Protein–RNA interactions for Protein: Q9NXR1

NDE1, Nuclear distribution protein nudE homolog 1, humanhuman

Predictions only

Length 346 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
NDE1Q9NXR1 FAM69B-201ENST00000371691 2410 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
NDE1Q9NXR1 KCNQ5-203ENST00000355635 6623 ntAPPRIS ALT1 TSL 5 BASIC19.52■□□□□ 0.71
NDE1Q9NXR1 CGRRF1-201ENST00000216420 2057 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
NDE1Q9NXR1 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC19.51■□□□□ 0.71
NDE1Q9NXR1 ACP4-201ENST00000270593 1347 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
NDE1Q9NXR1 SNN-201ENST00000329565 3312 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
NDE1Q9NXR1 SCARB2-219ENST00000639738 1517 ntTSL 5 BASIC19.51■□□□□ 0.71
NDE1Q9NXR1 SLC25A43-201ENST00000217909 2783 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
NDE1Q9NXR1 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
NDE1Q9NXR1 SEPT11-201ENST00000264893 5593 ntAPPRIS P2 TSL 1 (best) BASIC19.51■□□□□ 0.71
NDE1Q9NXR1 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
NDE1Q9NXR1 CCDC115-202ENST00000409127 1247 ntTSL 2 BASIC19.51■□□□□ 0.71
NDE1Q9NXR1 SSPN-204ENST00000535504 419 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
NDE1Q9NXR1 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC19.51■□□□□ 0.71
NDE1Q9NXR1 SNAP47-202ENST00000366759 2362 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
NDE1Q9NXR1 COL9A3-201ENST00000343916 2485 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
NDE1Q9NXR1 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC19.51■□□□□ 0.71
NDE1Q9NXR1 AC120498.9-201ENST00000339021 3867 ntBASIC19.51■□□□□ 0.71
NDE1Q9NXR1 SCARF2-203ENST00000623402 3248 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
NDE1Q9NXR1 EFS-201ENST00000216733 3118 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
NDE1Q9NXR1 PRKAG2-203ENST00000418337 2318 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
NDE1Q9NXR1 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
NDE1Q9NXR1 TMEM179-206ENST00000616017 1645 ntBASIC19.51■□□□□ 0.71
NDE1Q9NXR1 TP53BP2-202ENST00000391878 4741 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
NDE1Q9NXR1 KANK4-204ENST00000371153 4665 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
NDE1Q9NXR1 GAS2L1-208ENST00000616432 2925 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
NDE1Q9NXR1 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
NDE1Q9NXR1 STX17-212ENST00000534052 2424 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
NDE1Q9NXR1 C17orf62-204ENST00000437807 2242 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
NDE1Q9NXR1 HBM-201ENST00000356815 506 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
NDE1Q9NXR1 NAXE-202ENST00000368234 901 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
NDE1Q9NXR1 AKAP8L-201ENST00000397410 2146 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
NDE1Q9NXR1 AC009299.2-201ENST00000482477 511 ntBASIC19.5■□□□□ 0.71
NDE1Q9NXR1 VAMP2-204ENST00000488857 874 ntAPPRIS ALT1 TSL 3 BASIC19.5■□□□□ 0.71
NDE1Q9NXR1 OSTM1-201ENST00000193322 4467 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
NDE1Q9NXR1 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.5■□□□□ 0.71
NDE1Q9NXR1 AC129492.1-201ENST00000399413 1804 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
NDE1Q9NXR1 AMDHD1-201ENST00000266736 2260 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
NDE1Q9NXR1 ELOA3B-201ENST00000611323 1641 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
NDE1Q9NXR1 ELOA3D-201ENST00000620881 1641 ntAPPRIS P1 BASIC19.5■□□□□ 0.71
NDE1Q9NXR1 MFSD10-201ENST00000329687 2173 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
NDE1Q9NXR1 MAN1A1-201ENST00000368468 5014 ntAPPRIS P1 TSL 2 BASIC19.5■□□□□ 0.71
NDE1Q9NXR1 ECHDC2-221ENST00000536120 1446 ntTSL 3 BASIC19.5■□□□□ 0.71
NDE1Q9NXR1 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC19.5■□□□□ 0.71
NDE1Q9NXR1 MED25-201ENST00000312865 2332 ntAPPRIS P1 TSL 1 (best) BASIC19.5■□□□□ 0.71
NDE1Q9NXR1 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC19.5■□□□□ 0.71
NDE1Q9NXR1 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC19.5■□□□□ 0.71
