Protein–RNA interactions for Protein: Q96A23

CPNE4, Copine-4, humanhuman

Predicted RBP Predictions only

Length 557 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE4Q96A23 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
CPNE4Q96A23 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC18.14■□□□□ 0.49
CPNE4Q96A23 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC18.14■□□□□ 0.49
CPNE4Q96A23 MEIS2-207ENST00000557796 2666 ntTSL 5 BASIC18.14■□□□□ 0.49
CPNE4Q96A23 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC18.14■□□□□ 0.49
CPNE4Q96A23 FGF2-201ENST00000264498 6775 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CPNE4Q96A23 PRMT5-204ENST00000397441 2418 ntTSL 2 BASIC18.13■□□□□ 0.49
CPNE4Q96A23 PDZRN4-202ENST00000402685 3347 ntAPPRIS P1 TSL 2 BASIC18.13■□□□□ 0.49
CPNE4Q96A23 LRCH4-209ENST00000497245 2014 ntTSL 5 BASIC18.13■□□□□ 0.49
CPNE4Q96A23 MAML1-201ENST00000292599 5723 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CPNE4Q96A23 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CPNE4Q96A23 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CPNE4Q96A23 CDH5-202ENST00000539168 1672 ntTSL 2 BASIC18.13■□□□□ 0.49
CPNE4Q96A23 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CPNE4Q96A23 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CPNE4Q96A23 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CPNE4Q96A23 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC18.13■□□□□ 0.49
CPNE4Q96A23 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC18.13■□□□□ 0.49
CPNE4Q96A23 TRAPPC5-203ENST00000595985 411 ntTSL 3 BASIC18.13■□□□□ 0.49
CPNE4Q96A23 SLC35A3-218ENST00000639994 1114 ntTSL 5 BASIC18.13■□□□□ 0.49
CPNE4Q96A23 RAVER2-201ENST00000294428 4398 ntAPPRIS ALT2 TSL 5 BASIC18.13■□□□□ 0.49
CPNE4Q96A23 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CPNE4Q96A23 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CPNE4Q96A23 STK25-205ENST00000405883 1904 ntTSL 2 BASIC18.13■□□□□ 0.49
CPNE4Q96A23 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC18.13■□□□□ 0.49
CPNE4Q96A23 CRK-204ENST00000574295 1391 ntTSL 5 BASIC18.13■□□□□ 0.49
CPNE4Q96A23 KMT5B-201ENST00000304363 5837 ntAPPRIS P1 TSL 5 BASIC18.13■□□□□ 0.49
CPNE4Q96A23 COLEC12-201ENST00000400256 5742 ntAPPRIS P1 TSL 1 (best) BASIC18.13■□□□□ 0.49
CPNE4Q96A23 MORN1-202ENST00000378529 1500 ntAPPRIS ALT2 TSL 1 (best) BASIC18.13■□□□□ 0.49
CPNE4Q96A23 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC18.13■□□□□ 0.49
CPNE4Q96A23 BID-203ENST00000399765 1879 ntTSL 2 BASIC18.12■□□□□ 0.49
CPNE4Q96A23 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CPNE4Q96A23 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC18.12■□□□□ 0.49
CPNE4Q96A23 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CPNE4Q96A23 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC18.12■□□□□ 0.49
CPNE4Q96A23 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC18.12■□□□□ 0.49
CPNE4Q96A23 CD99-210ENST00000611428 1243 ntAPPRIS ALT2 TSL 1 (best) BASIC18.12■□□□□ 0.49
CPNE4Q96A23 HLA-B-256ENST00000639848 1089 ntBASIC18.12■□□□□ 0.49
CPNE4Q96A23 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC18.12■□□□□ 0.49
CPNE4Q96A23 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC18.12■□□□□ 0.49
CPNE4Q96A23 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC18.12■□□□□ 0.49
CPNE4Q96A23 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC18.12■□□□□ 0.49
CPNE4Q96A23 BPTF-201ENST00000306378 9688 ntAPPRIS P2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CPNE4Q96A23 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CPNE4Q96A23 EZH2-201ENST00000320356 2639 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
CPNE4Q96A23 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CPNE4Q96A23 MFF-205ENST00000354503 1085 ntTSL 2 BASIC18.11■□□□□ 0.49
CPNE4Q96A23 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CPNE4Q96A23 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC18.11■□□□□ 0.49
CPNE4Q96A23 GATS-209ENST00000454084 1030 ntTSL 3 BASIC18.11■□□□□ 0.49
