Protein–RNA interactions for Protein: P22223

CDH3, Cadherin-3, humanhuman

Predictions only

Length 829 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3P22223 NR2F2-201ENST00000394166 5275 ntAPPRIS P1 TSL 1 (best) BASIC19.75■□□□□ 0.75
CDH3P22223 DISC1-202ENST00000317586 2636 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CDH3P22223 NAPEPLD-208ENST00000427257 1822 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
CDH3P22223 FUZ-212ENST00000528094 1479 ntTSL 2 BASIC19.74■□□□□ 0.75
CDH3P22223 GPR108-201ENST00000264080 2057 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CDH3P22223 MCAT-201ENST00000290429 2056 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CDH3P22223 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CDH3P22223 CELF2-211ENST00000632065 1952 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CDH3P22223 CHST8-202ENST00000434302 2225 ntAPPRIS P1 TSL 2 BASIC19.74■□□□□ 0.75
CDH3P22223 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CDH3P22223 FBXO27-202ENST00000509137 2130 ntAPPRIS P2 TSL 1 (best) BASIC19.74■□□□□ 0.75
CDH3P22223 RNA5SP413-201ENST00000516373 109 ntBASIC19.74■□□□□ 0.75
CDH3P22223 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC19.74■□□□□ 0.75
CDH3P22223 ANAPC11-208ENST00000572851 686 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CDH3P22223 ANAPC11-212ENST00000577425 603 ntTSL 3 BASIC19.74■□□□□ 0.75
CDH3P22223 SCYL2-201ENST00000360820 5779 ntAPPRIS P1 TSL 1 (best) BASIC19.74■□□□□ 0.75
CDH3P22223 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC19.74■□□□□ 0.75
CDH3P22223 MSANTD1-204ENST00000510580 2039 ntTSL 5 BASIC19.74■□□□□ 0.75
CDH3P22223 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC19.74■□□□□ 0.75
CDH3P22223 QKI-201ENST00000275262 6964 ntTSL 1 (best) BASIC19.74■□□□□ 0.75
CDH3P22223 SOX11-201ENST00000322002 8719 ntAPPRIS P1 BASIC19.74■□□□□ 0.75
CDH3P22223 CPXM2-204ENST00000615851 2512 ntTSL 5 BASIC19.73■□□□□ 0.75
CDH3P22223 BOK-201ENST00000318407 2657 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CDH3P22223 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC19.73■□□□□ 0.75
CDH3P22223 IKBIP-203ENST00000393042 1368 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CDH3P22223 GCK-205ENST00000437084 1385 ntTSL 5 BASIC19.73■□□□□ 0.75
CDH3P22223 SRRM3-204ENST00000611745 3612 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
CDH3P22223 HOXA11-AS-204ENST00000522674 1549 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CDH3P22223 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CDH3P22223 PSPN-201ENST00000245810 471 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CDH3P22223 CLDN3-201ENST00000395145 1274 ntAPPRIS P1 BASIC19.73■□□□□ 0.75
CDH3P22223 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC19.73■□□□□ 0.75
CDH3P22223 AC006252.1-201ENST00000483834 1101 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CDH3P22223 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC19.73■□□□□ 0.75
CDH3P22223 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CDH3P22223 AC083880.1-201ENST00000608266 535 ntBASIC19.73■□□□□ 0.75
CDH3P22223 MYC-209ENST00000641252 345 ntBASIC19.73■□□□□ 0.75
CDH3P22223 PAQR6-212ENST00000540423 1729 ntTSL 3 BASIC19.73■□□□□ 0.75
CDH3P22223 TPTEP1-205ENST00000558085 1738 ntTSL 2 BASIC19.73■□□□□ 0.75
CDH3P22223 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CDH3P22223 TADA2B-204ENST00000512388 1343 ntTSL 5 BASIC19.73■□□□□ 0.75
CDH3P22223 RHBDL1-202ENST00000352681 1463 ntAPPRIS P1 TSL 1 (best) BASIC19.73■□□□□ 0.75
CDH3P22223 AC008687.4-201ENST00000637680 1485 ntAPPRIS P1 TSL 5 BASIC19.73■□□□□ 0.75
CDH3P22223 LINC00094-201ENST00000432807 2300 ntAPPRIS ALT2 TSL 2 BASIC19.73■□□□□ 0.75
CDH3P22223 NEURL4-203ENST00000570460 4890 ntAPPRIS ALT2 TSL 5 BASIC19.73■□□□□ 0.75
CDH3P22223 NAAA-201ENST00000286733 1900 ntAPPRIS P2 TSL 5 BASIC19.72■□□□□ 0.75
CDH3P22223 C14orf79-207ENST00000550614 1912 ntAPPRIS ALT2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CDH3P22223 CPNE9-203ENST00000383832 2068 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
CDH3P22223 MADCAM1-201ENST00000215637 1572 ntAPPRIS P4 TSL 1 (best) BASIC19.72■□□□□ 0.75
