Protein–RNA interactions for Protein: Q9Y566

SHANK1, SH3 and multiple ankyrin repeat domains protein 1, humanhuman

Predictions only

Length 2,161 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1Q9Y566 LIMS2-201ENST00000324938 2111 ntAPPRIS P3 TSL 1 (best) BASIC18.41■□□□□ 0.54
SHANK1Q9Y566 AC019257.1-201ENST00000517676 557 ntTSL 5 BASIC18.41■□□□□ 0.54
SHANK1Q9Y566 AP003071.4-201ENST00000562276 1284 ntBASIC18.41■□□□□ 0.54
SHANK1Q9Y566 AL356652.1-201ENST00000615962 565 ntBASIC18.41■□□□□ 0.54
SHANK1Q9Y566 AC133555.3-201ENST00000549950 1693 ntAPPRIS P5 TSL 5 BASIC18.41■□□□□ 0.54
SHANK1Q9Y566 AC106782.1-201ENST00000550538 1693 ntAPPRIS P5 TSL 5 BASIC18.41■□□□□ 0.54
SHANK1Q9Y566 KCNMA1-283ENST00000640523 5425 ntAPPRIS ALT2 TSL 5 BASIC18.41■□□□□ 0.54
SHANK1Q9Y566 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC18.4■□□□□ 0.54
SHANK1Q9Y566 PPP1R36-201ENST00000298705 1405 ntAPPRIS P2 TSL 1 (best) BASIC18.4■□□□□ 0.54
SHANK1Q9Y566 EEFSEC-201ENST00000254730 2232 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SHANK1Q9Y566 ARL13B-205ENST00000471138 2206 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SHANK1Q9Y566 HOXB-AS3-204ENST00000466037 522 ntTSL 3 BASIC18.4■□□□□ 0.54
SHANK1Q9Y566 AC009065.4-203ENST00000562838 535 ntTSL 2 BASIC18.4■□□□□ 0.54
SHANK1Q9Y566 SLC39A11-207ENST00000579732 1004 ntTSL 2 BASIC18.4■□□□□ 0.54
SHANK1Q9Y566 MIR6786-201ENST00000616843 113 ntBASIC18.4■□□□□ 0.54
SHANK1Q9Y566 TPSB2-203ENST00000612142 1352 ntAPPRIS P5 TSL 1 (best) BASIC18.4■□□□□ 0.54
SHANK1Q9Y566 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SHANK1Q9Y566 PLSCR3-201ENST00000324822 1689 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SHANK1Q9Y566 TM7SF2-201ENST00000279263 1722 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SHANK1Q9Y566 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SHANK1Q9Y566 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SHANK1Q9Y566 ACVRL1-201ENST00000388922 1971 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SHANK1Q9Y566 POTED-202ENST00000620442 1988 ntAPPRIS ALT2 TSL 1 (best) BASIC18.4■□□□□ 0.54
SHANK1Q9Y566 RAP2A-201ENST00000245304 5487 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SHANK1Q9Y566 PLPP5-203ENST00000424479 2130 ntAPPRIS P1 TSL 1 (best) BASIC18.4■□□□□ 0.54
SHANK1Q9Y566 B3GAT3-205ENST00000534026 1120 ntTSL 2 BASIC18.4■□□□□ 0.54
SHANK1Q9Y566 GOLGA2P7-203ENST00000557881 896 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SHANK1Q9Y566 GOLGA2P10-205ENST00000618267 983 ntTSL 1 (best) BASIC18.4■□□□□ 0.54
SHANK1Q9Y566 BTBD1-202ENST00000379403 1467 ntTSL 5 BASIC18.39■□□□□ 0.54
SHANK1Q9Y566 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.54
SHANK1Q9Y566 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC18.39■□□□□ 0.53
SHANK1Q9Y566 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SHANK1Q9Y566 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SHANK1Q9Y566 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SHANK1Q9Y566 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SHANK1Q9Y566 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SHANK1Q9Y566 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SHANK1Q9Y566 MOK-226ENST00000522874 1890 ntAPPRIS ALT2 TSL 5 BASIC18.39■□□□□ 0.53
SHANK1Q9Y566 GAMT-201ENST00000252288 1121 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SHANK1Q9Y566 DBNL-214ENST00000456905 1241 ntTSL 2 BASIC18.39■□□□□ 0.53
SHANK1Q9Y566 MLF2-210ENST00000542154 838 ntAPPRIS P1 TSL 5 BASIC18.39■□□□□ 0.53
SHANK1Q9Y566 ATP6V0C-203ENST00000565223 668 ntTSL 3 BASIC18.39■□□□□ 0.53
SHANK1Q9Y566 ATP6V0C-204ENST00000568562 477 ntTSL 3 BASIC18.39■□□□□ 0.53
SHANK1Q9Y566 AC092865.7-201ENST00000641832 219 ntBASIC18.39■□□□□ 0.53
SHANK1Q9Y566 CDX1-202ENST00000616154 1343 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SHANK1Q9Y566 TM7SF2-202ENST00000345348 1490 ntTSL 1 (best) BASIC18.39■□□□□ 0.53
SHANK1Q9Y566 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC18.39■□□□□ 0.53
SHANK1Q9Y566 SMPD2-201ENST00000258052 1645 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SHANK1Q9Y566 DUSP2-201ENST00000288943 1688 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SHANK1Q9Y566 RHCE-204ENST00000349320 1810 ntAPPRIS ALT2 TSL 2 BASIC18.39■□□□□ 0.53
