Protein–RNA interactions for Protein: Q9UJV9

DDX41, Probable ATP-dependent RNA helicase DDX41, humanhuman

Known RBP Predictions only

Length 622 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41Q9UJV9 ZNF264-205ENST00000599653 705 ntTSL 2 BASIC23.2■■□□□ 1.3
DDX41Q9UJV9 AC105020.6-201ENST00000621523 1217 ntBASIC23.2■■□□□ 1.3
DDX41Q9UJV9 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC23.2■■□□□ 1.3
DDX41Q9UJV9 FGF13-208ENST00000626909 1039 ntTSL 2 BASIC23.2■■□□□ 1.3
DDX41Q9UJV9 MARK2-202ENST00000361128 3004 ntAPPRIS ALT2 TSL 1 (best) BASIC23.2■■□□□ 1.3
DDX41Q9UJV9 SMIM3-201ENST00000526627 2332 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
DDX41Q9UJV9 SHKBP1-225ENST00000600733 2284 ntTSL 5 BASIC23.2■■□□□ 1.3
DDX41Q9UJV9 FBXL14-201ENST00000339235 2111 ntAPPRIS P1 TSL 1 (best) BASIC23.2■■□□□ 1.3
DDX41Q9UJV9 LYPD1-202ENST00000397463 1891 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
DDX41Q9UJV9 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
DDX41Q9UJV9 ARL6IP4-220ENST00000543566 1591 ntAPPRIS ALT2 TSL 1 (best) BASIC23.19■■□□□ 1.3
DDX41Q9UJV9 TDRP-202ENST00000427263 2465 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
DDX41Q9UJV9 ALDOA-221ENST00000566897 2448 ntAPPRIS P2 TSL 2 BASIC23.19■■□□□ 1.3
DDX41Q9UJV9 PFKFB3-219ENST00000640683 2311 ntTSL 5 BASIC23.19■■□□□ 1.3
DDX41Q9UJV9 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC23.19■■□□□ 1.3
DDX41Q9UJV9 GRK4-203ENST00000398052 2202 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
DDX41Q9UJV9 PMAIP1-201ENST00000269518 1262 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
DDX41Q9UJV9 RAC1-202ENST00000356142 907 ntTSL 1 (best) BASIC23.19■■□□□ 1.3
DDX41Q9UJV9 CD99-203ENST00000381184 918 ntAPPRIS ALT2 TSL 5 BASIC23.19■■□□□ 1.3
DDX41Q9UJV9 AC096537.1-201ENST00000437416 684 ntTSL 5 BASIC23.19■■□□□ 1.3
DDX41Q9UJV9 DIO3-201ENST00000510508 2102 ntAPPRIS P1 BASIC23.19■■□□□ 1.3
DDX41Q9UJV9 AC093827.2-201ENST00000512654 315 ntBASIC23.19■■□□□ 1.3
DDX41Q9UJV9 MMD2-204ENST00000612910 778 ntTSL 5 BASIC23.19■■□□□ 1.3
DDX41Q9UJV9 PTCD3-220ENST00000627371 210 ntTSL 5 BASIC23.19■■□□□ 1.3
DDX41Q9UJV9 GNG4-203ENST00000391854 5104 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
DDX41Q9UJV9 GAS2-202ENST00000454584 2286 ntAPPRIS P1 TSL 1 (best) BASIC23.19■■□□□ 1.3
DDX41Q9UJV9 PPP3CC-203ENST00000397775 2094 ntTSL 2 BASIC23.18■■□□□ 1.3
DDX41Q9UJV9 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC23.18■■□□□ 1.3
DDX41Q9UJV9 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
DDX41Q9UJV9 RTBDN-203ENST00000458671 1066 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
DDX41Q9UJV9 SPI1-204ENST00000533968 1290 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
DDX41Q9UJV9 PNMA6B-201ENST00000538162 1200 ntBASIC23.18■■□□□ 1.3
DDX41Q9UJV9 LINC00304-202ENST00000562248 1095 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
DDX41Q9UJV9 AC022167.3-201ENST00000564485 427 ntTSL 2 BASIC23.18■■□□□ 1.3
DDX41Q9UJV9 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC23.18■■□□□ 1.3
DDX41Q9UJV9 AC073648.6-201ENST00000641589 218 ntBASIC23.18■■□□□ 1.3
DDX41Q9UJV9 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC23.18■■□□□ 1.3
DDX41Q9UJV9 TMEM129-206ENST00000536901 2172 ntAPPRIS P1 TSL 5 BASIC23.18■■□□□ 1.3
DDX41Q9UJV9 S1PR5-204ENST00000617721 1698 ntTSL 5 BASIC23.18■■□□□ 1.3
DDX41Q9UJV9 NIPAL4-202ENST00000435489 1600 ntAPPRIS ALT2 TSL 2 BASIC23.18■■□□□ 1.3
DDX41Q9UJV9 MAF-202ENST00000393350 6384 ntAPPRIS ALT2 BASIC23.18■■□□□ 1.3
DDX41Q9UJV9 KRT18P55-201ENST00000577198 1950 ntTSL 1 (best) BASIC23.18■■□□□ 1.3
DDX41Q9UJV9 PTGER2-201ENST00000245457 2383 ntAPPRIS P1 TSL 1 (best) BASIC23.18■■□□□ 1.3
DDX41Q9UJV9 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC23.17■■□□□ 1.3
DDX41Q9UJV9 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC23.17■■□□□ 1.3
DDX41Q9UJV9 HDAC2-201ENST00000368632 2084 ntTSL 2 BASIC23.17■■□□□ 1.3
DDX41Q9UJV9 EXOC3-AS1-202ENST00000623673 1663 ntBASIC23.17■■□□□ 1.3
DDX41Q9UJV9 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
DDX41Q9UJV9 MFF-205ENST00000354503 1085 ntTSL 2 BASIC23.17■■□□□ 1.3
DDX41Q9UJV9 ZPBP-203ENST00000419417 1095 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
