Protein–RNA interactions for Protein: O75940

SMNDC1, Survival of motor neuron-related-splicing factor 30, humanhuman

Known RBP eCLIP

Length 238 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SMNDC1O75940 PPOX-213ENST00000497522 816 ntTSL 414.34□□□□□ -0.111e-10■■■□□ 14.7
SMNDC1O75940 PPOX-217ENST00000539753 816 ntTSL 513□□□□□ -0.331e-10■■■□□ 14.7
SMNDC1O75940 PPOX-204ENST00000462866 473 ntTSL 5 BASIC11.97□□□□□ -0.491e-10■■■□□ 14.7
SMNDC1O75940 PPOX-218ENST00000541818 1193 ntTSL 210.15□□□□□ -0.781e-10■■■□□ 14.7
SMNDC1O75940 PPOX-216ENST00000537829 728 ntTSL 29.59□□□□□ -0.871e-10■■■□□ 14.7
SMNDC1O75940 PPOX-215ENST00000537523 734 ntTSL 39.47□□□□□ -0.891e-10■■■□□ 14.7
SMNDC1O75940 PPOX-206ENST00000466452 784 ntTSL 28.34□□□□□ -1.071e-10■■■□□ 14.7
SMNDC1O75940 RPL21-203ENST00000319826 806 ntAPPRIS P1 TSL 2 BASIC14.57□□□□□ -0.081e-8■■■□□ 14.7
SMNDC1O75940 RPL21-206ENST00000466550 756 ntTSL 210.17□□□□□ -0.781e-8■■■□□ 14.7
SMNDC1O75940 RPL21-202ENST00000311549 815 ntAPPRIS P1 TSL 1 (best) BASIC9.43□□□□□ -0.91e-8■■■□□ 14.7
SMNDC1O75940 RPL21-201ENST00000272274 616 ntAPPRIS P1 TSL 2 BASIC9.1□□□□□ -0.951e-8■■■□□ 14.7
SMNDC1O75940 RPL21-204ENST00000326092 641 ntAPPRIS P1 TSL 2 BASIC8.75□□□□□ -1.011e-8■■■□□ 14.7
SMNDC1O75940 RPL21-208ENST00000483765 453 ntTSL 38.44□□□□□ -1.061e-8■■■□□ 14.7
SMNDC1O75940 RPL21-205ENST00000461690 681 ntTSL 58.36□□□□□ -1.071e-8■■■□□ 14.7
SMNDC1O75940 RPL21-209ENST00000485756 675 ntTSL 24.81□□□□□ -1.641e-8■■■□□ 14.7
SMNDC1O75940 RPL21-210ENST00000493317 438 ntTSL 24.73□□□□□ -1.651e-8■■■□□ 14.7
SMNDC1O75940 SNORA8-201ENST00000384574 139 ntBASIC3.1□□□□□ -1.911e-81■■■□□ 14.7
SMNDC1O75940 TNPO3-203ENST00000471234 3283 ntTSL 1 (best) BASIC9□□□□□ -0.972e-14■■■□□ 14.7
SMNDC1O75940 TNPO3-204ENST00000482320 3585 ntTSL 1 (best) BASIC8.82□□□□□ -12e-14■■■□□ 14.7
SMNDC1O75940 TNPO3-205ENST00000627585 4514 ntTSL 2 BASIC8.7□□□□□ -1.022e-14■■■□□ 14.7
SMNDC1O75940 TNPO3-201ENST00000265388 4153 ntAPPRIS P1 TSL 1 (best) BASIC8.59□□□□□ -1.032e-14■■■□□ 14.7
SMNDC1O75940 EIF1-206ENST00000586699 572 ntTSL 26.52□□□□□ -1.372e-14■■■□□ 14.7
SMNDC1O75940 VEGFA-214ENST00000493786 551 ntTSL 26.77□□□□□ -1.335e-10■■■□□ 14.7
SMNDC1O75940 CPNE7-202ENST00000319518 2409 ntAPPRIS P1 TSL 1 (best) BASIC21.67■■□□□ 1.069e-7■■■□□ 14.7
