Protein–RNA interactions for Protein: Q8N8U3

RTL3, Retrotransposon Gag-like protein 3, humanhuman

Known RBP Predictions only

Length 475 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
RTL3Q8N8U3 ME3-202ENST00000393324 2240 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
RTL3Q8N8U3 BACE1-209ENST00000513780 1465 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
RTL3Q8N8U3 SLC25A27-202ENST00000411689 2526 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
RTL3Q8N8U3 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RTL3Q8N8U3 DNAJB5-203ENST00000453597 2589 ntTSL 2 BASIC20.75■□□□□ 0.91
RTL3Q8N8U3 DPP3P2-201ENST00000416030 1696 ntBASIC20.75■□□□□ 0.91
RTL3Q8N8U3 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RTL3Q8N8U3 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC20.75■□□□□ 0.91
RTL3Q8N8U3 EIF4E3-203ENST00000421769 777 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
RTL3Q8N8U3 WWTR1-AS1-203ENST00000495094 975 ntTSL 1 (best) BASIC20.75■□□□□ 0.91
RTL3Q8N8U3 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC20.75■□□□□ 0.91
RTL3Q8N8U3 AC083880.1-201ENST00000608266 535 ntBASIC20.75■□□□□ 0.91
RTL3Q8N8U3 SYNC-201ENST00000373484 1824 ntAPPRIS ALT2 TSL 2 BASIC20.75■□□□□ 0.91
RTL3Q8N8U3 XBP1-203ENST00000403532 1824 ntAPPRIS ALT1 TSL 3 BASIC20.75■□□□□ 0.91
RTL3Q8N8U3 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC20.75■□□□□ 0.91
RTL3Q8N8U3 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RTL3Q8N8U3 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC20.75■□□□□ 0.91
RTL3Q8N8U3 PLD6-201ENST00000321560 2560 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
RTL3Q8N8U3 AVPR2-202ENST00000358927 1763 ntAPPRIS P1 TSL 5 BASIC20.74■□□□□ 0.91
RTL3Q8N8U3 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC20.74■□□□□ 0.91
RTL3Q8N8U3 NUDT11-201ENST00000375992 2385 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
RTL3Q8N8U3 LINC01006-201ENST00000333319 2292 ntBASIC20.74■□□□□ 0.91
RTL3Q8N8U3 AC092667.1-201ENST00000434301 2586 ntBASIC20.74■□□□□ 0.91
RTL3Q8N8U3 MDK-204ENST00000395569 686 ntTSL 1 (best) BASIC20.74■□□□□ 0.91
RTL3Q8N8U3 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC20.74■□□□□ 0.91
RTL3Q8N8U3 ACHE-207ENST00000428317 2159 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
RTL3Q8N8U3 AKAIN1-201ENST00000434239 575 ntAPPRIS P1 TSL 2 BASIC20.74■□□□□ 0.91
RTL3Q8N8U3 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC20.74■□□□□ 0.91
RTL3Q8N8U3 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC20.74■□□□□ 0.91
RTL3Q8N8U3 DISC1-213ENST00000537876 2349 ntAPPRIS ALT2 TSL 2 BASIC20.74■□□□□ 0.91
RTL3Q8N8U3 AL049874.3-201ENST00000557618 868 ntTSL 3 BASIC20.74■□□□□ 0.91
RTL3Q8N8U3 FSTL3-201ENST00000166139 2542 ntAPPRIS P1 TSL 1 (best) BASIC20.74■□□□□ 0.91
RTL3Q8N8U3 NDRG2-242ENST00000555158 2216 ntAPPRIS ALT1 TSL 1 (best) BASIC20.74■□□□□ 0.91
RTL3Q8N8U3 TSSK6-201ENST00000585580 1467 ntAPPRIS P1 BASIC20.74■□□□□ 0.91
RTL3Q8N8U3 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC20.73■□□□□ 0.91
RTL3Q8N8U3 TRIM3-202ENST00000359518 3042 ntAPPRIS P1 TSL 5 BASIC20.73■□□□□ 0.91
RTL3Q8N8U3 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
RTL3Q8N8U3 LRR1-202ENST00000318317 957 ntTSL 1 (best) BASIC20.73■□□□□ 0.91
RTL3Q8N8U3 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC20.73■□□□□ 0.91
RTL3Q8N8U3 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC20.73■□□□□ 0.91
RTL3Q8N8U3 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC20.73■□□□□ 0.91
RTL3Q8N8U3 HEY2-201ENST00000368364 2678 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
RTL3Q8N8U3 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC20.73■□□□□ 0.91
RTL3Q8N8U3 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.73■□□□□ 0.91
RTL3Q8N8U3 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC20.73■□□□□ 0.91
RTL3Q8N8U3 NYAP1-202ENST00000454988 2777 ntTSL 5 BASIC20.73■□□□□ 0.91
RTL3Q8N8U3 AP005233.1-201ENST00000562341 2424 ntTSL 2 BASIC20.73■□□□□ 0.91
RTL3Q8N8U3 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
RTL3Q8N8U3 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
