Protein–RNA interactions for Protein: E9PGA6

C1QTNF3-AMACR, C1QTNF3-AMACR readthrough (NMD candidate), humanhuman

Predictions only

Length 284 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
C1QTNF3-AMACRE9PGA6 SLC25A42-201ENST00000318596 3120 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 SETD6-202ENST00000310682 2042 ntAPPRIS P3 TSL 2 BASIC20.32■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 WWC2-AS2-201ENST00000578387 2183 ntBASIC20.32■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 DTNB-201ENST00000288642 2464 ntAPPRIS ALT2 TSL 2 BASIC20.32■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 DTNB-208ENST00000406818 2474 ntAPPRIS P4 TSL 1 (best) BASIC20.32■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 PLK5-205ENST00000642079 1969 ntBASIC20.32■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 ILDR2-206ENST00000528703 2446 ntAPPRIS ALT2 TSL 5 BASIC20.32■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 AF106564.1-201ENST00000607058 2553 ntBASIC20.32■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 SOX10-201ENST00000360880 2861 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 SOX10-202ENST00000396884 2879 ntAPPRIS P1 TSL 1 (best) BASIC20.32■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 PANK1-201ENST00000307534 6976 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 DTWD2-203ENST00000510708 2307 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 ARHGDIA-202ENST00000400721 1568 ntTSL 2 BASIC20.31■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 MTFP1-202ENST00000355143 891 ntTSL 2 BASIC20.31■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 PEX7-202ENST00000367756 680 ntTSL 3 BASIC20.31■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 DLEU7-203ENST00000504404 1122 ntAPPRIS ALT2 TSL 1 (best) BASIC20.31■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC20.31■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 NAGK-229ENST00000613852 1801 ntTSL 1 (best) BASIC20.31■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 AC010616.1-201ENST00000597630 2078 ntAPPRIS P1 TSL 5 BASIC20.31■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 ZC3HAV1L-201ENST00000275766 1753 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 RNH1-202ENST00000356187 1791 ntAPPRIS P1 TSL 1 (best) BASIC20.31■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 CIDEB-201ENST00000258807 2294 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 LSR-202ENST00000354900 2105 ntAPPRIS ALT2 TSL 1 (best) BASIC20.3■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC20.3■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 TSPAN3-210ENST00000561277 1592 ntTSL 5 BASIC20.3■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 AC079145.1-201ENST00000416575 541 ntTSL 2 BASIC20.3■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 LINC00708-201ENST00000428165 916 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 NT5C3B-203ENST00000435506 975 ntAPPRIS P1 TSL 5 BASIC20.3■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 AC073050.1-201ENST00000442316 462 ntTSL 3 BASIC20.3■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 LINC00969-218ENST00000452844 583 ntTSL 3 BASIC20.3■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 LINC00969-221ENST00000457233 1279 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 AP001458.2-201ENST00000528405 577 ntAPPRIS P1 TSL 4 BASIC20.3■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 DEDD2-205ENST00000596251 1183 ntAPPRIS P3 TSL 1 (best) BASIC20.3■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 CALY-201ENST00000252939 2271 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC20.3■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 AL161756.1-202ENST00000359491 1717 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 ZNF302-215ENST00000627982 1723 ntAPPRIS ALT2 TSL 5 BASIC20.3■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 GRIN1-208ENST00000371561 5149 ntTSL 1 (best) BASIC20.3■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 GORASP1-220ENST00000479927 1345 ntTSL 2 BASIC20.29■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 HSD11B1L-219ENST00000581893 1540 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 GUSB-201ENST00000304895 2300 ntAPPRIS P1 TSL 1 (best) BASIC20.29■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 MCAT-202ENST00000327555 1134 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 CMTM7-202ENST00000349718 1214 ntTSL 1 (best) BASIC20.29■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC20.29■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC20.29■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 AC011446.2-202ENST00000592882 756 ntTSL 3 BASIC20.29■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC20.29■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 DACT1-204ENST00000541264 2610 ntAPPRIS ALT2 TSL 2 BASIC20.29■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 