Protein–RNA interactions for Protein: Q8IWP9

CCDC28A, Coiled-coil domain-containing protein 28A, humanhuman

Predictions only

Length 274 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28AQ8IWP9 DMRTA1-201ENST00000325870 5569 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC28AQ8IWP9 HMGXB3-206ENST00000613459 5567 ntAPPRIS ALT2 TSL 5 BASIC16.86■□□□□ 0.29
CCDC28AQ8IWP9 NFKB2-201ENST00000189444 3011 ntAPPRIS ALT1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC28AQ8IWP9 CDH24-204ENST00000487137 3438 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
CCDC28AQ8IWP9 AHCYL2-201ENST00000325006 5056 ntAPPRIS P3 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC28AQ8IWP9 PNCK-215ENST00000447676 1585 ntTSL 2 BASIC16.86■□□□□ 0.29
CCDC28AQ8IWP9 AC124067.4-201ENST00000519691 2379 ntBASIC16.86■□□□□ 0.29
CCDC28AQ8IWP9 PIGV-201ENST00000078527 2367 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC28AQ8IWP9 PRKAR2A-201ENST00000265563 6471 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC28AQ8IWP9 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC16.86■□□□□ 0.29
CCDC28AQ8IWP9 NDUFA10-204ENST00000407129 699 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC28AQ8IWP9 FP236240.1-201ENST00000619537 1116 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC28AQ8IWP9 GNE-201ENST00000377902 2565 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC28AQ8IWP9 PROSER1-201ENST00000352251 5168 ntAPPRIS P2 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC28AQ8IWP9 ASB6-202ENST00000277459 2180 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC28AQ8IWP9 PTOV1-AS1-201ENST00000596521 2155 ntTSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC28AQ8IWP9 NOMO3-201ENST00000263012 3911 ntAPPRIS ALT2 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC28AQ8IWP9 SLCO4A1-202ENST00000370507 2665 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC28AQ8IWP9 DMRTA2-201ENST00000404795 3137 ntAPPRIS P1 TSL 5 BASIC16.86■□□□□ 0.29
CCDC28AQ8IWP9 PTPN5-202ENST00000396166 2299 ntTSL 2 BASIC16.86■□□□□ 0.29
CCDC28AQ8IWP9 SLC35E1-208ENST00000595753 5099 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC28AQ8IWP9 RNF169-201ENST00000299563 7823 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC28AQ8IWP9 CCDC157-201ENST00000338306 3001 ntAPPRIS P3 TSL 5 BASIC16.86■□□□□ 0.29
CCDC28AQ8IWP9 SNX32-201ENST00000308342 2003 ntAPPRIS P1 TSL 1 (best) BASIC16.86■□□□□ 0.29
CCDC28AQ8IWP9 TAOK2-202ENST00000308893 5169 ntAPPRIS P4 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC28AQ8IWP9 SIGLEC15-201ENST00000389474 1573 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC28AQ8IWP9 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC16.85■□□□□ 0.29
CCDC28AQ8IWP9 RBM42-203ENST00000588161 1609 ntAPPRIS ALT1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC28AQ8IWP9 SIN3A-203ENST00000394949 4930 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC28AQ8IWP9 HTR7P1-202ENST00000624664 4411 ntBASIC16.85■□□□□ 0.29