CDH3P22223 GPX1-202ENST00000419783 1146 ntAPPRIS P2 TSL 1 (best) BASIC19.72■□□□□ 0.75
CDH3P22223 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC19.72■□□□□ 0.75
CDH3P22223 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC19.72■□□□□ 0.75
CDH3P22223 AC011611.3-201ENST00000552367 569 ntTSL 4 BASIC19.72■□□□□ 0.75
CDH3P22223 AC003102.1-201ENST00000588279 569 ntTSL 4 BASIC19.72■□□□□ 0.75
CDH3P22223 TEAD2-208ENST00000598810 2191 ntTSL 1 (best) BASIC19.72■□□□□ 0.75
CDH3P22223 AC005229.4-201ENST00000610085 2198 ntBASIC19.72■□□□□ 0.75
CDH3P22223 TBCB-214ENST00000629269 413 ntTSL 5 BASIC19.72■□□□□ 0.75
CDH3P22223 GNB3-201ENST00000229264 1923 ntAPPRIS P3 TSL 5 BASIC19.72■□□□□ 0.75
CDH3P22223 AL035252.2-201ENST00000454676 3168 ntTSL 2 BASIC19.72■□□□□ 0.75
CDH3P22223 LEF1-203ENST00000438313 1488 ntAPPRIS ALT1 TSL 1 (best) BASIC19.72■□□□□ 0.75
CDH3P22223 EPHX3-204ENST00000602233 1805 ntAPPRIS P1 TSL 5 BASIC19.72■□□□□ 0.75
CDH3P22223 CYB5R2-212ENST00000533558 1658 ntAPPRIS P1 TSL 2 BASIC19.71■□□□□ 0.75
CDH3P22223 PITX3-201ENST00000370002 1391 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CDH3P22223 DGKZ-214ENST00000527911 3337 ntAPPRIS ALT2 TSL 1 (best) BASIC19.71■□□□□ 0.75
CDH3P22223 RNF38-204ENST00000357058 5254 ntAPPRIS P1 TSL 5 BASIC19.71■□□□□ 0.75
CDH3P22223 RASGEF1C-201ENST00000361132 2243 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CDH3P22223 LPCAT4-201ENST00000314891 2262 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CDH3P22223 PRDM8-202ENST00000415738 3124 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CDH3P22223 AL049796.1-201ENST00000565336 1766 ntBASIC19.71■□□□□ 0.75
CDH3P22223 GATA6-AS1-202ENST00000583490 1788 ntTSL 2 BASIC19.71■□□□□ 0.75
CDH3P22223 LHX6-201ENST00000340587 3457 ntTSL 1 (best) BASIC19.71■□□□□ 0.75
CDH3P22223 ETHE1-201ENST00000292147 963 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CDH3P22223 GUK1-209ENST00000366730 937 ntAPPRIS P3 TSL 3 BASIC19.71■□□□□ 0.75
CDH3P22223 CSF1-205ENST00000420111 1083 ntTSL 5 BASIC19.71■□□□□ 0.75
CDH3P22223 PGM5P4-201ENST00000421970 445 ntBASIC19.71■□□□□ 0.75
CDH3P22223 HES2-205ENST00000487437 968 ntTSL 3 BASIC19.71■□□□□ 0.75
CDH3P22223 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC19.71■□□□□ 0.75
CDH3P22223 AC092143.2-201ENST00000554623 985 ntTSL 3 BASIC19.71■□□□□ 0.75
CDH3P22223 AC090527.2-201ENST00000564080 1060 ntAPPRIS P1 TSL 3 BASIC19.71■□□□□ 0.75
CDH3P22223 DCTPP1-205ENST00000568973 878 ntTSL 2 BASIC19.71■□□□□ 0.75
CDH3P22223 AC011484.1-201ENST00000377652 1995 ntBASIC19.71■□□□□ 0.75
CDH3P22223 BORCS8-MEF2B-202ENST00000444486 1492 ntAPPRIS P2 TSL 2 BASIC19.71■□□□□ 0.75
CDH3P22223 MAST1-208ENST00000591495 1496 ntTSL 5 BASIC19.71■□□□□ 0.75
CDH3P22223 EGLN2-202ENST00000406058 2150 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CDH3P22223 NAPSA-201ENST00000253719 1548 ntAPPRIS P1 TSL 1 (best) BASIC19.71■□□□□ 0.75
CDH3P22223 TRMT2A-201ENST00000252136 2964 ntAPPRIS P3 TSL 1 (best) BASIC19.71■□□□□ 0.75
CDH3P22223 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC19.71■□□□□ 0.75
CDH3P22223 AL157384.1-201ENST00000445995 2473 ntBASIC19.7■□□□□ 0.74
CDH3P22223 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC19.7■□□□□ 0.74
CDH3P22223 FGFR2-224ENST00000613048 4369 ntTSL 5 BASIC19.7■□□□□ 0.74
CDH3P22223 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC19.7■□□□□ 0.74
CDH3P22223 PKIB-206ENST00000392490 1811 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CDH3P22223 LIPT2-201ENST00000310109 1018 ntAPPRIS P1 TSL 2 BASIC19.7■□□□□ 0.74
CDH3P22223 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC19.7■□□□□ 0.74
CDH3P22223 IPO13-201ENST00000372339 1201 ntTSL 2 BASIC19.7■□□□□ 0.74
CDH3P22223 CHPF-202ENST00000373891 1079 ntTSL 2 BASIC19.7■□□□□ 0.74
CDH3P22223 HAGLR-207ENST00000452365 661 ntTSL 4 BASIC19.7■□□□□ 0.74
CDH3P22223 OR10C1-203ENST00000444197 1672 ntAPPRIS P1 BASIC19.7■□□□□ 0.74
CDH3P22223 MSANTD1-203ENST00000507492 2289 ntAPPRIS ALT2 TSL 1 (best) BASIC19.7■□□□□ 0.74
CDH3P22223 RASSF1-203ENST00000359365 1923 ntAPPRIS ALT1 TSL 1 (best) BASIC19.7■□□□□ 0.74
Retrieved 100 of 98,524 protein–RNA pairs in 30.5 ms