DDX41Q9UJV9 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
DDX41Q9UJV9 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC23.17■■□□□ 1.3
DDX41Q9UJV9 AC073896.1-201ENST00000549318 937 ntAPPRIS P1 TSL 5 BASIC23.17■■□□□ 1.3
DDX41Q9UJV9 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC23.17■■□□□ 1.3
DDX41Q9UJV9 ACADVL-202ENST00000350303 2191 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
DDX41Q9UJV9 NTN4-207ENST00000553059 1818 ntTSL 1 (best) BASIC23.17■■□□□ 1.3
DDX41Q9UJV9 RFLNA-201ENST00000324038 2148 ntAPPRIS P2 TSL 2 BASIC23.17■■□□□ 1.3
DDX41Q9UJV9 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC23.16■■□□□ 1.3
DDX41Q9UJV9 ARSB-201ENST00000264914 5327 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
DDX41Q9UJV9 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC23.16■■□□□ 1.3
DDX41Q9UJV9 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC23.16■■□□□ 1.3
DDX41Q9UJV9 KDM3B-201ENST00000314358 6813 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
DDX41Q9UJV9 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
DDX41Q9UJV9 TMEM132A-202ENST00000453848 3346 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
DDX41Q9UJV9 SLC35A3-208ENST00000638336 2438 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
DDX41Q9UJV9 CEACAM3-201ENST00000344550 1022 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
DDX41Q9UJV9 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC23.16■■□□□ 1.3
DDX41Q9UJV9 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC23.16■■□□□ 1.3
DDX41Q9UJV9 HES2-205ENST00000487437 968 ntTSL 3 BASIC23.16■■□□□ 1.3
DDX41Q9UJV9 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC23.16■■□□□ 1.3
DDX41Q9UJV9 AC100835.1-201ENST00000565737 498 ntTSL 5 BASIC23.16■■□□□ 1.3
DDX41Q9UJV9 TRIM58-201ENST00000366481 3225 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
DDX41Q9UJV9 MATN4-204ENST00000372756 2077 ntAPPRIS P2 TSL 1 (best) BASIC23.16■■□□□ 1.3
DDX41Q9UJV9 ZNF800-208ENST00000619291 2099 ntTSL 5 BASIC23.16■■□□□ 1.3
DDX41Q9UJV9 TUB-203ENST00000534099 1759 ntTSL 2 BASIC23.16■■□□□ 1.3
DDX41Q9UJV9 PXK-211ENST00000484288 2031 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
DDX41Q9UJV9 SNX7-201ENST00000306121 1734 ntAPPRIS P1 TSL 1 (best) BASIC23.16■■□□□ 1.3
DDX41Q9UJV9 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC23.16■■□□□ 1.3
DDX41Q9UJV9 KIRREL2-201ENST00000262625 1969 ntAPPRIS ALT2 TSL 1 (best) BASIC23.16■■□□□ 1.3
DDX41Q9UJV9 AC091729.3-201ENST00000423008 1401 ntTSL 2 BASIC23.16■■□□□ 1.3
DDX41Q9UJV9 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC23.16■■□□□ 1.3
DDX41Q9UJV9 PKMYT1-201ENST00000262300 2171 ntTSL 1 (best) BASIC23.16■■□□□ 1.3
DDX41Q9UJV9 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC23.16■■□□□ 1.3
DDX41Q9UJV9 FAM110D-201ENST00000374268 2858 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
DDX41Q9UJV9 PACSIN3-201ENST00000298838 1843 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
DDX41Q9UJV9 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC23.15■■□□□ 1.3
DDX41Q9UJV9 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
DDX41Q9UJV9 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
DDX41Q9UJV9 PDCD10-202ENST00000461494 934 ntAPPRIS P1 TSL 3 BASIC23.15■■□□□ 1.3
DDX41Q9UJV9 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC23.15■■□□□ 1.3
DDX41Q9UJV9 AC142381.4-202ENST00000563973 229 ntBASIC23.15■■□□□ 1.3
DDX41Q9UJV9 AC113189.1-201ENST00000570444 327 ntTSL 3 BASIC23.15■■□□□ 1.3
DDX41Q9UJV9 AC005786.3-201ENST00000589360 565 ntTSL 3 BASIC23.15■■□□□ 1.3
DDX41Q9UJV9 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC23.15■■□□□ 1.3
DDX41Q9UJV9 TTC39C-202ENST00000317571 2442 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
DDX41Q9UJV9 FAM129C-212ENST00000601861 2180 ntAPPRIS ALT2 TSL 2 BASIC23.15■■□□□ 1.3
DDX41Q9UJV9 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC23.15■■□□□ 1.3
DDX41Q9UJV9 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC23.15■■□□□ 1.3
DDX41Q9UJV9 PPP1R13B-201ENST00000202556 4958 ntAPPRIS P1 TSL 1 (best) BASIC23.15■■□□□ 1.3
DDX41Q9UJV9 NR6A1-202ENST00000373584 1890 ntAPPRIS ALT2 TSL 1 (best) BASIC23.15■■□□□ 1.3
Retrieved 100 of 98,524 protein–RNA pairs in 40 ms