Protein–RNA interactions for Protein: P17096

HMGA1, High mobility group protein HMG-I/HMG-Y, humanhuman

Known RBP Predictions only

Length 107 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HMGA1P17096 TGIF1-219ENST00000551541 990 ntTSL 2 BASIC21.1■□□□□ 0.97
HMGA1P17096 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC21.1■□□□□ 0.97
HMGA1P17096 TMEM191B-203ENST00000613597 366 ntAPPRIS ALT2 TSL 5 BASIC21.1■□□□□ 0.97
HMGA1P17096 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC21.1■□□□□ 0.97
HMGA1P17096 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
HMGA1P17096 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC21.1■□□□□ 0.97
HMGA1P17096 SIN3B-209ENST00000596802 2556 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
HMGA1P17096 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC21.09■□□□□ 0.97
HMGA1P17096 SEC11A-201ENST00000268220 1656 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HMGA1P17096 PDLIM2-207ENST00000409417 1487 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HMGA1P17096 P2RX5-201ENST00000225328 2309 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
HMGA1P17096 WDR45-207ENST00000376372 1639 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
HMGA1P17096 TSTD1-201ENST00000318289 626 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
HMGA1P17096 PLPP7-201ENST00000372261 972 ntTSL 2 BASIC21.09■□□□□ 0.97
HMGA1P17096 AL049780.2-201ENST00000556236 367 ntTSL 3 BASIC21.09■□□□□ 0.97
HMGA1P17096 KLHDC4-204ENST00000353170 1663 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
HMGA1P17096 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
HMGA1P17096 NKAIN4-201ENST00000370307 793 ntTSL 5 BASIC21.08■□□□□ 0.97
HMGA1P17096 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC21.08■□□□□ 0.97
HMGA1P17096 SMIM19-201ENST00000414154 793 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
HMGA1P17096 AC239809.2-201ENST00000415381 517 ntBASIC21.08■□□□□ 0.97
HMGA1P17096 AL365295.1-202ENST00000456100 562 ntTSL 4 BASIC21.08■□□□□ 0.97
HMGA1P17096 GLYCTK-205ENST00000473032 935 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
HMGA1P17096 RBCK1-213ENST00000475269 1200 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
HMGA1P17096 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC21.08■□□□□ 0.97
HMGA1P17096 CA3-AS1-201ENST00000517697 559 ntTSL 4 BASIC21.08■□□□□ 0.97
HMGA1P17096 TK2-204ENST00000525974 1178 ntTSL 2 BASIC21.08■□□□□ 0.97
HMGA1P17096 SOCS2-210ENST00000551556 1716 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.97
HMGA1P17096 ARMC4P1-202ENST00000576034 643 ntTSL 2 BASIC21.08■□□□□ 0.97
HMGA1P17096 WDR25-201ENST00000335290 2123 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
HMGA1P17096 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
HMGA1P17096 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC21.08■□□□□ 0.96
HMGA1P17096 NPAS3-201ENST00000346562 5847 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.96
HMGA1P17096 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC21.08■□□□□ 0.96
HMGA1P17096 FAM129C-207ENST00000599124 1918 ntAPPRIS ALT2 TSL 1 (best) BASIC21.08■□□□□ 0.96
HMGA1P17096 AC124283.5-201ENST00000624661 1809 ntBASIC21.07■□□□□ 0.96
HMGA1P17096 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
HMGA1P17096 SULT1A1-202ENST00000350842 1282 ntTSL 3 BASIC21.07■□□□□ 0.96
HMGA1P17096 MIR718-201ENST00000390190 70 ntBASIC21.07■□□□□ 0.96
HMGA1P17096 KRASP1-201ENST00000407852 552 ntBASIC21.07■□□□□ 0.96
HMGA1P17096 STK24-AS1-201ENST00000434547 1278 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
HMGA1P17096 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
HMGA1P17096 EXOSC4-202ENST00000525936 606 ntTSL 3 BASIC21.07■□□□□ 0.96
HMGA1P17096 PDS5A-202ENST00000503396 2685 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
HMGA1P17096 ILDR2-204ENST00000525740 2242 ntTSL 5 BASIC21.06■□□□□ 0.96
HMGA1P17096 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
HMGA1P17096 INPP1-202ENST00000392329 2162 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
HMGA1P17096 SARDH-203ENST00000371868 2266 ntTSL 2 BASIC21.06■□□□□ 0.96
HMGA1P17096 ZNF436-AS1-202ENST00000437367 606 ntTSL 2 BASIC21.06■□□□□ 0.96
HMGA1P17096 TTTY14-205ENST00000454875 544 ntTSL 2 BASIC21.06■□□□□ 0.96
HMGA1P17096 OPA3-203ENST00000544371 1146 ntTSL 2 BASIC21.06■□□□□ 0.96