SMNDC1O75940 CPNE7-201ENST00000268720 2657 ntTSL 1 (best) BASIC19.78■□□□□ 0.769e-7■■■□□ 14.7
SMNDC1O75940 SRRM2-217ENST00000573692 459 ntTSL 315.41■□□□□ 0.063e-58■■■□□ 14.7
SMNDC1O75940 TFRC-215ENST00000491658 396 ntTSL 57.04□□□□□ -1.287e-27■■■□□ 14.7
SMNDC1O75940 GNL3-201ENST00000394799 2041 ntAPPRIS ALT2 TSL 2 BASIC11.47□□□□□ -0.577e-15■■■□□ 14.7
SMNDC1O75940 GNL3-202ENST00000418458 2040 ntAPPRIS P3 TSL 1 (best) BASIC11.26□□□□□ -0.617e-15■■■□□ 14.7
SMNDC1O75940 GNL3-211ENST00000496254 2118 ntTSL 55.96□□□□□ -1.457e-15■■■□□ 14.7
SMNDC1O75940 ASPSCR1-221ENST00000585274 984 ntTSL 516.3■□□□□ 0.23e-7■■■□□ 14.6
SMNDC1O75940 EIF4G2-218ENST00000531416 1969 ntTSL 213.9□□□□□ -0.188e-12■■■□□ 14.6
SMNDC1O75940 EIF4G2-225ENST00000532383 6769 ntTSL 1 (best)9.82□□□□□ -0.848e-12■■■□□ 14.6
SMNDC1O75940 EIF4G2-205ENST00000525681 3654 ntAPPRIS ALT2 TSL 1 (best) BASIC8.48□□□□□ -1.058e-12■■■□□ 14.6
SMNDC1O75940 EIF4G2-208ENST00000526148 4001 ntAPPRIS ALT2 TSL 1 (best) BASIC7.66□□□□□ -1.188e-12■■■□□ 14.6
SMNDC1O75940 TMC6-209ENST00000588087 2384 ntTSL 222.13■■□□□ 1.139e-7■■■□□ 14.6
SMNDC1O75940 TMC6-212ENST00000589553 2389 ntTSL 2 BASIC21.46■■□□□ 1.039e-7■■■□□ 14.6
SMNDC1O75940 TMC6-202ENST00000322914 2786 ntAPPRIS P1 TSL 1 (best) BASIC19.09■□□□□ 0.659e-7■■■□□ 14.6
SMNDC1O75940 TMC6-201ENST00000306591 1681 ntTSL 5 BASIC18.75■□□□□ 0.599e-7■■■□□ 14.6
SMNDC1O75940 TMC6-224ENST00000593044 3070 ntTSL 216.65■□□□□ 0.269e-7■■■□□ 14.6
SMNDC1O75940 TMC6-216ENST00000590602 5268 ntAPPRIS P1 TSL 2 BASIC16.17■□□□□ 0.189e-7■■■□□ 14.6
SMNDC1O75940 D2HGDH-203ENST00000403782 2208 ntTSL 2 BASIC25.2■■□□□ 1.622e-8■■■□□ 14.6
SMNDC1O75940 D2HGDH-215ENST00000486953 2232 ntTSL 1 (best)24.66■■□□□ 1.542e-8■■■□□ 14.6
SMNDC1O75940 D2HGDH-202ENST00000400769 2277 ntTSL 224■■□□□ 1.432e-8■■■□□ 14.6
SMNDC1O75940 D2HGDH-201ENST00000321264 2617 ntAPPRIS P1 TSL 1 (best) BASIC22.38■■□□□ 1.172e-8■■■□□ 14.6
SMNDC1O75940 D2HGDH-214ENST00000473126 1612 ntTSL 1 (best)21.77■■□□□ 1.082e-8■■■□□ 14.6
SMNDC1O75940 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC19.88■□□□□ 0.772e-8■■■□□ 14.6
SMNDC1O75940 D2HGDH-205ENST00000432449 566 ntTSL 517.81■□□□□ 0.442e-8■■■□□ 14.6
SMNDC1O75940 D2HGDH-211ENST00000467427 555 ntTSL 317.81■□□□□ 0.442e-8■■■□□ 14.6
