Protein–RNA interactions for Protein: Q8N2C3

DEPDC4, DEP domain-containing protein 4, humanhuman

Predictions only

Length 294 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DEPDC4Q8N2C3 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC18.74■□□□□ 0.59
DEPDC4Q8N2C3 ZNF281-202ENST00000367352 2933 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
DEPDC4Q8N2C3 IMPDH1-208ENST00000470772 1888 ntAPPRIS ALT1 TSL 5 BASIC18.73■□□□□ 0.59
DEPDC4Q8N2C3 FOXC1-201ENST00000380874 3926 ntAPPRIS P1 BASIC18.73■□□□□ 0.59
DEPDC4Q8N2C3 AC092720.2-201ENST00000602388 1665 ntBASIC18.73■□□□□ 0.59
DEPDC4Q8N2C3 PRSS12-201ENST00000296498 4809 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
DEPDC4Q8N2C3 SPNS1-201ENST00000311008 2208 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
DEPDC4Q8N2C3 NECAB1-201ENST00000417640 5289 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
DEPDC4Q8N2C3 SPHK2-211ENST00000600537 2136 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
DEPDC4Q8N2C3 ILDR2-207ENST00000529071 2566 ntAPPRIS ALT2 TSL 5 BASIC18.73■□□□□ 0.59
DEPDC4Q8N2C3 NGLY1-202ENST00000280700 2473 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
DEPDC4Q8N2C3 MGAT1-204ENST00000427865 1919 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
DEPDC4Q8N2C3 UCHL1-201ENST00000284440 1172 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
DEPDC4Q8N2C3 PYCR3-203ENST00000433751 1000 ntAPPRIS ALT2 TSL 2 BASIC18.73■□□□□ 0.59
DEPDC4Q8N2C3 NDUFB2-207ENST00000465506 1101 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
DEPDC4Q8N2C3 UCHL1-210ENST00000512788 785 ntTSL 3 BASIC18.73■□□□□ 0.59
DEPDC4Q8N2C3 AL355102.2-201ENST00000553811 600 ntAPPRIS P1 TSL 2 BASIC18.73■□□□□ 0.59
DEPDC4Q8N2C3 AL133516.1-201ENST00000633012 540 ntTSL 5 BASIC18.73■□□□□ 0.59
DEPDC4Q8N2C3 PRDM1-202ENST00000369091 2612 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
DEPDC4Q8N2C3 ARRDC2-201ENST00000222250 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.73■□□□□ 0.59
DEPDC4Q8N2C3 STARD10-213ENST00000538536 1678 ntTSL 1 (best) BASIC18.73■□□□□ 0.59
DEPDC4Q8N2C3 GLS-202ENST00000338435 4475 ntAPPRIS ALT1 TSL 1 (best) BASIC18.72■□□□□ 0.59
DEPDC4Q8N2C3 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
DEPDC4Q8N2C3 AOC3-204ENST00000591562 2522 ntTSL 2 BASIC18.72■□□□□ 0.59
DEPDC4Q8N2C3 ST3GAL4-204ENST00000444328 1812 ntAPPRIS ALT1 TSL 5 BASIC18.72■□□□□ 0.59
DEPDC4Q8N2C3 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC18.72■□□□□ 0.59
DEPDC4Q8N2C3 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC18.72■□□□□ 0.59
DEPDC4Q8N2C3 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
DEPDC4Q8N2C3 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
DEPDC4Q8N2C3 ANKRD63-201ENST00000434396 1143 ntAPPRIS P1 BASIC18.72■□□□□ 0.59
DEPDC4Q8N2C3 AL390816.2-201ENST00000554252 737 ntTSL 3 BASIC18.72■□□□□ 0.59