CCDC28AQ8IWP9 LRRC56-201ENST00000270115 2769 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC28AQ8IWP9 HOXA4-201ENST00000360046 1747 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC28AQ8IWP9 GLT8D2-205ENST00000548660 1835 ntAPPRIS P1 TSL 2 BASIC16.85■□□□□ 0.29
CCDC28AQ8IWP9 COPRS-201ENST00000302362 968 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC28AQ8IWP9 GUK1-208ENST00000366728 842 ntTSL 2 BASIC16.85■□□□□ 0.29
CCDC28AQ8IWP9 AC064853.2-201ENST00000641246 144 ntAPPRIS P1 BASIC16.85■□□□□ 0.29
CCDC28AQ8IWP9 GPR6-202ENST00000414000 1945 ntTSL 2 BASIC16.85■□□□□ 0.29
CCDC28AQ8IWP9 LRRN4CL-201ENST00000317449 2585 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC28AQ8IWP9 VPS26A-202ENST00000373382 3229 ntAPPRIS P1 TSL 5 BASIC16.85■□□□□ 0.29
CCDC28AQ8IWP9 KDM5C-204ENST00000375401 6031 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC28AQ8IWP9 EML3-216ENST00000529309 2909 ntTSL 2 BASIC16.85■□□□□ 0.29
CCDC28AQ8IWP9 TBC1D19-201ENST00000264866 2263 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC28AQ8IWP9 TTLL10-203ENST00000379290 2283 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC28AQ8IWP9 PWWP2AP1-201ENST00000429776 2273 ntBASIC16.85■□□□□ 0.29
CCDC28AQ8IWP9 PRDM14-201ENST00000276594 2344 ntAPPRIS P1 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC28AQ8IWP9 KIF1BP-204ENST00000626493 2337 ntTSL 5 BASIC16.85■□□□□ 0.29
CCDC28AQ8IWP9 ATXN2-201ENST00000377617 4702 ntAPPRIS P3 TSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC28AQ8IWP9 NOS3-210ENST00000484524 2537 ntTSL 1 (best) BASIC16.85■□□□□ 0.29
CCDC28AQ8IWP9 ADPGK-AS1-201ENST00000563592 2730 ntTSL 2 BASIC16.84■□□□□ 0.29
CCDC28AQ8IWP9 GATA6-201ENST00000269216 3770 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC28AQ8IWP9 NR4A2-204ENST00000409572 2878 ntAPPRIS P1 TSL 5 BASIC16.84■□□□□ 0.29
CCDC28AQ8IWP9 AMDHD2-203ENST00000413459 2049 ntTSL 2 BASIC16.84■□□□□ 0.29
CCDC28AQ8IWP9 PCBP3-205ENST00000400310 2168 ntTSL 2 BASIC16.84■□□□□ 0.29
CCDC28AQ8IWP9 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC28AQ8IWP9 SOWAHC-201ENST00000356454 4657 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
CCDC28AQ8IWP9 COL18A1-202ENST00000355480 5924 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC28AQ8IWP9 DAGLB-204ENST00000436575 2385 ntTSL 2 BASIC16.84■□□□□ 0.29
CCDC28AQ8IWP9 SHISA5-220ENST00000619810 2385 ntTSL 2 BASIC16.84■□□□□ 0.29
CCDC28AQ8IWP9 FAM129C-202ENST00000335393 2508 ntAPPRIS P3 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC28AQ8IWP9 FKBP1B-202ENST00000380991 1010 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC28AQ8IWP9 KRTAP5-5-201ENST00000399676 933 ntAPPRIS P1 BASIC16.84■□□□□ 0.29
CCDC28AQ8IWP9 GUCD1-207ENST00000447813 895 ntTSL 3 BASIC16.84■□□□□ 0.29
CCDC28AQ8IWP9 RBPMS-209ENST00000520161 842 ntTSL 2 BASIC16.84■□□□□ 0.29
CCDC28AQ8IWP9 AL033527.3-201ENST00000566366 1196 ntBASIC16.84■□□□□ 0.29
CCDC28AQ8IWP9 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC28AQ8IWP9 SCNN1D-206ENST00000400928 2731 ntAPPRIS ALT2 TSL 5 BASIC16.84■□□□□ 0.29
