Protein–RNA interactions for Protein: P20849

COL9A1, Collagen alpha-1(IX) chain, humanhuman

Predictions only

Length 921 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A1P20849 GMDS-202ENST00000380815 1752 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL9A1P20849 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL9A1P20849 AC007322.3-201ENST00000426526 701 ntBASIC20.93■□□□□ 0.94
COL9A1P20849 ACP6-203ENST00000487562 1258 ntTSL 5 BASIC20.93■□□□□ 0.94
COL9A1P20849 AC008443.1-203ENST00000505151 886 ntTSL 2 BASIC20.93■□□□□ 0.94
COL9A1P20849 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC20.93■□□□□ 0.94
COL9A1P20849 CCNG1-208ENST00000510664 994 ntTSL 5 BASIC20.93■□□□□ 0.94
COL9A1P20849 AC008878.4-201ENST00000602083 293 ntTSL 5 BASIC20.93■□□□□ 0.94
COL9A1P20849 AC120498.8-201ENST00000614275 531 ntBASIC20.93■□□□□ 0.94
COL9A1P20849 TARBP1-201ENST00000040877 5130 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL9A1P20849 NXN-202ENST00000537628 1340 ntTSL 3 BASIC20.93■□□□□ 0.94
COL9A1P20849 PPP4C-202ENST00000561610 1333 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL9A1P20849 PNKP-201ENST00000322344 2041 ntAPPRIS P1 TSL 1 (best) BASIC20.93■□□□□ 0.94
COL9A1P20849 MXRA8-203ENST00000445648 2001 ntTSL 2 BASIC20.93■□□□□ 0.94
COL9A1P20849 SLC52A2-211ENST00000532887 2147 ntAPPRIS P1 TSL 5 BASIC20.93■□□□□ 0.94
COL9A1P20849 PLEKHA8-208ENST00000622102 2140 ntTSL 5 BASIC20.93■□□□□ 0.94
COL9A1P20849 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC20.93■□□□□ 0.94
COL9A1P20849 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC20.92■□□□□ 0.94
COL9A1P20849 ERGIC1-202ENST00000393784 2881 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL9A1P20849 GAL3ST3-201ENST00000312006 2133 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL9A1P20849 ANKHD1-205ENST00000394723 2135 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
COL9A1P20849 TERT-206ENST00000508104 2486 ntTSL 5 BASIC20.92■□□□□ 0.94
COL9A1P20849 RPLP0-201ENST00000228306 1257 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL9A1P20849 TMEM234-201ENST00000309777 1082 ntAPPRIS P1 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL9A1P20849 LCE3C-201ENST00000333881 425 ntAPPRIS P1 BASIC20.92■□□□□ 0.94
COL9A1P20849 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
COL9A1P20849 Metazoa_SRP.28-201ENST00000366402 260 ntBASIC20.92■□□□□ 0.94
COL9A1P20849 SAPCD2P1-201ENST00000395413 1184 ntBASIC20.92■□□□□ 0.94
COL9A1P20849 ABCC5-211ENST00000446941 883 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
COL9A1P20849 AL391069.3-201ENST00000455503 618 ntTSL 2 BASIC20.92■□□□□ 0.94
COL9A1P20849 NUDT16P1-203ENST00000513809 620 ntBASIC20.92■□□□□ 0.94
COL9A1P20849 FITM1-202ENST00000559294 800 ntBASIC20.92■□□□□ 0.94
COL9A1P20849 CR769767.2-201ENST00000622735 460 ntBASIC20.92■□□□□ 0.94
COL9A1P20849 HTR7P1-201ENST00000538670 1336 ntBASIC20.92■□□□□ 0.94
COL9A1P20849 IER3-202ENST00000376377 1350 ntBASIC20.92■□□□□ 0.94
COL9A1P20849 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
COL9A1P20849 ROPN1-209ENST00000495093 1376 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
COL9A1P20849 B4GALT1-202ENST00000535206 1535 ntTSL 1 (best) BASIC20.92■□□□□ 0.94
COL9A1P20849 HNRNPM-202ENST00000348943 2568 ntAPPRIS ALT2 TSL 1 (best) BASIC20.92■□□□□ 0.94
COL9A1P20849 RPP25L-201ENST00000297613 1092 ntAPPRIS P1 TSL 2 BASIC20.91■□□□□ 0.94
COL9A1P20849 ZNF354A-201ENST00000335815 2484 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL9A1P20849 RBP4-201ENST00000371464 1068 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL9A1P20849 KRT18P68-201ENST00000392293 1000 ntBASIC20.91■□□□□ 0.94
COL9A1P20849 PQLC2-203ENST00000400548 1548 ntTSL 1 (best) BASIC20.91■□□□□ 0.94
COL9A1P20849 SGO1-208ENST00000437051 1187 ntAPPRIS ALT2 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL9A1P20849 GCK-205ENST00000437084 1385 ntTSL 5 BASIC20.91■□□□□ 0.94
COL9A1P20849 HOXA11-AS-205ENST00000522863 1723 ntTSL 5 BASIC20.91■□□□□ 0.94
COL9A1P20849 CD320-202ENST00000537716 1119 ntTSL 2 BASIC20.91■□□□□ 0.94
COL9A1P20849 CCDC106-207ENST00000591578 1592 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL9A1P20849 ZIM2-201ENST00000593711 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.91■□□□□ 0.94