DEPDC4Q8N2C3 SUZ12P1-202ENST00000578070 929 ntTSL 5 BASIC18.72■□□□□ 0.59
DEPDC4Q8N2C3 AC022517.1-201ENST00000592429 346 ntBASIC18.72■□□□□ 0.59
DEPDC4Q8N2C3 AC138696.1-201ENST00000522452 2897 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
DEPDC4Q8N2C3 SLC25A22-216ENST00000531214 1790 ntAPPRIS P1 TSL 2 BASIC18.72■□□□□ 0.59
DEPDC4Q8N2C3 KIAA1324L-208ENST00000450689 6841 ntAPPRIS ALT2 TSL 5 BASIC18.72■□□□□ 0.59
DEPDC4Q8N2C3 ARNT-202ENST00000358595 4887 ntAPPRIS P3 TSL 1 (best) BASIC18.72■□□□□ 0.59
DEPDC4Q8N2C3 EXOC3-AS1-202ENST00000623673 1663 ntBASIC18.72■□□□□ 0.59
DEPDC4Q8N2C3 AP000547.3-201ENST00000592918 1576 ntTSL 1 (best) BASIC18.72■□□□□ 0.59
DEPDC4Q8N2C3 HOXA13-201ENST00000222753 5030 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
DEPDC4Q8N2C3 STXBP6-203ENST00000419632 1970 ntAPPRIS P1 TSL 1 (best) BASIC18.72■□□□□ 0.59
DEPDC4Q8N2C3 DGKZ-203ENST00000421244 2862 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
DEPDC4Q8N2C3 KCNH6-203ENST00000580652 1703 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
DEPDC4Q8N2C3 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
DEPDC4Q8N2C3 PRKAR1B-212ENST00000544935 2494 ntAPPRIS P1 TSL 5 BASIC18.71■□□□□ 0.59
DEPDC4Q8N2C3 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
DEPDC4Q8N2C3 RAB28-208ENST00000630951 1679 ntTSL 5 BASIC18.71■□□□□ 0.59
DEPDC4Q8N2C3 UCN-201ENST00000296099 795 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
DEPDC4Q8N2C3 GP9-201ENST00000307395 889 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
DEPDC4Q8N2C3 GUK1-207ENST00000366726 873 ntAPPRIS P3 TSL 3 BASIC18.71■□□□□ 0.59
DEPDC4Q8N2C3 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC18.71■□□□□ 0.59
DEPDC4Q8N2C3 ATE1-AS1-201ENST00000437593 951 ntTSL 2 BASIC18.71■□□□□ 0.59
DEPDC4Q8N2C3 SUSD2-201ENST00000358321 3404 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
DEPDC4Q8N2C3 AIRN-201ENST00000601203 4374 ntBASIC18.71■□□□□ 0.59
DEPDC4Q8N2C3 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
DEPDC4Q8N2C3 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
DEPDC4Q8N2C3 MAPK8IP3-216ENST00000610761 5626 ntAPPRIS ALT1 TSL 1 (best) BASIC18.71■□□□□ 0.59
DEPDC4Q8N2C3 ZNF852-201ENST00000436261 1968 ntAPPRIS P1 TSL 2 BASIC18.71■□□□□ 0.59
DEPDC4Q8N2C3 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC18.71■□□□□ 0.59
DEPDC4Q8N2C3 TRPC1-203ENST00000476941 3061 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
DEPDC4Q8N2C3 MARK2-211ENST00000513765 2671 ntAPPRIS ALT2 TSL 1 (best) BASIC18.71■□□□□ 0.59
DEPDC4Q8N2C3 DCBLD2-201ENST00000326840 6122 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.59
DEPDC4Q8N2C3 TYMP-202ENST00000395678 1614 ntAPPRIS P3 TSL 1 (best) BASIC18.71■□□□□ 0.58
DEPDC4Q8N2C3 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC18.71■□□□□ 0.58
DEPDC4Q8N2C3 PACRGL-227ENST00000513459 1773 ntTSL 5 BASIC18.7■□□□□ 0.58