SMNDC1O75940 D2HGDH-206ENST00000436747 4549 ntTSL 1 (best)17.21■□□□□ 0.352e-8■■■□□ 14.6
SMNDC1O75940 PCED1A-204ENST00000448755 1170 ntTSL 316.59■□□□□ 0.252e-8■■■□□ 14.6
SMNDC1O75940 PCED1A-201ENST00000356872 1706 ntTSL 2 BASIC16.36■□□□□ 0.212e-8■■■□□ 14.6
SMNDC1O75940 MCCC2-208ENST00000512218 2127 ntTSL 216.16■□□□□ 0.182e-8■■■□□ 14.6
SMNDC1O75940 D2HGDH-213ENST00000470343 1026 ntTSL 1 (best)16.12■□□□□ 0.172e-8■■■□□ 14.6
SMNDC1O75940 MCCC2-205ENST00000509358 1214 ntTSL 1 (best) BASIC15.75■□□□□ 0.112e-8■■■□□ 14.6
SMNDC1O75940 MCCC2-209ENST00000629193 1128 ntTSL 1 (best) BASIC15.1■□□□□ 0.012e-8■■■□□ 14.6
SMNDC1O75940 OXA1L-204ENST00000431881 889 ntTSL 314.63□□□□□ -0.078e-16■■■□□ 14.6
SMNDC1O75940 PCED1A-203ENST00000439542 1187 ntTSL 214.33□□□□□ -0.122e-8■■■□□ 14.6
SMNDC1O75940 OXA1L-205ENST00000442110 691 ntTSL 513.05□□□□□ -0.328e-16■■■□□ 14.6
SMNDC1O75940 D2HGDH-207ENST00000437164 269 ntTSL 512.78□□□□□ -0.362e-8■■■□□ 14.6
SMNDC1O75940 MCCC2-201ENST00000340941 3665 ntAPPRIS P1 TSL 1 (best) BASIC12.41□□□□□ -0.422e-8■■■□□ 14.6
SMNDC1O75940 OXA1L-206ENST00000473744 824 ntTSL 310.37□□□□□ -0.758e-16■■■□□ 14.6
SMNDC1O75940 D2HGDH-216ENST00000496252 496 ntTSL 410.01□□□□□ -0.812e-8■■■□□ 14.6
SMNDC1O75940 MCCC2-206ENST00000509539 895 ntTSL 39.11□□□□□ -0.952e-8■■■□□ 14.6
SMNDC1O75940 MCCC2-202ENST00000505435 716 ntTSL 37.22□□□□□ -1.252e-8■■■□□ 14.6
SMNDC1O75940 MCCC2-207ENST00000510895 2078 ntTSL 26.48□□□□□ -1.372e-8■■■□□ 14.6
SMNDC1O75940 MCCC2-203ENST00000505787 774 ntTSL 54.51□□□□□ -1.692e-8■■■□□ 14.6
SMNDC1O75940 D2HGDH-209ENST00000454048 234 ntTSL 53.75□□□□□ -1.812e-8■■■□□ 14.6
SMNDC1O75940 AK3-203ENST00000447596 705 ntTSL 2 BASIC20.55■□□□□ 0.882e-7■■■□□ 14.6
SMNDC1O75940 AK3-202ENST00000381809 2736 ntAPPRIS P1 TSL 1 (best) BASIC19.86■□□□□ 0.772e-7■■■□□ 14.6
SMNDC1O75940 REXO2-201ENST00000265881 1161 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.482e-7■■■□□ 14.6
SMNDC1O75940 REXO2-208ENST00000539754 791 ntTSL 2 BASIC18.04■□□□□ 0.482e-7■■■□□ 14.6
SMNDC1O75940 SLC25A17-211ENST00000443810 593 ntTSL 317.01■□□□□ 0.312e-7■■■□□ 14.6
SMNDC1O75940 CDK10-207ENST00000504473 910 ntTSL 316.61■□□□□ 0.252e-7■■■□□ 14.6
SMNDC1O75940 SLC25A17-203ENST00000412879 561 ntTSL 416.32■□□□□ 0.22e-7■■■□□ 14.6
