Protein–RNA interactions for Protein: P08670

VIM, Vimentin, humanhuman

Known RBP Predictions only

Length 466 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
VIMP08670 FLT1-201ENST00000282397 7092 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VIMP08670 CIDEB-202ENST00000336557 2409 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
VIMP08670 PEX7-201ENST00000318471 1464 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VIMP08670 TRIM14-202ENST00000342043 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VIMP08670 HNRNPAB-208ENST00000515193 1595 ntAPPRIS ALT2 TSL 5 BASIC20.28■□□□□ 0.84
VIMP08670 COQ10A-201ENST00000308197 1652 ntAPPRIS P3 TSL 1 (best) BASIC20.28■□□□□ 0.84
VIMP08670 AC093484.2-201ENST00000580996 2166 ntBASIC20.28■□□□□ 0.84
VIMP08670 ADNP2-201ENST00000262198 5393 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
VIMP08670 EPS8L1-203ENST00000540810 2360 ntTSL 2 BASIC20.28■□□□□ 0.84
VIMP08670 CXXC4-201ENST00000394767 5565 ntAPPRIS P1 TSL 5 BASIC20.28■□□□□ 0.84
VIMP08670 UBTF-202ENST00000343638 4684 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
VIMP08670 AC107959.1-202ENST00000502083 1945 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
VIMP08670 UBE2F-205ENST00000414443 2100 ntTSL 2 BASIC20.27■□□□□ 0.84
VIMP08670 ANTXR1-203ENST00000409829 2221 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
VIMP08670 ETV4-201ENST00000319349 2429 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VIMP08670 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC20.27■□□□□ 0.84
VIMP08670 AC087482.1-204ENST00000636067 2431 ntTSL 5 BASIC20.27■□□□□ 0.84
VIMP08670 CEP78-201ENST00000277082 2542 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
VIMP08670 SSC4D-201ENST00000275560 2801 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VIMP08670 MEN1-209ENST00000394376 3034 ntAPPRIS P3 TSL 5 BASIC20.27■□□□□ 0.84
VIMP08670 HIPK1-207ENST00000369561 3777 ntTSL 5 BASIC20.27■□□□□ 0.84
VIMP08670 INAVA-202ENST00000413687 2197 ntAPPRIS P2 TSL 2 BASIC20.27■□□□□ 0.84
VIMP08670 ANAPC1P1-202ENST00000616781 1771 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
VIMP08670 HSD11B1L-201ENST00000301382 1457 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
VIMP08670 TUSC3-203ENST00000503731 1498 ntAPPRIS P4 TSL 1 (best) BASIC20.27■□□□□ 0.84
VIMP08670 AL122058.1-201ENST00000412321 1166 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
VIMP08670 HOXC-AS1-201ENST00000505700 548 ntTSL 2 BASIC20.27■□□□□ 0.84
VIMP08670 LAT-217ENST00000630764 610 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
VIMP08670 SLC35A3-216ENST00000639221 1032 ntTSL 5 BASIC20.27■□□□□ 0.84
VIMP08670 FBXL3-201ENST00000355619 3503 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
VIMP08670 RELB-202ENST00000505236 2219 ntAPPRIS ALT2 TSL 5 BASIC20.27■□□□□ 0.84
VIMP08670 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
VIMP08670 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
VIMP08670 ELL2-201ENST00000237853 6046 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
VIMP08670 PCDH1-201ENST00000287008 4793 ntAPPRIS P3 TSL 5 BASIC20.27■□□□□ 0.83
VIMP08670 AVPR2-203ENST00000370049 1307 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
VIMP08670 USP21-201ENST00000289865 2195 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
VIMP08670 REEP2-202ENST00000378339 2170 ntAPPRIS ALT1 TSL 1 (best) BASIC20.27■□□□□ 0.83
VIMP08670 SCARF1-202ENST00000348987 2619 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
VIMP08670 FOSL1-201ENST00000312562 1669 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VIMP08670 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC20.26■□□□□ 0.83
VIMP08670 TRABD-201ENST00000303434 2329 ntAPPRIS P3 TSL 1 (best) BASIC20.26■□□□□ 0.83
VIMP08670 FBLN7-202ENST00000331203 2301 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VIMP08670 LIPG-203ENST00000577628 2323 ntTSL 2 BASIC20.26■□□□□ 0.83
VIMP08670 WNK2-202ENST00000395477 6834 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
VIMP08670 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
VIMP08670 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC20.26■□□□□ 0.83
VIMP08670 AP005435.1-201ENST00000529293 1178 ntBASIC20.26■□□□□ 0.83