SPEG-203ENST00000396688 1457 ntTSL 3 BASIC20.29■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 SEPT7-206ENST00000435235 1584 ntTSL 2 BASIC20.29■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 ZFP69B-202ENST00000411995 2109 ntAPPRIS P1 TSL 5 BASIC20.29■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 HOMEZ-201ENST00000357460 4971 ntAPPRIS P2 TSL 1 (best) BASIC20.28■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 PMPCA-203ENST00000399219 1987 ntTSL 2 BASIC20.28■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 ABLIM2-204ENST00000407564 2291 ntAPPRIS ALT2 TSL 1 (best) BASIC20.28■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 NPAS1-207ENST00000602189 1643 ntTSL 5 BASIC20.28■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 LOXL1-AS1-210ENST00000567257 2358 ntTSL 2 BASIC20.28■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 DALRD3-202ENST00000341949 1739 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 MAPRE3-203ENST00000405074 1801 ntTSL 3 BASIC20.28■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 POMC-201ENST00000264708 1074 ntAPPRIS P1 TSL 2 BASIC20.28■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 RGS20-202ENST00000297313 2104 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 PARL-201ENST00000311101 1240 ntTSL 1 (best) BASIC20.28■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 THEM4-205ENST00000489410 643 ntTSL 2 BASIC20.28■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 SMIM20-201ENST00000506197 935 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 CERNA3-201ENST00000521403 557 ntTSL 3 BASIC20.28■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 NDUFS3-212ENST00000534208 583 ntTSL 4 BASIC20.28■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 NCBP2-AS2-201ENST00000602845 918 ntAPPRIS P1 BASIC20.28■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 CHN1-203ENST00000409156 1761 ntTSL 2 BASIC20.28■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 TMEM9B-205ENST00000534025 2083 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 CERS1-205ENST00000623927 2558 ntAPPRIS P1 TSL 1 (best) BASIC20.28■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 TRIM73-202ENST00000430211 1321 ntAPPRIS ALT2 TSL 2 BASIC20.27■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 MAEA-213ENST00000510794 1607 ntTSL 2 BASIC20.27■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC20.27■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 FNIP1-204ENST00000511848 1720 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 SCOC-207ENST00000506597 1838 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 CNNM1-201ENST00000356713 5959 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 DAPK3-201ENST00000301264 2105 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 RBAK-202ENST00000396912 6551 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 ZNF316-201ENST00000382252 5392 ntAPPRIS P1 TSL 5 BASIC20.27■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 MRGBP-201ENST00000370487 2781 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 AC026310.3-201ENST00000625186 2373 ntBASIC20.27■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 LYSMD2-201ENST00000267838 1759 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 LAYN-204ENST00000525126 1763 ntTSL 5 BASIC20.27■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 POU2F2-215ENST00000560398 1788 ntTSL 5 BASIC20.27■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 AC006128.1-201ENST00000624704 1661 ntBASIC20.27■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC20.27■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 EGFEM1P-209ENST00000502332 728 ntTSL 3 BASIC20.27■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 CAVIN3-203ENST00000530979 957 ntTSL 2 BASIC20.27■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 RHOD-202ENST00000532559 538 ntTSL 3 BASIC20.27■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 AC013268.1-201ENST00000639717 1208 ntTSL 5 BASIC20.27■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 IER5L-201ENST00000372491 2711 ntAPPRIS P1 BASIC20.27■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 SNX18-203ENST00000381410 5218 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 DES-201ENST00000373960 2248 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 ALG1-201ENST00000262374 2132 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.84
C1QTNF3-AMACRE9PGA6 SEC61A2-205ENST00000379033 2462 ntTSL 2 BASIC20.27■□□□□ 0.83
C1QTNF3-AMACRE9PGA6 SCAMP3-201ENST00000302631 1446 ntAPPRIS P1 TSL 1 (best) BASIC20.27■□□□□ 0.83
C1QTNF3-AMACRE9PGA6 TNFRSF25-203ENST00000351959 1441 ntAPPRIS ALT2 TSL 1 (best) BASIC20.27■□□□□ 0.83
C1QTNF3-AMACRE9PGA6 CDKN2B-AS1-217ENST00000585267 1337 ntTSL 1 (best) BASIC20.27■□□□□ 0.83
C1QTNF3-AMACRE9PGA6 FAM76A-205ENST00000419687 1661 ntTSL 2 BASIC20.26■□□□□ 0.83
Retrieved 100 of 98,524 protein–RNA pairs in 19.5 ms