Protein–RNA interactions for Protein: Q9NY93

DDX56, Probable ATP-dependent RNA helicase DDX56, humanhuman

Known RBP Predictions only

Length 547 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
DDX56Q9NY93 WIPF1-203ENST00000392546 2180 ntAPPRIS P2 TSL 5 BASIC21.11■□□□□ 0.97
DDX56Q9NY93 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC21.11■□□□□ 0.97
DDX56Q9NY93 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
DDX56Q9NY93 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC21.11■□□□□ 0.97
DDX56Q9NY93 AR-204ENST00000504326 3615 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
DDX56Q9NY93 GYG1-202ENST00000345003 2052 ntTSL 1 (best) BASIC21.11■□□□□ 0.97
DDX56Q9NY93 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC21.11■□□□□ 0.97
DDX56Q9NY93 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC21.1■□□□□ 0.97
DDX56Q9NY93 ST3GAL5-202ENST00000377332 2165 ntTSL 5 BASIC21.1■□□□□ 0.97
DDX56Q9NY93 ZNF821-211ENST00000564134 1748 ntTSL 5 BASIC21.1■□□□□ 0.97
DDX56Q9NY93 TCF3P1-201ENST00000423021 1937 ntBASIC21.1■□□□□ 0.97
DDX56Q9NY93 PYCR1-216ENST00000619204 1904 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
DDX56Q9NY93 GPR78-201ENST00000382487 1694 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
DDX56Q9NY93 CREB3L3-202ENST00000595923 1491 ntAPPRIS ALT2 TSL 1 (best) BASIC21.1■□□□□ 0.97
DDX56Q9NY93 TM4SF5-201ENST00000270560 708 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
DDX56Q9NY93 HSCB-202ENST00000398941 955 ntTSL 2 BASIC21.1■□□□□ 0.97
DDX56Q9NY93 KRT18P5-201ENST00000436075 1291 ntBASIC21.1■□□□□ 0.97
DDX56Q9NY93 LINC01659-202ENST00000449711 917 ntTSL 3 BASIC21.1■□□□□ 0.97
DDX56Q9NY93 AL356652.1-201ENST00000615962 565 ntBASIC21.1■□□□□ 0.97
DDX56Q9NY93 GRB14-201ENST00000263915 2382 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
DDX56Q9NY93 BRSK2-201ENST00000308219 4089 ntAPPRIS P3 TSL 1 (best) BASIC21.1■□□□□ 0.97
DDX56Q9NY93 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC21.1■□□□□ 0.97
DDX56Q9NY93 ARHGAP11A-205ENST00000563864 2279 ntTSL 5 BASIC21.09■□□□□ 0.97
DDX56Q9NY93 CDCA4-202ENST00000392590 1536 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
DDX56Q9NY93 TACC3-213ENST00000617535 1693 ntTSL 5 BASIC21.09■□□□□ 0.97
DDX56Q9NY93 SMIM10L2B-201ENST00000433425 2737 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
DDX56Q9NY93 RFT1-202ENST00000394738 1800 ntTSL 5 BASIC21.09■□□□□ 0.97
DDX56Q9NY93 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
DDX56Q9NY93 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
DDX56Q9NY93 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC21.09■□□□□ 0.97
DDX56Q9NY93 KLC1-208ENST00000452929 2453 ntTSL 5 BASIC21.09■□□□□ 0.97
DDX56Q9NY93 GGTLC1-202ENST00000286890 1028 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
DDX56Q9NY93 CD58-201ENST00000369487 892 ntAPPRIS ALT2 TSL 1 (best) BASIC21.09■□□□□ 0.97
DDX56Q9NY93 CD58-202ENST00000369489 1098 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
DDX56Q9NY93 IL15RA-201ENST00000379971 588 ntTSL 3 BASIC21.09■□□□□ 0.97
DDX56Q9NY93 ATP6V0B-204ENST00000471859 865 ntTSL 5 BASIC21.09■□□□□ 0.97
DDX56Q9NY93 EDA-209ENST00000525810 843 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
DDX56Q9NY93 EDA-210ENST00000527388 927 ntTSL 1 (best) BASIC21.09■□□□□ 0.97
DDX56Q9NY93 AC005697.1-201ENST00000582441 582 ntAPPRIS P1 TSL 4 BASIC21.09■□□□□ 0.97
DDX56Q9NY93 AC007993.2-201ENST00000592842 521 ntTSL 4 BASIC21.09■□□□□ 0.97
DDX56Q9NY93 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC21.09■□□□□ 0.97
DDX56Q9NY93 PLBD1-201ENST00000240617 2426 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
DDX56Q9NY93 NCLN-205ENST00000590671 2070 ntTSL 2 BASIC21.09■□□□□ 0.97
DDX56Q9NY93 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC21.09■□□□□ 0.97
DDX56Q9NY93 MARCH9-201ENST00000266643 2982 ntAPPRIS P1 TSL 1 (best) BASIC21.09■□□□□ 0.97
DDX56Q9NY93 MAP3K14-AS1-203ENST00000585780 2475 ntTSL 2 BASIC21.09■□□□□ 0.97
DDX56Q9NY93 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC21.08■□□□□ 0.97
DDX56Q9NY93 SOBP-201ENST00000317357 5245 ntAPPRIS P1 TSL 5 BASIC21.08■□□□□ 0.97
