Protein–RNA interactions for Protein: Q96QK1

VPS35, Vacuolar protein sorting-associated protein 35, humanhuman

Predictions only

Length 796 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VPS35Q96QK1 C17orf107-202ENST00000521575 1275 ntAPPRIS ALT2 TSL 1 (best) BASIC20.06■□□□□ 0.8
VPS35Q96QK1 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC20.06■□□□□ 0.8
VPS35Q96QK1 CENPN-201ENST00000299572 1398 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
VPS35Q96QK1 NDUFAF6-203ENST00000396124 1798 ntAPPRIS P1 TSL 2 BASIC20.06■□□□□ 0.8
VPS35Q96QK1 ME3-212ENST00000543262 2311 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VPS35Q96QK1 NAT16-204ENST00000455377 1492 ntAPPRIS P2 TSL 1 (best) BASIC20.05■□□□□ 0.8
VPS35Q96QK1 LBX2-203ENST00000460508 1452 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
VPS35Q96QK1 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC20.05■□□□□ 0.8
VPS35Q96QK1 HTRA3-202ENST00000382512 2023 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
VPS35Q96QK1 FBXO31-207ENST00000618298 1871 ntTSL 5 BASIC20.05■□□□□ 0.8
VPS35Q96QK1 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
VPS35Q96QK1 DDX55-205ENST00000538744 1735 ntTSL 5 BASIC20.05■□□□□ 0.8
VPS35Q96QK1 TRIP13-201ENST00000166345 2672 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VPS35Q96QK1 EMILIN2-201ENST00000254528 5910 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VPS35Q96QK1 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC20.05■□□□□ 0.8
VPS35Q96QK1 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VPS35Q96QK1 FAM160B1-201ENST00000369246 666 ntTSL 2 BASIC20.05■□□□□ 0.8
VPS35Q96QK1 DENND3-207ENST00000518347 850 ntTSL 2 BASIC20.05■□□□□ 0.8
VPS35Q96QK1 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VPS35Q96QK1 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
VPS35Q96QK1 ZNF513-202ENST00000407879 2077 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
VPS35Q96QK1 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
VPS35Q96QK1 DAZAP2-201ENST00000412716 2598 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VPS35Q96QK1 ZBTB7A-201ENST00000322357 5422 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VPS35Q96QK1 LYN-202ENST00000519728 2297 ntAPPRIS P3 TSL 1 (best) BASIC20.05■□□□□ 0.8
VPS35Q96QK1 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
VPS35Q96QK1 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC20.04■□□□□ 0.8
VPS35Q96QK1 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS35Q96QK1 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC20.04■□□□□ 0.8
VPS35Q96QK1 INAFM2-202ENST00000638170 3052 ntAPPRIS P1 BASIC20.04■□□□□ 0.8
VPS35Q96QK1 PNMA2-204ENST00000522362 4965 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS35Q96QK1 PKM-215ENST00000565154 2004 ntAPPRIS ALT1 TSL 2 BASIC20.04■□□□□ 0.8
VPS35Q96QK1 ANKRD13D-202ENST00000447274 2881 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
VPS35Q96QK1 OTUB1-203ENST00000428192 1296 ntAPPRIS P2 TSL 2 BASIC20.04■□□□□ 0.8
VPS35Q96QK1 PDXDC2P-202ENST00000527016 543 ntTSL 3 BASIC20.04■□□□□ 0.8
VPS35Q96QK1 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC20.04■□□□□ 0.8
VPS35Q96QK1 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
VPS35Q96QK1 ASPSCR1-211ENST00000581647 720 ntTSL 2 BASIC20.04■□□□□ 0.8
VPS35Q96QK1 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC20.04■□□□□ 0.8
VPS35Q96QK1 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
VPS35Q96QK1 ULK2-202ENST00000395544 6010 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS35Q96QK1 DNAAF3-202ENST00000455045 2318 ntAPPRIS ALT2 TSL 1 (best) BASIC20.04■□□□□ 0.8
VPS35Q96QK1 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC20.04■□□□□ 0.8
VPS35Q96QK1 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC20.04■□□□□ 0.8
VPS35Q96QK1 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS35Q96QK1 AC092720.2-201ENST00000602388 1665 ntBASIC20.03■□□□□ 0.8
VPS35Q96QK1 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
VPS35Q96QK1 SLC2A8-215ENST00000610552 1763 ntTSL 3 BASIC20.03■□□□□ 0.8