CCDC28AQ8IWP9 SMARCC2-203ENST00000394023 4271 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC28AQ8IWP9 CIRBP-216ENST00000588090 1459 ntAPPRIS P3 TSL 3 BASIC16.84■□□□□ 0.29
CCDC28AQ8IWP9 WDR86-207ENST00000621812 1542 ntTSL 5 BASIC16.84■□□□□ 0.29
CCDC28AQ8IWP9 SNX21-212ENST00000491381 1607 ntTSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC28AQ8IWP9 STK19-201ENST00000375331 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC28AQ8IWP9 FRMD4A-203ENST00000357447 6821 ntAPPRIS P2 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC28AQ8IWP9 TMEM204-202ENST00000566264 1938 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC28AQ8IWP9 RASL11B-201ENST00000248706 1995 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC28AQ8IWP9 GTF3C5-203ENST00000372099 1999 ntTSL 5 BASIC16.84■□□□□ 0.29
CCDC28AQ8IWP9 GPR146-201ENST00000397095 1969 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC28AQ8IWP9 DOLPP1-203ENST00000406974 2037 ntTSL 2 BASIC16.84■□□□□ 0.29
CCDC28AQ8IWP9 SCOC-208ENST00000510586 2193 ntAPPRIS ALT1 TSL 5 BASIC16.84■□□□□ 0.29
CCDC28AQ8IWP9 AC125437.2-201ENST00000625180 2167 ntBASIC16.84■□□□□ 0.29
CCDC28AQ8IWP9 KIF13B-206ENST00000524189 8745 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC28AQ8IWP9 PDZD3-202ENST00000355547 2252 ntAPPRIS P1 TSL 1 (best) BASIC16.84■□□□□ 0.29
CCDC28AQ8IWP9 RABGAP1L-204ENST00000357444 2605 ntTSL 1 (best) BASIC16.83■□□□□ 0.29
CCDC28AQ8IWP9 WNT2-201ENST00000265441 2907 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.29
CCDC28AQ8IWP9 MAP4K4-202ENST00000324219 7526 ntTSL 5 BASIC16.83■□□□□ 0.28
CCDC28AQ8IWP9 KPTN-201ENST00000338134 1691 ntAPPRIS P1 TSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC28AQ8IWP9 IFFO1-204ENST00000396840 2677 ntAPPRIS ALT1 TSL 5 BASIC16.83■□□□□ 0.28
CCDC28AQ8IWP9 UQCC3-202ENST00000531323 2288 ntAPPRIS P1 TSL 3 BASIC16.83■□□□□ 0.28
CCDC28AQ8IWP9 AC009053.2-201ENST00000563701 2365 ntBASIC16.83■□□□□ 0.28
CCDC28AQ8IWP9 FUS-210ENST00000568685 1785 ntAPPRIS ALT2 TSL 5 BASIC16.83■□□□□ 0.28
CCDC28AQ8IWP9 DSG2-202ENST00000585206 1081 ntTSL 2 BASIC16.83■□□□□ 0.28
CCDC28AQ8IWP9 SLC1A5-205ENST00000594991 2031 ntTSL 2 BASIC16.83■□□□□ 0.28
CCDC28AQ8IWP9 USF2-207ENST00000595068 1612 ntTSL 5 BASIC16.83■□□□□ 0.28
CCDC28AQ8IWP9 TLK2-201ENST00000326270 3512 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC28AQ8IWP9 JAKMIP1-202ENST00000409021 2975 ntTSL 1 (best) BASIC16.83■□□□□ 0.28
CCDC28AQ8IWP9 MEN1-205ENST00000377316 2868 ntTSL 5 BASIC16.83■□□□□ 0.28
CCDC28AQ8IWP9 ZBTB7C-201ENST00000535628 4818 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC28AQ8IWP9 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC16.82■□□□□ 0.28
CCDC28AQ8IWP9 ASMTL-206ENST00000534940 2048 ntTSL 2 BASIC16.82■□□□□ 0.28
CCDC28AQ8IWP9 AL512408.1-201ENST00000569378 2000 ntBASIC16.82■□□□□ 0.28
CCDC28AQ8IWP9 CARNS1-202ENST00000445895 3971 ntAPPRIS P1 TSL 5 BASIC16.82■□□□□ 0.28
Retrieved 100 of 98,524 protein–RNA pairs in 45.1 ms