Protein–RNA interactions for Protein: Q9HC56

PCDH9, Protocadherin-9, humanhuman

Predictions only

Length 1,237 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH9Q9HC56 VPS53-216ENST00000574029 585 ntTSL 4 BASIC20.88■□□□□ 0.93
PCDH9Q9HC56 IGHV3-30-201ENST00000603660 431 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
PCDH9Q9HC56 MDK-213ENST00000617138 635 ntTSL 2 BASIC20.88■□□□□ 0.93
PCDH9Q9HC56 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PCDH9Q9HC56 UPF1-207ENST00000599848 5311 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
PCDH9Q9HC56 FDXR-204ENST00000442102 1967 ntTSL 2 BASIC20.88■□□□□ 0.93
PCDH9Q9HC56 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC20.88■□□□□ 0.93
PCDH9Q9HC56 ENGASE-205ENST00000579016 2579 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
PCDH9Q9HC56 IQCJ-SCHIP1-204ENST00000485419 2445 ntAPPRIS ALT2 TSL 2 BASIC20.87■□□□□ 0.93
PCDH9Q9HC56 TRAPPC5-204ENST00000596148 5498 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PCDH9Q9HC56 MKRN1-208ENST00000474576 1661 ntTSL 5 BASIC20.87■□□□□ 0.93
PCDH9Q9HC56 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PCDH9Q9HC56 AC007322.3-201ENST00000426526 701 ntBASIC20.87■□□□□ 0.93
PCDH9Q9HC56 CNN2P6-201ENST00000439038 900 ntBASIC20.87■□□□□ 0.93
PCDH9Q9HC56 NAT16-202ENST00000443096 1286 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PCDH9Q9HC56 AC231657.2-201ENST00000624556 255 ntBASIC20.87■□□□□ 0.93
PCDH9Q9HC56 CDCA4-201ENST00000336219 2513 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PCDH9Q9HC56 NRXN1-226ENST00000626899 2543 ntTSL 2 BASIC20.87■□□□□ 0.93
PCDH9Q9HC56 INSM1-201ENST00000310227 2829 ntAPPRIS P1 BASIC20.87■□□□□ 0.93
PCDH9Q9HC56 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PCDH9Q9HC56 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC20.87■□□□□ 0.93
PCDH9Q9HC56 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PCDH9Q9HC56 CRTAC1-203ENST00000370597 2890 ntTSL 1 (best) BASIC20.87■□□□□ 0.93
PCDH9Q9HC56 PAIP1-203ENST00000436644 1734 ntAPPRIS ALT1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PCDH9Q9HC56 ZNF282-204ENST00000610704 3722 ntAPPRIS P1 TSL 1 (best) BASIC20.87■□□□□ 0.93
PCDH9Q9HC56 KRT8P36-201ENST00000489121 1440 ntBASIC20.87■□□□□ 0.93
PCDH9Q9HC56 SUSD1-204ENST00000374270 3124 ntAPPRIS P3 TSL 1 (best) BASIC20.87■□□□□ 0.93
PCDH9Q9HC56 SPOCK3-215ENST00000510741 1963 ntAPPRIS ALT2 TSL 5 BASIC20.86■□□□□ 0.93
PCDH9Q9HC56 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDH9Q9HC56 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDH9Q9HC56 HSD3B7-202ENST00000297679 2172 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDH9Q9HC56 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC20.86■□□□□ 0.93
PCDH9Q9HC56 PLEKHG4-201ENST00000360461 6782 ntAPPRIS P3 TSL 2 BASIC20.86■□□□□ 0.93
PCDH9Q9HC56 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDH9Q9HC56 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
PCDH9Q9HC56 ELAC1-204ENST00000591429 975 ntTSL 1 (best) BASIC20.86■□□□□ 0.93
PCDH9Q9HC56 ARFRP1-202ENST00000607873 1061 ntTSL 2 BASIC20.86■□□□□ 0.93
PCDH9Q9HC56 AC073111.5-205ENST00000641717 521 ntBASIC20.86■□□□□ 0.93
PCDH9Q9HC56 ADA-201ENST00000372874 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDH9Q9HC56 SLC2A7-201ENST00000400906 1539 ntAPPRIS P1 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDH9Q9HC56 MMP28-201ENST00000605424 1928 ntAPPRIS P3 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDH9Q9HC56 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.86■□□□□ 0.93
PCDH9Q9HC56 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PCDH9Q9HC56 PEX6-201ENST00000244546 2696 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
PCDH9Q9HC56 AC007952.6-201ENST00000573168 2673 ntBASIC20.85■□□□□ 0.93
PCDH9Q9HC56 AC003957.1-201ENST00000625108 2673 ntBASIC20.85■□□□□ 0.93
PCDH9Q9HC56 ASPG-201ENST00000546892 1791 ntAPPRIS ALT2 TSL 1 (best) BASIC20.85■□□□□ 0.93
PCDH9Q9HC56 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
PCDH9Q9HC56 HAND2-AS1-237ENST00000616485 2420 ntTSL 2 BASIC20.85■□□□□ 0.93
