A0B4J248 TAF6-211ENST00000453269 2464 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRAV1-1A0A0B4J248 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRAV1-1A0A0B4J248 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC15.76■□□□□ 0.11
TRAV1-1A0A0B4J248 FIP1L1-202ENST00000337488 2198 ntTSL 1 (best) BASIC15.76■□□□□ 0.11
TRAV1-1A0A0B4J248 CHST2-201ENST00000309575 4582 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRAV1-1A0A0B4J248 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRAV1-1A0A0B4J248 VDAC1-203ENST00000395047 1873 ntAPPRIS P1 TSL 1 (best) BASIC15.76■□□□□ 0.11
TRAV1-1A0A0B4J248 TFCP2-204ENST00000548115 1862 ntTSL 5 BASIC15.76■□□□□ 0.11
TRAV1-1A0A0B4J248 ADPGK-201ENST00000311669 2557 ntAPPRIS P1 TSL 2 BASIC15.76■□□□□ 0.11
TRAV1-1A0A0B4J248 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRAV1-1A0A0B4J248 SOCS3-201ENST00000330871 2734 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRAV1-1A0A0B4J248 FAM57A-201ENST00000301324 2013 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
TRAV1-1A0A0B4J248 LAG3-202ENST00000441671 1576 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRAV1-1A0A0B4J248 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
TRAV1-1A0A0B4J248 ADRM1-204ENST00000491935 1530 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
TRAV1-1A0A0B4J248 CHPF-201ENST00000243776 3013 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRAV1-1A0A0B4J248 MZF1-206ENST00000599369 2587 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRAV1-1A0A0B4J248 GPR3-201ENST00000374024 2115 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRAV1-1A0A0B4J248 AC007383.2-202ENST00000435627 482 ntTSL 2 BASIC15.75■□□□□ 0.11
TRAV1-1A0A0B4J248 ZNF487-202ENST00000437590 2111 ntTSL 2 BASIC15.75■□□□□ 0.11
TRAV1-1A0A0B4J248 ALDOA-212ENST00000564546 2104 ntAPPRIS P2 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRAV1-1A0A0B4J248 AC010997.5-201ENST00000609182 354 ntBASIC15.75■□□□□ 0.11
TRAV1-1A0A0B4J248 CCDC194-202ENST00000636079 705 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
TRAV1-1A0A0B4J248 AP004607.4-201ENST00000530158 1459 ntBASIC15.75■□□□□ 0.11
TRAV1-1A0A0B4J248 P3H1-204ENST00000397054 2705 ntAPPRIS ALT2 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRAV1-1A0A0B4J248 ZNF385A-202ENST00000352268 2076 ntTSL 2 BASIC15.75■□□□□ 0.11
TRAV1-1A0A0B4J248 MYEOV-201ENST00000308946 2287 ntAPPRIS P3 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRAV1-1A0A0B4J248 LZTS2-202ENST00000370223 2883 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRAV1-1A0A0B4J248 CYHR1-201ENST00000306145 1409 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
TRAV1-1A0A0B4J248 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRAV1-1A0A0B4J248 FAM213A-206ENST00000615554 2213 ntAPPRIS P1 TSL 5 BASIC15.75■□□□□ 0.11
TRAV1-1A0A0B4J248 AHCYL1-202ENST00000369799 4015 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRAV1-1A0A0B4J248 BANP-223ENST00000538234 2372 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRAV1-1A0A0B4J248 TFEB-203ENST00000358871 2188 ntTSL 1 (best) BASIC15.75■□□□□ 0.11