RTL3Q8N8U3 H19-201ENST00000411754 1788 ntTSL 5 BASIC20.72■□□□□ 0.91
RTL3Q8N8U3 SNRPA-201ENST00000243563 1621 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
RTL3Q8N8U3 PTBP1P-201ENST00000554374 1601 ntBASIC20.72■□□□□ 0.91
RTL3Q8N8U3 SUSD1-203ENST00000374264 2754 ntAPPRIS ALT2 TSL 1 (best) BASIC20.72■□□□□ 0.91
RTL3Q8N8U3 ACBD4-201ENST00000321854 1806 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
RTL3Q8N8U3 PHF20L1-214ENST00000485595 1810 ntTSL 2 BASIC20.72■□□□□ 0.91
RTL3Q8N8U3 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
RTL3Q8N8U3 CYYR1-202ENST00000400043 735 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
RTL3Q8N8U3 APTR-205ENST00000447009 902 ntTSL 2 BASIC20.72■□□□□ 0.91
RTL3Q8N8U3 IDH1-AS1-202ENST00000448588 489 ntTSL 3 BASIC20.72■□□□□ 0.91
RTL3Q8N8U3 MIF-AS1-201ENST00000406213 1476 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
RTL3Q8N8U3 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
RTL3Q8N8U3 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
RTL3Q8N8U3 GLIPR2-203ENST00000396613 1917 ntTSL 4 BASIC20.72■□□□□ 0.91
RTL3Q8N8U3 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC20.72■□□□□ 0.91
RTL3Q8N8U3 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC20.72■□□□□ 0.91
RTL3Q8N8U3 MEGF6-202ENST00000356575 5455 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
RTL3Q8N8U3 OSBPL10-204ENST00000438237 2624 ntAPPRIS ALT2 TSL 2 BASIC20.72■□□□□ 0.91
RTL3Q8N8U3 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC20.72■□□□□ 0.91
RTL3Q8N8U3 DLK2-201ENST00000357338 2038 ntAPPRIS P3 TSL 2 BASIC20.71■□□□□ 0.91
RTL3Q8N8U3 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
RTL3Q8N8U3 GLG1-214ENST00000627032 2147 ntTSL 5 BASIC20.71■□□□□ 0.91
RTL3Q8N8U3 CACNB2-203ENST00000352115 1911 ntTSL 1 (best) BASIC20.71■□□□□ 0.91
RTL3Q8N8U3 ODC1-202ENST00000405333 1943 ntAPPRIS P1 TSL 2 BASIC20.71■□□□□ 0.91
RTL3Q8N8U3 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC20.71■□□□□ 0.91
RTL3Q8N8U3 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC20.71■□□□□ 0.91
RTL3Q8N8U3 CARM1-201ENST00000327064 3330 ntAPPRIS P2 TSL 1 (best) BASIC20.71■□□□□ 0.91
RTL3Q8N8U3 MFF-205ENST00000354503 1085 ntTSL 2 BASIC20.71■□□□□ 0.91
RTL3Q8N8U3 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
RTL3Q8N8U3 CT47A12-201ENST00000419982 1165 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
RTL3Q8N8U3 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC20.71■□□□□ 0.91
RTL3Q8N8U3 KLF13-207ENST00000560473 489 ntTSL 3 BASIC20.71■□□□□ 0.91
RTL3Q8N8U3 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC20.71■□□□□ 0.91
RTL3Q8N8U3 AL160396.2-202ENST00000636692 566 ntAPPRIS ALT2 TSL 5 BASIC20.71■□□□□ 0.91
RTL3Q8N8U3 SLC22A17-202ENST00000354772 2238 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
RTL3Q8N8U3 AL158151.1-201ENST00000372490 2047 ntTSL 2 BASIC20.71■□□□□ 0.91
RTL3Q8N8U3 TPCN2-205ENST00000542467 2000 ntTSL 2 BASIC20.71■□□□□ 0.91
RTL3Q8N8U3 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC20.71■□□□□ 0.91
RTL3Q8N8U3 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC20.71■□□□□ 0.91
RTL3Q8N8U3 ZDHHC8P1-201ENST00000255890 2382 ntTSL 2 BASIC20.71■□□□□ 0.91
RTL3Q8N8U3 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC20.71■□□□□ 0.91
RTL3Q8N8U3 SMG8-203ENST00000578922 2178 ntBASIC20.7■□□□□ 0.91
RTL3Q8N8U3 ADRA1A-203ENST00000380572 1697 ntTSL 1 (best) BASIC20.7■□□□□ 0.91
RTL3Q8N8U3 CACNA1A-218ENST00000635895 8657 ntAPPRIS ALT2 TSL 5 BASIC20.7■□□□□ 0.9
RTL3Q8N8U3 CACNA1A-257ENST00000638009 8665 ntAPPRIS ALT2 TSL 1 (best) BASIC20.7■□□□□ 0.9
RTL3Q8N8U3 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
RTL3Q8N8U3 DNAJC7-203ENST00000457167 2022 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
RTL3Q8N8U3 GNA15-201ENST00000262958 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
RTL3Q8N8U3 TRAPPC5-201ENST00000317378 790 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
RTL3Q8N8U3 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC20.7■□□□□ 0.9
RTL3Q8N8U3 MMP25-AS1-204ENST00000572574 794 ntTSL 5 BASIC20.7■□□□□ 0.9
Retrieved 100 of 98,524 protein–RNA pairs in 36.7 ms