HMGA1P17096 AL354712.1-201ENST00000563570 477 ntTSL 3 BASIC21.06■□□□□ 0.96
HMGA1P17096 GOSR2-208ENST00000573224 1115 ntTSL 5 BASIC21.06■□□□□ 0.96
HMGA1P17096 AC110285.5-201ENST00000611501 352 ntBASIC21.06■□□□□ 0.96
HMGA1P17096 DGAT2-201ENST00000228027 2453 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
HMGA1P17096 KCNAB3-201ENST00000303790 2458 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
HMGA1P17096 ZNF707-222ENST00000532158 2218 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
HMGA1P17096 ANKRD2-201ENST00000298808 1350 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
HMGA1P17096 BIN1-203ENST00000346226 2401 ntAPPRIS ALT2 TSL 1 (best) BASIC21.06■□□□□ 0.96
HMGA1P17096 PUF60-203ENST00000453551 1842 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
HMGA1P17096 ETV2-202ENST00000379026 1571 ntAPPRIS ALT2 TSL 2 BASIC21.06■□□□□ 0.96
HMGA1P17096 AC006128.1-201ENST00000624704 1661 ntBASIC21.05■□□□□ 0.96
HMGA1P17096 VGF-202ENST00000445482 2477 ntAPPRIS P1 TSL 5 BASIC21.05■□□□□ 0.96
HMGA1P17096 DENND1A-201ENST00000373618 3003 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
HMGA1P17096 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC21.05■□□□□ 0.96
HMGA1P17096 EGFL7-201ENST00000308874 1747 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
HMGA1P17096 IFI6-203ENST00000362020 828 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
HMGA1P17096 RAB29-203ENST00000414729 1157 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
HMGA1P17096 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC21.05■□□□□ 0.96
HMGA1P17096 AC092718.1-201ENST00000501068 1088 ntTSL 1 (best) BASIC21.05■□□□□ 0.96
HMGA1P17096 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC21.05■□□□□ 0.96
HMGA1P17096 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC21.05■□□□□ 0.96
HMGA1P17096 POU4F1-201ENST00000377208 4547 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
HMGA1P17096 SPAG16-202ENST00000331683 2177 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
HMGA1P17096 EEF1D-225ENST00000529272 1311 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
HMGA1P17096 FAM58A-204ENST00000576892 1306 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
HMGA1P17096 FAM98C-201ENST00000252530 1271 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
HMGA1P17096 MRPS24-201ENST00000317534 707 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
HMGA1P17096 IMMP2L-201ENST00000331762 1205 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
HMGA1P17096 C5orf56-203ENST00000378953 942 ntAPPRIS ALT2 TSL 2 BASIC21.04■□□□□ 0.96
HMGA1P17096 PSMG1-202ENST00000380900 907 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
HMGA1P17096 RALGPS1-206ENST00000394011 819 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
HMGA1P17096 MRPL2-207ENST00000487429 905 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
HMGA1P17096 TMEM72-203ENST00000544540 1018 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
HMGA1P17096 AC097641.1-201ENST00000580671 588 ntTSL 4 BASIC21.04■□□□□ 0.96
HMGA1P17096 MIR4497-201ENST00000583208 89 ntBASIC21.04■□□□□ 0.96
HMGA1P17096 AL121829.2-201ENST00000620908 328 ntBASIC21.04■□□□□ 0.96
HMGA1P17096 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC21.04■□□□□ 0.96
HMGA1P17096 ASPHD1-201ENST00000308748 1584 ntAPPRIS P2 TSL 1 (best) BASIC21.04■□□□□ 0.96
HMGA1P17096 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC21.04■□□□□ 0.96
HMGA1P17096 FP700111.2-201ENST00000619190 1892 ntBASIC21.04■□□□□ 0.96
HMGA1P17096 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
HMGA1P17096 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
HMGA1P17096 TNFAIP8L3-202ENST00000637513 2002 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
HMGA1P17096 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC21.04■□□□□ 0.96
HMGA1P17096 DND1-201ENST00000542735 1605 ntAPPRIS P1 TSL 1 (best) BASIC21.04■□□□□ 0.96
HMGA1P17096 CIRBP-215ENST00000588030 1509 ntAPPRIS P3 TSL 5 BASIC21.04■□□□□ 0.96
HMGA1P17096 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC21.04■□□□□ 0.96
HMGA1P17096 HOXC13-AS-201ENST00000512916 1408 ntTSL 3 BASIC21.04■□□□□ 0.96
HMGA1P17096 FBXO28-202ENST00000424254 1334 ntTSL 1 (best) BASIC21.04■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 17.8 ms