SMNDC1O75940 REXO2-220ENST00000611665 1158 ntAPPRIS P1 TSL 1 (best) BASIC16.2■□□□□ 0.182e-7■■■□□ 14.6
SMNDC1O75940 REXO2-213ENST00000543131 539 ntTSL 316.05■□□□□ 0.162e-7■■■□□ 14.6
SMNDC1O75940 REXO2-202ENST00000538198 449 ntTSL 316.01■□□□□ 0.152e-7■■■□□ 14.6
SMNDC1O75940 CAPN2-201ENST00000295006 3573 ntAPPRIS P1 TSL 1 (best) BASIC15.9■□□□□ 0.142e-7■■■□□ 14.6
SMNDC1O75940 REXO2-206ENST00000539275 710 ntTSL 1 (best) BASIC15.84■□□□□ 0.132e-7■■■□□ 14.6
SMNDC1O75940 CDK10-219ENST00000567932 725 ntTSL 315.74■□□□□ 0.112e-7■■■□□ 14.6
SMNDC1O75940 SLC25A17-214ENST00000458600 801 ntTSL 315.4■□□□□ 0.062e-7■■■□□ 14.6
SMNDC1O75940 SLC25A17-217ENST00000544408 2060 ntTSL 2 BASIC14.14□□□□□ -0.152e-7■■■□□ 14.6
SMNDC1O75940 WASH4P-201ENST00000564273 1246 ntBASIC14.07□□□□□ -0.162e-7■■■□□ 14.6
SMNDC1O75940 CDK10-214ENST00000512912 658 ntTSL 513.92□□□□□ -0.182e-7■■■□□ 14.6
SMNDC1O75940 REXO2-205ENST00000539119 664 ntTSL 313.83□□□□□ -0.22e-7■■■□□ 14.6
SMNDC1O75940 CDK10-210ENST00000507205 1215 ntTSL 213.82□□□□□ -0.22e-7■■■□□ 14.6
SMNDC1O75940 SLC25A13-202ENST00000416240 3192 ntAPPRIS ALT1 TSL 1 (best) BASIC13.4□□□□□ -0.262e-7■■■□□ 14.6
SMNDC1O75940 CDK10-213ENST00000511415 707 ntTSL 313.11□□□□□ -0.312e-7■■■□□ 14.6
SMNDC1O75940 SUPT5H-216ENST00000599335 3796 ntTSL 211.97□□□□□ -0.492e-7■■■□□ 14.6
SMNDC1O75940 SLC25A17-210ENST00000435456 2262 ntAPPRIS P1 TSL 1 (best) BASIC11.33□□□□□ -0.62e-7■■■□□ 14.6
SMNDC1O75940 CDK10-203ENST00000378277 576 ntTSL 211.23□□□□□ -0.612e-7■■■□□ 14.6
SMNDC1O75940 ULK1-206ENST00000542313 307 ntTSL 310.88□□□□□ -0.672e-7■■■□□ 14.6
SMNDC1O75940 SLC25A17-206ENST00000427084 749 ntTSL 510.87□□□□□ -0.672e-7■■■□□ 14.6
SMNDC1O75940 SLC25A17-204ENST00000420970 1060 ntTSL 510.78□□□□□ -0.682e-7■■■□□ 14.6
SMNDC1O75940 AK3-204ENST00000611749 4029 ntTSL 4 BASIC10.51□□□□□ -0.732e-7■■■□□ 14.6
SMNDC1O75940 CAPN2-202ENST00000433674 3264 ntTSL 2 BASIC10.09□□□□□ -0.792e-7■■■□□ 14.6
SMNDC1O75940 REXO2-204ENST00000538791 1081 ntTSL 210.02□□□□□ -0.812e-7■■■□□ 14.6
SMNDC1O75940 REXO2-210ENST00000540492 1088 ntTSL 29.67□□□□□ -0.862e-7■■■□□ 14.6
SMNDC1O75940 AK3-201ENST00000359883 1536 ntTSL 1 (best) BASIC9.52□□□□□ -0.882e-7■■■□□ 14.6
Retrieved 100 of 11,362 protein–RNA pairs in 275.8 ms