Protein–RNA interactions for Protein: P23560

BDNF, Brain-derived neurotrophic factor, humanhuman

Predictions only

Length 247 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
BDNFP23560 CPNE9-205ENST00000613455 1742 ntTSL 5 BASIC21.35■■□□□ 1.01
BDNFP23560 PABPC1L2B-201ENST00000373521 2197 ntAPPRIS P1 BASIC21.34■■□□□ 1.01
BDNFP23560 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
BDNFP23560 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC21.34■■□□□ 1.01
BDNFP23560 WDR4-202ENST00000398208 2122 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
BDNFP23560 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC21.34■■□□□ 1.01
BDNFP23560 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC21.34■■□□□ 1.01
BDNFP23560 C11orf86-201ENST00000308963 1187 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
BDNFP23560 TMEM240-202ENST00000425828 717 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
BDNFP23560 AC007405.3-201ENST00000429172 561 ntTSL 3 BASIC21.34■■□□□ 1.01
BDNFP23560 AC073316.3-201ENST00000437354 982 ntTSL 3 BASIC21.34■■□□□ 1.01
BDNFP23560 GCC2-AS1-202ENST00000440975 574 ntTSL 4 BASIC21.34■■□□□ 1.01
BDNFP23560 COX6C-208ENST00000522940 694 ntAPPRIS P1 TSL 3 BASIC21.34■■□□□ 1.01
BDNFP23560 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC21.34■■□□□ 1.01
BDNFP23560 SLC35E4-202ENST00000406566 2081 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
BDNFP23560 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
BDNFP23560 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
BDNFP23560 SUN1-220ENST00000457378 1309 ntTSL 1 (best) BASIC21.33■■□□□ 1.01
BDNFP23560 MYCN-201ENST00000281043 2602 ntAPPRIS P1 TSL 5 BASIC21.33■■□□□ 1.01
BDNFP23560 EFS-203ENST00000429593 2610 ntTSL 2 BASIC21.33■■□□□ 1.01
BDNFP23560 NFS1-214ENST00000541387 1436 ntTSL 2 BASIC21.33■■□□□ 1.01
BDNFP23560 ZDHHC12-202ENST00000372667 1187 ntTSL 5 BASIC21.33■■□□□ 1.01
BDNFP23560 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1.01
BDNFP23560 METTL21A-207ENST00000442521 1003 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
BDNFP23560 MAGI2-AS3-211ENST00000451809 707 ntTSL 3 BASIC21.33■■□□□ 1.01
BDNFP23560 COX4I1-202ENST00000561569 716 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
BDNFP23560 RPL17-204ENST00000579248 790 ntAPPRIS P1 TSL 2 BASIC21.33■■□□□ 1.01
BDNFP23560 KLF2-202ENST00000592003 564 ntTSL 3 BASIC21.33■■□□□ 1.01
BDNFP23560 PTGIR-202ENST00000594275 699 ntTSL 3 BASIC21.33■■□□□ 1.01
BDNFP23560 PTGIR-206ENST00000598865 724 ntTSL 3 BASIC21.33■■□□□ 1.01
BDNFP23560 PTCRA-204ENST00000616441 1125 ntAPPRIS ALT2 TSL 2 BASIC21.33■■□□□ 1.01
BDNFP23560 C1QL4-201ENST00000334221 2071 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
BDNFP23560 B4GALT2-204ENST00000434555 1923 ntTSL 1 (best) BASIC21.33■■□□□ 1
BDNFP23560 TMED4-203ENST00000457408 2322 ntAPPRIS P1 TSL 1 (best) BASIC21.33■■□□□ 1
BDNFP23560 PARD3-207ENST00000374788 5996 ntAPPRIS ALT1 TSL 1 (best) BASIC21.33■■□□□ 1
BDNFP23560 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC21.33■■□□□ 1
BDNFP23560 TACO1-201ENST00000258975 1469 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
BDNFP23560 HAUS4-202ENST00000342454 1474 ntTSL 1 (best) BASIC21.32■■□□□ 1
BDNFP23560 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC21.32■■□□□ 1
BDNFP23560 BID-203ENST00000399765 1879 ntTSL 2 BASIC21.32■■□□□ 1
BDNFP23560 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
BDNFP23560 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC21.32■■□□□ 1
BDNFP23560 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
BDNFP23560 C6orf48-205ENST00000375640 1053 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
BDNFP23560 AL390719.1-204ENST00000412397 1219 ntBASIC21.32■■□□□ 1
BDNFP23560 AC098590.1-201ENST00000468126 897 ntBASIC21.32■■□□□ 1
BDNFP23560 SEC23A-AS1-201ENST00000557350 500 ntTSL 3 BASIC21.32■■□□□ 1
BDNFP23560 MMD2-204ENST00000612910 778 ntTSL 5 BASIC21.32■■□□□ 1
BDNFP23560 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC21.32■■□□□ 1
BDNFP23560 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