DDX56Q9NY93 CYP21A1P-202ENST00000354927 1481 ntBASIC21.08■□□□□ 0.97
DDX56Q9NY93 METRNL-203ENST00000571814 1900 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
DDX56Q9NY93 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC21.08■□□□□ 0.97
DDX56Q9NY93 TSPAN2-201ENST00000369515 793 ntTSL 3 BASIC21.08■□□□□ 0.97
DDX56Q9NY93 GXYLT1P2-201ENST00000433312 1230 ntBASIC21.08■□□□□ 0.97
DDX56Q9NY93 WWOX-218ENST00000627394 894 ntTSL 5 BASIC21.08■□□□□ 0.97
DDX56Q9NY93 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC21.08■□□□□ 0.96
DDX56Q9NY93 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC21.08■□□□□ 0.96
DDX56Q9NY93 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
DDX56Q9NY93 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
DDX56Q9NY93 SLC35A3-222ENST00000640715 1989 ntTSL 5 BASIC21.07■□□□□ 0.96
DDX56Q9NY93 CASP16P-201ENST00000428155 1433 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
DDX56Q9NY93 SOX4-201ENST00000244745 5852 ntAPPRIS P1 BASIC21.07■□□□□ 0.96
DDX56Q9NY93 SPI1-201ENST00000227163 1168 ntAPPRIS ALT1 TSL 2 BASIC21.07■□□□□ 0.96
DDX56Q9NY93 TNFRSF18-201ENST00000328596 851 ntAPPRIS P4 TSL 1 (best) BASIC21.07■□□□□ 0.96
DDX56Q9NY93 AC016769.1-201ENST00000409132 1010 ntBASIC21.07■□□□□ 0.96
DDX56Q9NY93 ARL6IP4-205ENST00000412505 818 ntTSL 5 BASIC21.07■□□□□ 0.96
DDX56Q9NY93 IDNK-204ENST00000454393 1210 ntTSL 3 BASIC21.07■□□□□ 0.96
DDX56Q9NY93 AC108002.2-201ENST00000519782 340 ntTSL 4 BASIC21.07■□□□□ 0.96
DDX56Q9NY93 RPLP2-207ENST00000530797 637 ntAPPRIS P1 TSL 1 (best) BASIC21.07■□□□□ 0.96
DDX56Q9NY93 SLC25A29-212ENST00000555927 960 ntTSL 2 BASIC21.07■□□□□ 0.96
DDX56Q9NY93 COX4I1-216ENST00000568794 794 ntTSL 5 BASIC21.07■□□□□ 0.96
DDX56Q9NY93 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC21.07■□□□□ 0.96
DDX56Q9NY93 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC21.07■□□□□ 0.96
DDX56Q9NY93 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC21.07■□□□□ 0.96
DDX56Q9NY93 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
DDX56Q9NY93 TGIF1-207ENST00000407501 1585 ntAPPRIS P1 TSL 3 BASIC21.06■□□□□ 0.96
DDX56Q9NY93 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
DDX56Q9NY93 WASH6P-203ENST00000460206 1826 ntTSL 5 BASIC21.06■□□□□ 0.96
DDX56Q9NY93 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
DDX56Q9NY93 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC21.06■□□□□ 0.96
DDX56Q9NY93 FAM53A-202ENST00000461064 2159 ntAPPRIS P1 TSL 2 BASIC21.06■□□□□ 0.96
DDX56Q9NY93 KIRREL2-202ENST00000347900 2015 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
DDX56Q9NY93 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC21.06■□□□□ 0.96
DDX56Q9NY93 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC21.06■□□□□ 0.96
DDX56Q9NY93 ZNRF2P2-202ENST00000442865 590 ntTSL 4 BASIC21.06■□□□□ 0.96
DDX56Q9NY93 CMTM8-202ENST00000458535 996 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
DDX56Q9NY93 DHRS4L2-204ENST00000537912 918 ntTSL 2 BASIC21.06■□□□□ 0.96
DDX56Q9NY93 MFSD11-216ENST00000590393 1141 ntBASIC21.06■□□□□ 0.96
DDX56Q9NY93 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC21.06■□□□□ 0.96
DDX56Q9NY93 FAM43B-201ENST00000332947 2572 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
DDX56Q9NY93 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC21.06■□□□□ 0.96
DDX56Q9NY93 RTN1-202ENST00000342503 1703 ntAPPRIS ALT1 TSL 1 (best) BASIC21.06■□□□□ 0.96
DDX56Q9NY93 CLN3-240ENST00000631023 1586 ntTSL 5 BASIC21.06■□□□□ 0.96
DDX56Q9NY93 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
DDX56Q9NY93 ZNF771-201ENST00000319296 2371 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
DDX56Q9NY93 PLEKHA8-203ENST00000396259 2840 ntTSL 2 BASIC21.05■□□□□ 0.96
DDX56Q9NY93 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
DDX56Q9NY93 PCDHAC2-203ENST00000615316 3011 ntBASIC21.05■□□□□ 0.96
DDX56Q9NY93 PARP2-202ENST00000429687 1881 ntAPPRIS ALT2 TSL 1 (best) BASIC21.05■□□□□ 0.96
DDX56Q9NY93 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC21.05■□□□□ 0.96
DDX56Q9NY93 PITPNB-205ENST00000455418 2963 ntAPPRIS ALT1 TSL 5 BASIC21.05■□□□□ 0.96
Retrieved 100 of 98,524 protein–RNA pairs in 20.9 ms