TRAV1-1A0A0B4J248 C3orf70-201ENST00000335012 5901 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRAV1-1A0A0B4J248 MPZ-206ENST00000533357 1955 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRAV1-1A0A0B4J248 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRAV1-1A0A0B4J248 PSMD8-201ENST00000215071 1553 ntAPPRIS P1 TSL 1 (best) BASIC15.75■□□□□ 0.11
TRAV1-1A0A0B4J248 DNM1-206ENST00000475805 2710 ntAPPRIS ALT1 TSL 2 BASIC15.74■□□□□ 0.11
TRAV1-1A0A0B4J248 AL390961.4-201ENST00000623958 2535 ntBASIC15.74■□□□□ 0.11
TRAV1-1A0A0B4J248 SNX11-201ENST00000359238 2315 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TRAV1-1A0A0B4J248 CPEB2-207ENST00000507071 2103 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
TRAV1-1A0A0B4J248 CELF6-202ENST00000395258 1741 ntTSL 5 BASIC15.74■□□□□ 0.11
TRAV1-1A0A0B4J248 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC15.74■□□□□ 0.11
TRAV1-1A0A0B4J248 SYF2-201ENST00000236273 1345 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TRAV1-1A0A0B4J248 COX20-203ENST00000411948 2631 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TRAV1-1A0A0B4J248 CD55-201ENST00000314754 2220 ntAPPRIS ALT2 TSL 1 (best) BASIC15.74■□□□□ 0.11
TRAV1-1A0A0B4J248 PGLYRP2-202ENST00000340880 2230 ntAPPRIS P2 TSL 1 (best) BASIC15.74■□□□□ 0.11
TRAV1-1A0A0B4J248 AC135050.7-201ENST00000624508 2218 ntBASIC15.74■□□□□ 0.11
TRAV1-1A0A0B4J248 DHRSX-201ENST00000334651 2571 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TRAV1-1A0A0B4J248 RALGPS1-208ENST00000424082 2362 ntTSL 2 BASIC15.74■□□□□ 0.11
TRAV1-1A0A0B4J248 DNAJC27-AS1-204ENST00000428614 780 ntTSL 3 BASIC15.74■□□□□ 0.11
TRAV1-1A0A0B4J248 AC005332.8-201ENST00000622750 2735 ntBASIC15.74■□□□□ 0.11
TRAV1-1A0A0B4J248 AP1AR-202ENST00000309703 2337 ntAPPRIS ALT1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TRAV1-1A0A0B4J248 SEPT9-246ENST00000592951 1793 ntAPPRIS ALT2 TSL 2 BASIC15.74■□□□□ 0.11
TRAV1-1A0A0B4J248 TP73-202ENST00000354437 2140 ntTSL 5 BASIC15.74■□□□□ 0.11
TRAV1-1A0A0B4J248 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TRAV1-1A0A0B4J248 CMIP-209ENST00000566513 2288 ntTSL 5 BASIC15.74■□□□□ 0.11
TRAV1-1A0A0B4J248 FAM57B-204ENST00000564806 1710 ntTSL 2 BASIC15.74■□□□□ 0.11
TRAV1-1A0A0B4J248 ECHDC1-203ENST00000368291 1354 ntTSL 2 BASIC15.74■□□□□ 0.11
TRAV1-1A0A0B4J248 ACSF2-201ENST00000300441 2235 ntAPPRIS P1 TSL 1 (best) BASIC15.74■□□□□ 0.11
TRAV1-1A0A0B4J248 TRMT6-202ENST00000453074 2239 ntTSL 2 BASIC15.74■□□□□ 0.11
TRAV1-1A0A0B4J248 ZSWIM8-220ENST00000604524 5465 ntTSL 5 BASIC15.74■□□□□ 0.11
TRAV1-1A0A0B4J248 SPTBN4-207ENST00000595535 6105 ntTSL 5 BASIC15.74■□□□□ 0.11
TRAV1-1A0A0B4J248 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC15.73■□□□□ 0.11
TRAV1-1A0A0B4J248 FAM110A-204ENST00000381941 1809 ntAPPRIS P1 TSL 1 (best) BASIC15.73■□□□□ 0.11
TRAV1-1A0A0B4J248 TINAGL1-211ENST00000537531 1841 ntAPPRIS ALT2 TSL 5 BASIC15.73■□□□□ 0.11
Retrieved 100 of 98,524 protein–RNA pairs in 10.7 ms