Protein–RNA interactions for Protein: P47902

CDX1, Homeobox protein CDX-1, humanhuman

Predicted RBP Predictions only

Length 265 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1P47902 SERTAD3-201ENST00000322354 1734 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDX1P47902 LINC02175-201ENST00000571219 1875 ntTSL 1 (best) BASIC16.41■□□□□ 0.22
CDX1P47902 ZFP92-201ENST00000338647 6105 ntAPPRIS P1 TSL 5 BASIC16.41■□□□□ 0.22
CDX1P47902 TSPAN3-202ENST00000346495 1647 ntTSL 2 BASIC16.41■□□□□ 0.22
CDX1P47902 ARHGDIA-201ENST00000269321 1906 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDX1P47902 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDX1P47902 AMIGO1-202ENST00000369864 5088 ntAPPRIS P1 TSL 1 (best) BASIC16.41■□□□□ 0.22
CDX1P47902 NRL-206ENST00000561028 2103 ntAPPRIS P1 TSL 2 BASIC16.4■□□□□ 0.22
CDX1P47902 TAL1-202ENST00000371884 4642 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDX1P47902 SORCS2-203ENST00000507866 6152 ntAPPRIS P2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDX1P47902 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDX1P47902 CAMKK2-208ENST00000412367 2006 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDX1P47902 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC16.4■□□□□ 0.22
CDX1P47902 USP45-202ENST00000329966 1444 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CDX1P47902 ARID1A-201ENST00000324856 8577 ntAPPRIS P3 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDX1P47902 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDX1P47902 CPED1-202ENST00000340646 1056 ntTSL 5 BASIC16.4■□□□□ 0.22
CDX1P47902 POU5F1P4-201ENST00000413175 1085 ntBASIC16.4■□□□□ 0.22
CDX1P47902 AC044860.1-203ENST00000560811 844 ntTSL 3 BASIC16.4■□□□□ 0.22
CDX1P47902 LOXL1-AS1-208ENST00000565756 885 ntTSL 2 BASIC16.4■□□□□ 0.22
CDX1P47902 LINC01901-201ENST00000585822 1115 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CDX1P47902 SCN1B-203ENST00000595652 814 ntTSL 2 BASIC16.4■□□□□ 0.22
CDX1P47902 POU5F1-209ENST00000638788 369 ntTSL 5 BASIC16.4■□□□□ 0.22
CDX1P47902 KIF26A-202ENST00000423312 5649 ntAPPRIS P2 TSL 5 BASIC16.4■□□□□ 0.22
CDX1P47902 MEIS3-202ENST00000441740 1758 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDX1P47902 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDX1P47902 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDX1P47902 LSR-214ENST00000621372 2274 ntAPPRIS P4 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDX1P47902 CERKL-203ENST00000374969 1330 ntTSL 1 (best) BASIC16.4■□□□□ 0.22
CDX1P47902 ISLR2-208ENST00000565159 2824 ntAPPRIS P1 TSL 3 BASIC16.4■□□□□ 0.22
CDX1P47902 PPP2R5E-204ENST00000555899 2164 ntAPPRIS ALT1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDX1P47902 DHRS2-202ENST00000344777 1678 ntAPPRIS ALT2 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDX1P47902 ASPHD2-201ENST00000215906 3357 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDX1P47902 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC16.4■□□□□ 0.22
CDX1P47902 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.22
CDX1P47902 TDRKH-203ENST00000368824 2824 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CDX1P47902 LEMD2-214ENST00000614475 2883 ntAPPRIS P1 TSL 5 BASIC16.39■□□□□ 0.21
CDX1P47902 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CDX1P47902 MFSD6L-201ENST00000329805 2188 ntAPPRIS P1 BASIC16.39■□□□□ 0.21
CDX1P47902 FAM239A-202ENST00000438107 2155 ntTSL 5 BASIC16.39■□□□□ 0.21
CDX1P47902 GOLPH3-201ENST00000265070 2721 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CDX1P47902 NECTIN1-201ENST00000264025 5840 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CDX1P47902 TAF9-201ENST00000217893 1283 ntAPPRIS P2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CDX1P47902 DTYMK-201ENST00000305784 1232 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CDX1P47902 MFSD11-216ENST00000590393 1141 ntBASIC16.39■□□□□ 0.21
CDX1P47902 MBD3L1-202ENST00000595891 872 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
CDX1P47902 RAP2CP1-201ENST00000605103 478 ntBASIC16.39■□□□□ 0.21