BDNFP23560 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
BDNFP23560 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC21.32■■□□□ 1
BDNFP23560 DRAM2-201ENST00000286692 2246 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
BDNFP23560 NFS1-204ENST00000397425 1956 ntTSL 5 BASIC21.32■■□□□ 1
BDNFP23560 CTGF-201ENST00000367976 2339 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
BDNFP23560 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC21.32■■□□□ 1
BDNFP23560 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC21.32■■□□□ 1
BDNFP23560 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
BDNFP23560 BRD9-202ENST00000467963 2156 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
BDNFP23560 LTBP3-201ENST00000301873 4443 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
BDNFP23560 KEAP1-202ENST00000393623 2648 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
BDNFP23560 CIZ1-203ENST00000357558 2907 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
BDNFP23560 FAM193B-217ENST00000514747 2913 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
BDNFP23560 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC21.31■■□□□ 1
BDNFP23560 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC21.31■■□□□ 1
BDNFP23560 CCDC74B-203ENST00000409128 789 ntAPPRIS ALT2 TSL 2 BASIC21.31■■□□□ 1
BDNFP23560 KRT17P3-201ENST00000420566 1262 ntBASIC21.31■■□□□ 1
BDNFP23560 LINC01881-205ENST00000456398 1235 ntTSL 5 BASIC21.31■■□□□ 1
BDNFP23560 C14orf144-202ENST00000555282 854 ntTSL 3 BASIC21.31■■□□□ 1
BDNFP23560 AC127496.6-201ENST00000576215 338 ntTSL 3 BASIC21.31■■□□□ 1
BDNFP23560 AC233263.1-201ENST00000578059 224 ntBASIC21.31■■□□□ 1
BDNFP23560 BABAM1-213ENST00000601043 1366 ntAPPRIS P3 TSL 2 BASIC21.31■■□□□ 1
BDNFP23560 TGFBR1-202ENST00000374994 6516 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
BDNFP23560 FASTK-201ENST00000297532 1827 ntAPPRIS P1 TSL 1 (best) BASIC21.31■■□□□ 1
BDNFP23560 PTPRJ-208ENST00000615445 4773 ntAPPRIS ALT2 TSL 5 BASIC21.31■■□□□ 1
BDNFP23560 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC21.31■■□□□ 1
BDNFP23560 CTU2-210ENST00000567949 1905 ntAPPRIS ALT2 TSL 1 (best) BASIC21.31■■□□□ 1
BDNFP23560 NDUFV3-202ENST00000354250 1575 ntTSL 1 (best) BASIC21.31■■□□□ 1
BDNFP23560 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC21.31■■□□□ 1
BDNFP23560 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC21.31■■□□□ 1
BDNFP23560 DBNL-220ENST00000494774 2117 ntAPPRIS P4 TSL 1 (best) BASIC21.31■■□□□ 1
BDNFP23560 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC21.3■■□□□ 1
BDNFP23560 SDK1-201ENST00000389531 7606 ntAPPRIS ALT2 TSL 5 BASIC21.3■■□□□ 1
BDNFP23560 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC21.3■■□□□ 1
BDNFP23560 GCHFR-201ENST00000260447 777 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
BDNFP23560 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC21.3■■□□□ 1
BDNFP23560 CAVIN3-201ENST00000303927 1174 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
BDNFP23560 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
BDNFP23560 FAM167B-201ENST00000373582 936 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
BDNFP23560 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC21.3■■□□□ 1
BDNFP23560 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC21.3■■□□□ 1
BDNFP23560 KCNK17-201ENST00000373231 1658 ntAPPRIS P3 TSL 1 (best) BASIC21.3■■□□□ 1
BDNFP23560 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC21.3■■□□□ 1
BDNFP23560 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC21.3■■□□□ 1
BDNFP23560 RTP5-201ENST00000343216 2296 ntAPPRIS P1 TSL 1 (best) BASIC21.3■■□□□ 1
BDNFP23560 FAM170B-201ENST00000311787 1401 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
BDNFP23560 DMRTB1-201ENST00000371445 1910 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
BDNFP23560 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC21.29■■□□□ 1
BDNFP23560 LTK-201ENST00000263800 3046 ntAPPRIS P4 TSL 1 (best) BASIC21.29■■□□□ 1
BDNFP23560 TRMT2A-204ENST00000439169 2473 ntTSL 5 BASIC21.29■■□□□ 1
Retrieved 100 of 98,524 protein–RNA pairs in 34.4 ms