VPS35Q96QK1 FAM20C-201ENST00000313766 2751 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS35Q96QK1 LRCH4-211ENST00000619071 2098 ntTSL 5 BASIC20.03■□□□□ 0.8
VPS35Q96QK1 GRB10-206ENST00000402497 2289 ntTSL 5 BASIC20.03■□□□□ 0.8
VPS35Q96QK1 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
VPS35Q96QK1 GATS-209ENST00000454084 1030 ntTSL 3 BASIC20.03■□□□□ 0.8
VPS35Q96QK1 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC20.03■□□□□ 0.8
VPS35Q96QK1 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC20.03■□□□□ 0.8
VPS35Q96QK1 KRT18P6-201ENST00000555540 1265 ntBASIC20.03■□□□□ 0.8
VPS35Q96QK1 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC20.03■□□□□ 0.8
VPS35Q96QK1 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC20.03■□□□□ 0.8
VPS35Q96QK1 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
VPS35Q96QK1 HLA-B-256ENST00000639848 1089 ntBASIC20.03■□□□□ 0.8
VPS35Q96QK1 IRX4-206ENST00000513692 2391 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS35Q96QK1 CRK-204ENST00000574295 1391 ntTSL 5 BASIC20.03■□□□□ 0.8
VPS35Q96QK1 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS35Q96QK1 AC243965.2-201ENST00000612576 2671 ntTSL 5 BASIC20.03■□□□□ 0.8
VPS35Q96QK1 MAMSTR-203ENST00000594582 1693 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
VPS35Q96QK1 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
VPS35Q96QK1 ALG9-215ENST00000616540 2069 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
VPS35Q96QK1 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC20.02■□□□□ 0.8
VPS35Q96QK1 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
VPS35Q96QK1 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
VPS35Q96QK1 TNFRSF14-201ENST00000355716 1707 ntAPPRIS P2 TSL 1 (best) BASIC20.02■□□□□ 0.8
VPS35Q96QK1 MEF2D-203ENST00000368240 1905 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
VPS35Q96QK1 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
VPS35Q96QK1 FGFR2-211ENST00000369059 3003 ntTSL 5 BASIC20.02■□□□□ 0.8
VPS35Q96QK1 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
VPS35Q96QK1 MFF-205ENST00000354503 1085 ntTSL 2 BASIC20.02■□□□□ 0.8
VPS35Q96QK1 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC20.02■□□□□ 0.8
VPS35Q96QK1 CKLF-CMTM1-204ENST00000532838 587 ntAPPRIS ALT2 TSL 4 BASIC20.02■□□□□ 0.8
VPS35Q96QK1 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC20.02■□□□□ 0.8
VPS35Q96QK1 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC20.02■□□□□ 0.8
VPS35Q96QK1 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
VPS35Q96QK1 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC20.02■□□□□ 0.8
VPS35Q96QK1 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
VPS35Q96QK1 CPNE9-202ENST00000383831 1751 ntTSL 5 BASIC20.02■□□□□ 0.8
VPS35Q96QK1 TMEM163-201ENST00000281924 1892 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
VPS35Q96QK1 AL606970.3-201ENST00000446811 2246 ntTSL 2 BASIC20.02■□□□□ 0.79
VPS35Q96QK1 CIRBP-225ENST00000589710 1835 ntTSL 2 BASIC20.02■□□□□ 0.79
VPS35Q96QK1 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC20.02■□□□□ 0.79
VPS35Q96QK1 RFXANK-201ENST00000303088 1407 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.79
VPS35Q96QK1 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC20.02■□□□□ 0.79
VPS35Q96QK1 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC20.02■□□□□ 0.79
VPS35Q96QK1 LONP1-203ENST00000585374 2882 ntTSL 5 BASIC20.01■□□□□ 0.79
VPS35Q96QK1 MON1A-201ENST00000296473 2370 ntAPPRIS P3 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS35Q96QK1 PAQR6-215ENST00000623241 1961 ntTSL 1 (best) BASIC20.01■□□□□ 0.79
VPS35Q96QK1 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS35Q96QK1 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC20.01■□□□□ 0.79
VPS35Q96QK1 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS35Q96QK1 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.01■□□□□ 0.79
VPS35Q96QK1 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC20.01■□□□□ 0.79
VPS35Q96QK1 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC20.01■□□□□ 0.79
Retrieved 100 of 98,524 protein–RNA pairs in 59.8 ms