NDE1Q9NXR1 CARMIL2-201ENST00000334583 4687 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
NDE1Q9NXR1 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
NDE1Q9NXR1 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
NDE1Q9NXR1 PHC1-212ENST00000543824 4292 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
NDE1Q9NXR1 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
NDE1Q9NXR1 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
NDE1Q9NXR1 SGO1-209ENST00000442720 2266 ntAPPRIS ALT2 TSL 1 (best) BASIC19.49■□□□□ 0.71
NDE1Q9NXR1 FPGS-202ENST00000373228 1383 ntTSL 5 BASIC19.49■□□□□ 0.71
NDE1Q9NXR1 ENKD1-206ENST00000602644 1353 ntTSL 5 BASIC19.49■□□□□ 0.71
NDE1Q9NXR1 GRM5-201ENST00000305432 4475 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
NDE1Q9NXR1 STOX1-202ENST00000399162 935 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
NDE1Q9NXR1 STOX1-203ENST00000399165 1135 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
NDE1Q9NXR1 FAM66D-201ENST00000434078 918 ntTSL 5 BASIC19.49■□□□□ 0.71
NDE1Q9NXR1 FAM66A-201ENST00000525829 921 ntTSL 2 BASIC19.49■□□□□ 0.71
NDE1Q9NXR1 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
NDE1Q9NXR1 PPP1R14A-204ENST00000591291 433 ntTSL 5 BASIC19.49■□□□□ 0.71
NDE1Q9NXR1 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC19.49■□□□□ 0.71
NDE1Q9NXR1 TESMIN-201ENST00000255087 2579 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
NDE1Q9NXR1 CCDC34-201ENST00000317945 2109 ntAPPRIS P3 TSL 1 (best) BASIC19.49■□□□□ 0.71
NDE1Q9NXR1 DAG1-221ENST00000541308 5676 ntAPPRIS P1 TSL 5 BASIC19.49■□□□□ 0.71
NDE1Q9NXR1 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC19.49■□□□□ 0.71
NDE1Q9NXR1 MIB2-231ENST00000518681 3116 ntTSL 1 (best) BASIC19.49■□□□□ 0.71
NDE1Q9NXR1 PKIG-206ENST00000372892 1338 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
NDE1Q9NXR1 BID-205ENST00000399774 2167 ntAPPRIS P1 TSL 1 (best) BASIC19.49■□□□□ 0.71
NDE1Q9NXR1 LYNX1-204ENST00000614491 4708 ntAPPRIS P1 TSL 2 BASIC19.49■□□□□ 0.71
NDE1Q9NXR1 SEPT8-201ENST00000296873 4394 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
NDE1Q9NXR1 ST3GAL3-204ENST00000335430 1805 ntTSL 5 BASIC19.48■□□□□ 0.71
NDE1Q9NXR1 TMPRSS5-202ENST00000536856 1811 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
NDE1Q9NXR1 TRPM2-202ENST00000300482 5989 ntAPPRIS P3 TSL 1 (best) BASIC19.48■□□□□ 0.71
NDE1Q9NXR1 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
NDE1Q9NXR1 TMEM250-201ENST00000418388 2823 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
NDE1Q9NXR1 AGO4-201ENST00000373210 7116 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
NDE1Q9NXR1 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC19.48■□□□□ 0.71
NDE1Q9NXR1 LTBP1-203ENST00000404816 6333 ntAPPRIS P4 TSL 5 BASIC19.48■□□□□ 0.71
NDE1Q9NXR1 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC19.48■□□□□ 0.71
NDE1Q9NXR1 EPB41L4B-201ENST00000374557 4006 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
NDE1Q9NXR1 LPCAT3-201ENST00000261407 2268 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
NDE1Q9NXR1 AC005082.1-201ENST00000413042 2259 ntBASIC19.48■□□□□ 0.71
NDE1Q9NXR1 MXD3-202ENST00000427908 2269 ntTSL 2 BASIC19.48■□□□□ 0.71
NDE1Q9NXR1 CDH22-201ENST00000372262 3661 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
NDE1Q9NXR1 H19-201ENST00000411754 1788 ntTSL 5 BASIC19.48■□□□□ 0.71
NDE1Q9NXR1 METTL24-201ENST00000338882 1119 ntAPPRIS P1 TSL 5 BASIC19.48■□□□□ 0.71
NDE1Q9NXR1 SNX3-202ENST00000349379 890 ntTSL 2 BASIC19.48■□□□□ 0.71
NDE1Q9NXR1 SF1-220ENST00000626028 704 ntTSL 2 BASIC19.48■□□□□ 0.71
NDE1Q9NXR1 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC19.48■□□□□ 0.71
NDE1Q9NXR1 SEPHS1-206ENST00000545675 2988 ntTSL 1 (best) BASIC19.48■□□□□ 0.71
NDE1Q9NXR1 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC19.48■□□□□ 0.71
NDE1Q9NXR1 SLC3A2-206ENST00000535296 2084 ntTSL 5 BASIC19.48■□□□□ 0.71
NDE1Q9NXR1 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
NDE1Q9NXR1 KDELR1-203ENST00000597017 1594 ntTSL 2 BASIC19.48■□□□□ 0.71
NDE1Q9NXR1 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC19.48■□□□□ 0.71
NDE1Q9NXR1 DNAJC1-202ENST00000376980 2106 ntAPPRIS P1 TSL 1 (best) BASIC19.48■□□□□ 0.71
NDE1Q9NXR1 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.48■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 43.9 ms