COL9A1P20849 NCK2-201ENST00000233154 2683 ntAPPRIS P1 TSL 5 BASIC20.91■□□□□ 0.94
COL9A1P20849 DDIT4-201ENST00000307365 1748 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL9A1P20849 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
COL9A1P20849 DPF1-201ENST00000355526 1632 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
COL9A1P20849 CAMKMT-201ENST00000378494 1495 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL9A1P20849 LHX2-201ENST00000373615 2554 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL9A1P20849 LCE2B-201ENST00000368780 612 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL9A1P20849 SPATA25-201ENST00000372519 757 ntAPPRIS P1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL9A1P20849 FAM8A6P-201ENST00000407496 1135 ntBASIC20.9■□□□□ 0.94
COL9A1P20849 IFT27-205ENST00000433985 1095 ntAPPRIS ALT1 TSL 1 (best) BASIC20.9■□□□□ 0.94
COL9A1P20849 AC027682.5-201ENST00000567122 530 ntTSL 3 BASIC20.9■□□□□ 0.94
COL9A1P20849 ATP8A1-207ENST00000510289 2238 ntTSL 1 (best) BASIC20.9■□□□□ 0.94
COL9A1P20849 DMRT2-209ENST00000635183 2190 ntTSL 5 BASIC20.9■□□□□ 0.94
COL9A1P20849 AC005906.2-202ENST00000638821 2168 ntTSL 5 BASIC20.9■□□□□ 0.94
COL9A1P20849 MXI1-201ENST00000239007 2424 ntAPPRIS ALT1 TSL 1 (best) BASIC20.89■□□□□ 0.94
COL9A1P20849 LINC00605-201ENST00000514902 1558 ntTSL 1 (best) BASIC20.89■□□□□ 0.94
COL9A1P20849 FAM66E-201ENST00000529252 1433 ntTSL 2 BASIC20.89■□□□□ 0.94
COL9A1P20849 TPST1-201ENST00000304842 2116 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.94
COL9A1P20849 SLC12A5-AS1-202ENST00000535913 1957 ntTSL 2 BASIC20.89■□□□□ 0.93
COL9A1P20849 GML-201ENST00000220940 723 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL9A1P20849 ZNF584-202ENST00000322834 1042 ntTSL 2 BASIC20.89■□□□□ 0.93
COL9A1P20849 TPSAB1-201ENST00000338844 1175 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL9A1P20849 AL022342.1-201ENST00000400363 863 ntBASIC20.89■□□□□ 0.93
COL9A1P20849 ALG5-202ENST00000443765 1119 ntTSL 2 BASIC20.89■□□□□ 0.93
COL9A1P20849 AC135586.2-201ENST00000537262 567 ntAPPRIS P1 TSL 4 BASIC20.89■□□□□ 0.93
COL9A1P20849 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC20.89■□□□□ 0.93
COL9A1P20849 GCH1-206ENST00000543643 1897 ntTSL 1 (best) BASIC20.89■□□□□ 0.93
COL9A1P20849 CPE-201ENST00000402744 2421 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL9A1P20849 PANK2-201ENST00000316562 2280 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL9A1P20849 RILPL1-205ENST00000636882 2258 ntTSL 5 BASIC20.89■□□□□ 0.93
COL9A1P20849 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL9A1P20849 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.89■□□□□ 0.93
COL9A1P20849 GALC-202ENST00000393568 2054 ntTSL 2 BASIC20.89■□□□□ 0.93
COL9A1P20849 NPAS1-202ENST00000449844 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL9A1P20849 CYHR1-202ENST00000403000 1477 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
COL9A1P20849 IRX4-207ENST00000613726 2403 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
COL9A1P20849 VRK2-201ENST00000340157 1888 ntAPPRIS P3 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL9A1P20849 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL9A1P20849 RHBDD2-201ENST00000006777 1802 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL9A1P20849 TPM4-201ENST00000300933 2666 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
COL9A1P20849 ESRRA-203ENST00000406310 2218 ntAPPRIS ALT1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL9A1P20849 NDUFB1-201ENST00000329559 528 ntTSL 1 (best) BASIC20.88■□□□□ 0.93
COL9A1P20849 LCE3D-201ENST00000368787 613 ntAPPRIS P1 TSL 1 (best) BASIC20.88■□□□□ 0.93
COL9A1P20849 PPT2-248ENST00000395523 2111 ntAPPRIS ALT2 TSL 5 BASIC20.88■□□□□ 0.93
COL9A1P20849 METTL21A-204ENST00000425132 869 ntTSL 2 BASIC20.88■□□□□ 0.93
COL9A1P20849 AL353807.1-201ENST00000427475 662 ntBASIC20.88■□□□□ 0.93
COL9A1P20849 AC007731.5-201ENST00000429594 644 ntAPPRIS P1 TSL 5 BASIC20.88■□□□□ 0.93
COL9A1P20849 LMF1-202ENST00000543238 2103 ntTSL 2 BASIC20.88■□□□□ 0.93
COL9A1P20849 WT1-211ENST00000639907 1545 ntAPPRIS ALT2 TSL 2 BASIC20.88■□□□□ 0.93
COL9A1P20849 CYP21A1P-202ENST00000354927 1481 ntBASIC20.88■□□□□ 0.93
Retrieved 100 of 98,524 protein–RNA pairs in 26.2 ms