SHANK1Q9Y566 NR0B1-202ENST00000378970 2021 ntAPPRIS P1 TSL 1 (best) BASIC18.39■□□□□ 0.53
SHANK1Q9Y566 BCL11B-203ENST00000443726 2599 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
SHANK1Q9Y566 SYNGR2-201ENST00000225777 2325 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SHANK1Q9Y566 CBLN3-201ENST00000267406 2346 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SHANK1Q9Y566 CNTFR-202ENST00000378980 2052 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SHANK1Q9Y566 GRK4-201ENST00000345167 2013 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SHANK1Q9Y566 TMEM165-201ENST00000381334 1928 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SHANK1Q9Y566 ZNF568-208ENST00000586353 1902 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SHANK1Q9Y566 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC18.38■□□□□ 0.53
SHANK1Q9Y566 BZW1-209ENST00000452790 1473 ntTSL 2 BASIC18.38■□□□□ 0.53
SHANK1Q9Y566 NFKBIL1-201ENST00000376145 1401 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SHANK1Q9Y566 BIRC7-202ENST00000342412 1302 ntAPPRIS ALT2 TSL 1 (best) BASIC18.38■□□□□ 0.53
SHANK1Q9Y566 UBE2F-203ENST00000409633 837 ntTSL 3 BASIC18.38■□□□□ 0.53
SHANK1Q9Y566 AL929601.1-201ENST00000551565 573 ntTSL 4 BASIC18.38■□□□□ 0.53
SHANK1Q9Y566 AC090970.2-201ENST00000561318 865 ntTSL 5 BASIC18.38■□□□□ 0.53
SHANK1Q9Y566 AL049597.2-201ENST00000565575 961 ntBASIC18.38■□□□□ 0.53
SHANK1Q9Y566 FAM66C-208ENST00000541558 2087 ntTSL 2 BASIC18.38■□□□□ 0.53
SHANK1Q9Y566 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SHANK1Q9Y566 MPC2-201ENST00000271373 798 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SHANK1Q9Y566 MSGN1-201ENST00000281047 606 ntAPPRIS P1 BASIC18.38■□□□□ 0.53
SHANK1Q9Y566 RER1-204ENST00000378518 522 ntTSL 3 BASIC18.38■□□□□ 0.53
SHANK1Q9Y566 AP001059.1-201ENST00000442785 523 ntTSL 3 BASIC18.38■□□□□ 0.53
SHANK1Q9Y566 MCRIP1-203ENST00000538396 925 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SHANK1Q9Y566 KRTAP5-11-203ENST00000617152 558 ntAPPRIS ALT2 TSL 5 BASIC18.38■□□□□ 0.53
SHANK1Q9Y566 PDCD2-203ENST00000443345 1897 ntTSL 1 (best) BASIC18.38■□□□□ 0.53
SHANK1Q9Y566 SPSB3-208ENST00000566339 1784 ntAPPRIS P1 TSL 1 (best) BASIC18.38■□□□□ 0.53
SHANK1Q9Y566 ZNF584-203ENST00000593920 2187 ntTSL 2 BASIC18.37■□□□□ 0.53
SHANK1Q9Y566 MPPED1-203ENST00000443721 2507 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
SHANK1Q9Y566 PHLDB2-210ENST00000478922 1861 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SHANK1Q9Y566 SLC1A7-201ENST00000371491 1306 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SHANK1Q9Y566 GOLGA2P10-204ENST00000618004 1349 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SHANK1Q9Y566 CHCHD10-201ENST00000401675 691 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
SHANK1Q9Y566 AL133410.2-201ENST00000425499 696 ntTSL 5 BASIC18.37■□□□□ 0.53
SHANK1Q9Y566 AC099329.3-201ENST00000431549 602 ntAPPRIS P1 TSL 4 BASIC18.37■□□□□ 0.53
SHANK1Q9Y566 TSPAN14-209ENST00000481124 808 ntTSL 2 BASIC18.37■□□□□ 0.53
SHANK1Q9Y566 SNX5-213ENST00000486039 602 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SHANK1Q9Y566 ARF3-208ENST00000541959 807 ntAPPRIS P1 TSL 5 BASIC18.37■□□□□ 0.53
SHANK1Q9Y566 EIPR1-206ENST00000443925 1771 ntTSL 3 BASIC18.37■□□□□ 0.53
SHANK1Q9Y566 MSL1-204ENST00000578648 2267 ntTSL 5 BASIC18.37■□□□□ 0.53
SHANK1Q9Y566 ADCK2-203ENST00000476491 2092 ntTSL 1 (best) BASIC18.37■□□□□ 0.53
SHANK1Q9Y566 STX5-203ENST00000394690 1568 ntTSL 5 BASIC18.37■□□□□ 0.53
SHANK1Q9Y566 ZNF534-201ENST00000301085 1525 ntTSL 2 BASIC18.37■□□□□ 0.53
SHANK1Q9Y566 CCM2-206ENST00000474617 1532 ntTSL 5 BASIC18.37■□□□□ 0.53
SHANK1Q9Y566 RBM38-203ENST00000356208 2382 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SHANK1Q9Y566 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC18.37■□□□□ 0.53
SHANK1Q9Y566 E2F1-201ENST00000343380 2503 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SHANK1Q9Y566 SHISA4-201ENST00000362011 1341 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SHANK1Q9Y566 MZB1-201ENST00000302125 825 ntAPPRIS P1 TSL 1 (best) BASIC18.37■□□□□ 0.53
SHANK1Q9Y566 NELFE-206ENST00000444811 1202 ntAPPRIS ALT2 TSL 2 BASIC18.37■□□□□ 0.53
SHANK1Q9Y566 AF131216.3-201ENST00000525867 1099 ntTSL 2 BASIC18.37■□□□□ 0.53
Retrieved 100 of 98,524 protein–RNA pairs in 38.8 ms