CDX1P47902 EIF3J-201ENST00000261868 2569 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CDX1P47902 NARF-202ENST00000345415 1487 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CDX1P47902 ZNF74-203ENST00000403682 2789 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CDX1P47902 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC16.39■□□□□ 0.21
CDX1P47902 PCDHAC2-203ENST00000615316 3011 ntBASIC16.39■□□□□ 0.21
CDX1P47902 ALKBH7-201ENST00000245812 1332 ntAPPRIS P1 TSL 1 (best) BASIC16.39■□□□□ 0.21
CDX1P47902 NEU4-201ENST00000325935 2288 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CDX1P47902 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC16.39■□□□□ 0.21
CDX1P47902 IKBKG-206ENST00000594239 2299 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
CDX1P47902 MEIS3-212ENST00000561293 1918 ntAPPRIS P3 TSL 1 (best) BASIC16.39■□□□□ 0.21
CDX1P47902 MAFF-202ENST00000407965 2325 ntAPPRIS P1 TSL 2 BASIC16.39■□□□□ 0.21
CDX1P47902 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
CDX1P47902 CITED2-202ENST00000536159 1797 ntAPPRIS P1 TSL 3 BASIC16.38■□□□□ 0.21
CDX1P47902 CITED2-203ENST00000537332 1780 ntTSL 3 BASIC16.38■□□□□ 0.21
CDX1P47902 AC003102.1-202ENST00000563394 1796 ntBASIC16.38■□□□□ 0.21
CDX1P47902 RABL2B-206ENST00000395598 2169 ntAPPRIS P3 TSL 1 (best) BASIC16.38■□□□□ 0.21
CDX1P47902 ADAP1-216ENST00000539900 2178 ntTSL 2 BASIC16.38■□□□□ 0.21
CDX1P47902 AC044802.1-201ENST00000501143 2894 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CDX1P47902 TMSB15B-201ENST00000419165 1666 ntAPPRIS P1 TSL 2 BASIC16.38■□□□□ 0.21
CDX1P47902 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CDX1P47902 CEACAM4-201ENST00000221954 1205 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CDX1P47902 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC16.38■□□□□ 0.21
CDX1P47902 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CDX1P47902 AC037459.4-201ENST00000517384 585 ntTSL 4 BASIC16.38■□□□□ 0.21
CDX1P47902 HTATIP2-208ENST00000532505 595 ntTSL 2 BASIC16.38■□□□□ 0.21
CDX1P47902 CEACAM4-203ENST00000600925 899 ntAPPRIS ALT2 TSL 2 BASIC16.38■□□□□ 0.21
CDX1P47902 AC231657.2-201ENST00000624556 255 ntBASIC16.38■□□□□ 0.21
CDX1P47902 ZNF324B-202ENST00000545523 2368 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CDX1P47902 PSPC1-201ENST00000338910 2407 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CDX1P47902 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CDX1P47902 MARK1-205ENST00000611084 5321 ntAPPRIS ALT1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CDX1P47902 RIPPLY3-201ENST00000329553 2235 ntAPPRIS P1 TSL 1 (best) BASIC16.38■□□□□ 0.21
CDX1P47902 SPAG16-204ENST00000413312 2258 ntTSL 5 BASIC16.38■□□□□ 0.21
CDX1P47902 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC16.38■□□□□ 0.21
CDX1P47902 SLC6A11-202ENST00000454147 2794 ntTSL 1 (best) BASIC16.38■□□□□ 0.21
CDX1P47902 RHNO1-204ENST00000489288 1870 ntAPPRIS P3 TSL 1 (best) BASIC16.37■□□□□ 0.21
CDX1P47902 TULP1-201ENST00000229771 2162 ntAPPRIS P2 TSL 1 (best) BASIC16.37■□□□□ 0.21
CDX1P47902 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CDX1P47902 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CDX1P47902 GPR137-201ENST00000313074 1485 ntTSL 5 BASIC16.37■□□□□ 0.21
CDX1P47902 GPR137-203ENST00000411458 1495 ntTSL 2 BASIC16.37■□□□□ 0.21
CDX1P47902 LGI2-201ENST00000382114 6428 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CDX1P47902 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CDX1P47902 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CDX1P47902 COX5B-201ENST00000258424 712 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CDX1P47902 KHDC3L-201ENST00000370367 1018 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CDX1P47902 COL19A1-203ENST00000478620 589 ntTSL 1 (best) BASIC16.37■□□□□ 0.21
CDX1P47902 Z97986.1-201ENST00000565879 476 ntTSL 5 BASIC16.37■□□□□ 0.21
CDX1P47902 TMEM151A-201ENST00000327259 2562 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CDX1P47902 RBM6-204ENST00000422955 2324 ntTSL 2 BASIC16.37■□□□□ 0.21
CDX1P47902 SEPT5-210ENST00000455784 2070 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
CDX1P47902 ACSL1-205ENST00000504900 1583 ntTSL 5 BASIC16.37■□□□□ 0.21
CDX1P47902 IL1R1-205ENST00000410023 5143 ntAPPRIS P1 TSL 1 (best) BASIC16.37■□□□□ 0.21
Retrieved 100 of 98,524 protein–RNA pairs in 38.2 ms