CPNE4Q96A23 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC18.11■□□□□ 0.49
CPNE4Q96A23 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC18.11■□□□□ 0.49
CPNE4Q96A23 RBM42-204ENST00000589559 1328 ntTSL 5 BASIC18.11■□□□□ 0.49
CPNE4Q96A23 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CPNE4Q96A23 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC18.11■□□□□ 0.49
CPNE4Q96A23 SHANK1-203ENST00000391813 4785 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CPNE4Q96A23 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC18.11■□□□□ 0.49
CPNE4Q96A23 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC18.11■□□□□ 0.49
CPNE4Q96A23 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC18.11■□□□□ 0.49
CPNE4Q96A23 CAMK2B-216ENST00000440254 2097 ntAPPRIS P4 TSL 1 (best) BASIC18.11■□□□□ 0.49
CPNE4Q96A23 PATZ1-201ENST00000215919 2516 ntTSL 1 (best) BASIC18.11■□□□□ 0.49
CPNE4Q96A23 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC18.1■□□□□ 0.49
CPNE4Q96A23 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC18.1■□□□□ 0.49
CPNE4Q96A23 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
CPNE4Q96A23 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CPNE4Q96A23 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CPNE4Q96A23 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CPNE4Q96A23 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CPNE4Q96A23 SETD6-201ENST00000219315 1553 ntAPPRIS ALT2 TSL 1 (best) BASIC18.1■□□□□ 0.49
CPNE4Q96A23 UBE2L6-202ENST00000340573 1573 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CPNE4Q96A23 MAZ-214ENST00000568544 1464 ntTSL 2 BASIC18.1■□□□□ 0.49
CPNE4Q96A23 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC18.1■□□□□ 0.49
CPNE4Q96A23 WDR37-203ENST00000381329 1307 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CPNE4Q96A23 HDAC4-201ENST00000345617 8976 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CPNE4Q96A23 HDAC4-215ENST00000543185 8990 ntTSL 5 BASIC18.1■□□□□ 0.49
CPNE4Q96A23 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC18.1■□□□□ 0.49
CPNE4Q96A23 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC18.1■□□□□ 0.49
CPNE4Q96A23 HCFC1R1-202ENST00000354679 765 ntTSL 2 BASIC18.1■□□□□ 0.49
CPNE4Q96A23 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC18.1■□□□□ 0.49
CPNE4Q96A23 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC18.1■□□□□ 0.49
CPNE4Q96A23 CD99P1-205ENST00000527459 561 ntBASIC18.1■□□□□ 0.49
CPNE4Q96A23 AC060766.5-201ENST00000590539 871 ntBASIC18.1■□□□□ 0.49
CPNE4Q96A23 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC18.1■□□□□ 0.49
CPNE4Q96A23 UBE2J2-201ENST00000347370 2387 ntTSL 3 BASIC18.1■□□□□ 0.49
CPNE4Q96A23 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CPNE4Q96A23 ACOT2-201ENST00000238651 1774 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CPNE4Q96A23 EEF1A2-202ENST00000298049 1748 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CPNE4Q96A23 CASKIN1-201ENST00000343516 5759 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CPNE4Q96A23 MXRA8-201ENST00000309212 2273 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CPNE4Q96A23 TTC9B-201ENST00000311308 843 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CPNE4Q96A23 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CPNE4Q96A23 AL161908.1-201ENST00000451449 449 ntTSL 2 BASIC18.09■□□□□ 0.49
CPNE4Q96A23 ABCC3-217ENST00000515707 656 ntTSL 3 BASIC18.09■□□□□ 0.49
CPNE4Q96A23 RNA5SP413-201ENST00000516373 109 ntBASIC18.09■□□□□ 0.49
CPNE4Q96A23 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC18.09■□□□□ 0.49
CPNE4Q96A23 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC18.09■□□□□ 0.49
CPNE4Q96A23 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC18.09■□□□□ 0.49
CPNE4Q96A23 UBA5-211ENST00000493720 2058 ntTSL 5 BASIC18.09■□□□□ 0.49
CPNE4Q96A23 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC18.09■□□□□ 0.49
CPNE4Q96A23 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC18.09■□□□□ 0.49
Retrieved 100 of 98,524 protein–RNA pairs in 70 ms