DEPDC4Q8N2C3 NFATC2IP-201ENST00000320805 4569 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
DEPDC4Q8N2C3 ZFAND6-224ENST00000618205 1659 ntAPPRIS P1 TSL 5 BASIC18.7■□□□□ 0.58
DEPDC4Q8N2C3 PTGER3-212ENST00000628037 1815 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
DEPDC4Q8N2C3 ZC3H12D-201ENST00000409806 5791 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
DEPDC4Q8N2C3 AC138932.1-201ENST00000534164 6830 ntBASIC18.7■□□□□ 0.58
DEPDC4Q8N2C3 STIM2-211ENST00000639195 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC18.7■□□□□ 0.58
DEPDC4Q8N2C3 KMT5B-206ENST00000405515 2869 ntTSL 5 BASIC18.7■□□□□ 0.58
DEPDC4Q8N2C3 FOXD2-201ENST00000334793 4675 ntAPPRIS P1 BASIC18.7■□□□□ 0.58
DEPDC4Q8N2C3 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
DEPDC4Q8N2C3 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC18.7■□□□□ 0.58
DEPDC4Q8N2C3 AC009237.3-201ENST00000393279 1427 ntBASIC18.7■□□□□ 0.58
DEPDC4Q8N2C3 THOP1-202ENST00000395212 1877 ntTSL 2 BASIC18.7■□□□□ 0.58
DEPDC4Q8N2C3 KCNC2-204ENST00000540018 2168 ntAPPRIS ALT2 TSL 2 BASIC18.7■□□□□ 0.58
DEPDC4Q8N2C3 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC18.7■□□□□ 0.58
DEPDC4Q8N2C3 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC18.7■□□□□ 0.58
DEPDC4Q8N2C3 AC011511.3-201ENST00000587088 355 ntTSL 2 BASIC18.7■□□□□ 0.58
DEPDC4Q8N2C3 TPRG1LP1-201ENST00000598702 760 ntBASIC18.7■□□□□ 0.58
DEPDC4Q8N2C3 RNF114-202ENST00000622920 1284 ntTSL 5 BASIC18.7■□□□□ 0.58
DEPDC4Q8N2C3 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
DEPDC4Q8N2C3 SDHA-201ENST00000264932 2390 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
DEPDC4Q8N2C3 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC18.7■□□□□ 0.58
DEPDC4Q8N2C3 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC18.7■□□□□ 0.58
DEPDC4Q8N2C3 NBL1-209ENST00000548815 1953 ntAPPRIS P3 TSL 3 BASIC18.7■□□□□ 0.58
DEPDC4Q8N2C3 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC18.69■□□□□ 0.58
DEPDC4Q8N2C3 AL020996.1-203ENST00000536896 2307 ntBASIC18.69■□□□□ 0.58
DEPDC4Q8N2C3 YBX1-201ENST00000321358 1514 ntAPPRIS P1 TSL 1 (best) BASIC18.69■□□□□ 0.58
DEPDC4Q8N2C3 MAP4K4-204ENST00000350198 7316 ntTSL 5 BASIC18.69■□□□□ 0.58
DEPDC4Q8N2C3 MYH7B-201ENST00000262873 6293 ntAPPRIS P2 TSL 1 (best) BASIC18.69■□□□□ 0.58
DEPDC4Q8N2C3 SPI1-202ENST00000378538 1403 ntAPPRIS P3 TSL 1 (best) BASIC18.69■□□□□ 0.58
DEPDC4Q8N2C3 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC18.69■□□□□ 0.58
DEPDC4Q8N2C3 COX20-201ENST00000366528 568 ntTSL 2 BASIC18.69■□□□□ 0.58
DEPDC4Q8N2C3 LRRC3C-201ENST00000377924 891 ntAPPRIS P1 TSL 3 BASIC18.69■□□□□ 0.58
DEPDC4Q8N2C3 FXN-202ENST00000396364 980 ntTSL 5 BASIC18.69■□□□□ 0.58
DEPDC4Q8N2C3 LTC4S-202ENST00000401985 486 ntTSL 3 BASIC18.69■□□□□ 0.58
DEPDC4Q8N2C3 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC18.69■□□□□ 0.58
Retrieved 100 of 98,524 protein–RNA pairs in 29.1 ms