VIMP08670 MIR6724-1-201ENST00000616420 92 ntBASIC20.26■□□□□ 0.83
VIMP08670 MIR6724-2-201ENST00000616483 92 ntBASIC20.26■□□□□ 0.83
VIMP08670 MIR6724-4-201ENST00000617390 92 ntBASIC20.26■□□□□ 0.83
VIMP08670 MIR6724-3-201ENST00000622482 92 ntBASIC20.26■□□□□ 0.83
VIMP08670 DMRT2-204ENST00000382251 2292 ntAPPRIS P1 TSL 5 BASIC20.26■□□□□ 0.83
VIMP08670 PARP15-202ENST00000464300 2156 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VIMP08670 FAM189B-204ENST00000368368 2609 ntTSL 1 (best) BASIC20.26■□□□□ 0.83
VIMP08670 VAV1-210ENST00000602142 2620 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VIMP08670 SCO1-203ENST00000577427 1601 ntTSL 3 BASIC20.26■□□□□ 0.83
VIMP08670 CNNM3-202ENST00000377060 3308 ntTSL 2 BASIC20.26■□□□□ 0.83
VIMP08670 FOXD4-201ENST00000382500 1974 ntAPPRIS P1 BASIC20.26■□□□□ 0.83
VIMP08670 AKAP17A-201ENST00000313871 3204 ntAPPRIS P2 TSL 1 (best) BASIC20.26■□□□□ 0.83
VIMP08670 ASCL2-201ENST00000331289 1852 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VIMP08670 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC20.26■□□□□ 0.83
VIMP08670 DEDD2-204ENST00000595337 1894 ntAPPRIS P3 TSL 3 BASIC20.26■□□□□ 0.83
VIMP08670 CCDC50-202ENST00000392456 2454 ntAPPRIS P4 TSL 1 (best) BASIC20.26■□□□□ 0.83
VIMP08670 MCUR1-201ENST00000379170 5471 ntAPPRIS P1 TSL 1 (best) BASIC20.26■□□□□ 0.83
VIMP08670 AC093503.3-201ENST00000624917 2352 ntBASIC20.26■□□□□ 0.83
VIMP08670 EMC8-202ENST00000435200 1935 ntTSL 2 BASIC20.25■□□□□ 0.83
VIMP08670 NAGPA-AS1-202ENST00000632058 2265 ntTSL 2 BASIC20.25■□□□□ 0.83
VIMP08670 IKBKG-214ENST00000618670 2069 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
VIMP08670 ZNF211-204ENST00000347302 2472 ntAPPRIS ALT2 TSL 1 (best) BASIC20.25■□□□□ 0.83
VIMP08670 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC20.25■□□□□ 0.83
VIMP08670 AC007114.1-201ENST00000576871 713 ntTSL 2 BASIC20.25■□□□□ 0.83
VIMP08670 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC20.25■□□□□ 0.83
VIMP08670 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VIMP08670 PTPN12-201ENST00000248594 3406 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VIMP08670 CAMKK1-202ENST00000348335 3563 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VIMP08670 COL5A3-201ENST00000264828 6174 ntAPPRIS P1 TSL 1 (best) BASIC20.25■□□□□ 0.83
VIMP08670 OTUB1-209ENST00000538426 1729 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
VIMP08670 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC20.24■□□□□ 0.83
VIMP08670 RAB1A-204ENST00000409892 2254 ntTSL 2 BASIC20.24■□□□□ 0.83
VIMP08670 ZNF511-201ENST00000359035 2004 ntTSL 2 BASIC20.24■□□□□ 0.83
VIMP08670 PXK-203ENST00000383715 1756 ntTSL 5 BASIC20.24■□□□□ 0.83
VIMP08670 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VIMP08670 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC20.24■□□□□ 0.83
VIMP08670 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VIMP08670 SLC38A7-205ENST00000564010 1437 ntTSL 2 BASIC20.24■□□□□ 0.83
VIMP08670 RSAD1-201ENST00000258955 2528 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VIMP08670 GAREM2-201ENST00000401533 4161 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VIMP08670 PTOV1-212ENST00000599732 1577 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VIMP08670 IFRD2-202ENST00000417626 2109 ntTSL 1 (best) BASIC20.24■□□□□ 0.83
VIMP08670 CLIP2-201ENST00000223398 5563 ntAPPRIS P1 TSL 5 BASIC20.24■□□□□ 0.83
VIMP08670 MPP5-201ENST00000261681 5552 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VIMP08670 FBXO24-201ENST00000241071 2276 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VIMP08670 ABHD12B-201ENST00000337334 1708 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
VIMP08670 RHBDL3-204ENST00000538145 1338 ntAPPRIS ALT2 TSL 1 (best) BASIC20.24■□□□□ 0.83
VIMP08670 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC20.24■□□□□ 0.83
VIMP08670 PKMYT1-216ENST00000574730 1806 ntTSL 2 BASIC20.23■□□□□ 0.83
VIMP08670 RELB-207ENST00000625761 2279 ntAPPRIS ALT2 TSL 5 BASIC20.23■□□□□ 0.83
VIMP08670 GTF2IP4-202ENST00000544802 3609 ntTSL 1 (best) BASIC20.23■□□□□ 0.83
VIMP08670 CA7-201ENST00000338437 1555 ntAPPRIS P1 TSL 1 (best) BASIC20.23■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 52.3 ms