PCDH9Q9HC56 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC20.85■□□□□ 0.93
PCDH9Q9HC56 BST1-202ENST00000382346 1993 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
PCDH9Q9HC56 CCDC47-202ENST00000403162 2195 ntAPPRIS P1 TSL 2 BASIC20.85■□□□□ 0.93
PCDH9Q9HC56 YTHDF3-213ENST00000621820 2363 ntTSL 2 BASIC20.85■□□□□ 0.93
PCDH9Q9HC56 AC080013.1-202ENST00000465477 674 ntTSL 5 BASIC20.85■□□□□ 0.93
PCDH9Q9HC56 AL591742.1-201ENST00000604433 565 ntBASIC20.85■□□□□ 0.93
PCDH9Q9HC56 AC244517.4-202ENST00000624089 484 ntTSL 3 BASIC20.85■□□□□ 0.93
PCDH9Q9HC56 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC20.85■□□□□ 0.93
PCDH9Q9HC56 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC20.85■□□□□ 0.93
PCDH9Q9HC56 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC20.85■□□□□ 0.93
PCDH9Q9HC56 IGFBP1-203ENST00000468955 1369 ntTSL 5 BASIC20.85■□□□□ 0.93
PCDH9Q9HC56 CYP21A2-222ENST00000435122 1914 ntTSL 2 BASIC20.84■□□□□ 0.93
PCDH9Q9HC56 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PCDH9Q9HC56 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC20.84■□□□□ 0.93
PCDH9Q9HC56 OSR2-210ENST00000523368 1519 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
PCDH9Q9HC56 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PCDH9Q9HC56 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PCDH9Q9HC56 PAN3-201ENST00000380958 2833 ntAPPRIS P2 TSL 5 BASIC20.84■□□□□ 0.93
PCDH9Q9HC56 TMEM189-201ENST00000371650 2222 ntAPPRIS ALT1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PCDH9Q9HC56 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PCDH9Q9HC56 MRPL39-201ENST00000307301 1199 ntAPPRIS ALT2 TSL 5 BASIC20.84■□□□□ 0.93
PCDH9Q9HC56 MRPL39-202ENST00000352957 1110 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
PCDH9Q9HC56 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
PCDH9Q9HC56 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC20.84■□□□□ 0.93
PCDH9Q9HC56 AC007322.1-201ENST00000426983 750 ntBASIC20.84■□□□□ 0.93
PCDH9Q9HC56 CDCA4P2-201ENST00000441182 718 ntBASIC20.84■□□□□ 0.93
PCDH9Q9HC56 NDUFS3-207ENST00000529276 558 ntTSL 2 BASIC20.84■□□□□ 0.93
PCDH9Q9HC56 GGTLC3-201ENST00000619998 968 ntAPPRIS P1 TSL 5 BASIC20.84■□□□□ 0.93
PCDH9Q9HC56 ENTPD8-201ENST00000344119 2111 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
PCDH9Q9HC56 CCT5-205ENST00000506600 1939 ntTSL 2 BASIC20.84■□□□□ 0.93
PCDH9Q9HC56 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC20.84■□□□□ 0.93
PCDH9Q9HC56 IL11RA-201ENST00000318041 1728 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
PCDH9Q9HC56 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
PCDH9Q9HC56 USP25-202ENST00000285681 5216 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
PCDH9Q9HC56 ABHD5-205ENST00000458276 1690 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
PCDH9Q9HC56 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC20.83■□□□□ 0.93
PCDH9Q9HC56 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
PCDH9Q9HC56 FAM167A-207ENST00000534308 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
PCDH9Q9HC56 SAPCD2P1-201ENST00000395413 1184 ntBASIC20.83■□□□□ 0.93
PCDH9Q9HC56 IL15RA-207ENST00000397250 584 ntTSL 2 BASIC20.83■□□□□ 0.93
PCDH9Q9HC56 C19orf73-201ENST00000408991 744 ntAPPRIS P1 BASIC20.83■□□□□ 0.93
PCDH9Q9HC56 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC20.83■□□□□ 0.93
PCDH9Q9HC56 CDV3P1-201ENST00000471403 739 ntBASIC20.83■□□□□ 0.93
PCDH9Q9HC56 IL15RA-215ENST00000528354 1037 ntTSL 2 BASIC20.83■□□□□ 0.93
PCDH9Q9HC56 PLLP-204ENST00000569059 665 ntTSL 3 BASIC20.83■□□□□ 0.93
PCDH9Q9HC56 IL15RA-220ENST00000620345 1115 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
PCDH9Q9HC56 PARP1-210ENST00000629232 477 ntTSL 5 BASIC20.83■□□□□ 0.93
PCDH9Q9HC56 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC20.83■□□□□ 0.93
PCDH9Q9HC56 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
PCDH9Q9HC56 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC20.83■□□□□ 0.93
PCDH9Q9HC56 SEPT1-201ENST00000321367 1592 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 27.5 ms