Protein–RNA interactions for Protein: Q9HCM9

TRIM39, E3 ubiquitin-protein ligase TRIM39, humanhuman

Predictions only

Length 518 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM39Q9HCM9 FAM219B-212ENST00000565772 1249 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
TRIM39Q9HCM9 AC006435.1-201ENST00000571775 1065 ntTSL 5 BASIC20.08■□□□□ 0.81
TRIM39Q9HCM9 PSMC3IP-208ENST00000590760 664 ntTSL 1 (best) BASIC20.08■□□□□ 0.81
TRIM39Q9HCM9 BRWD1-AS2-201ENST00000603064 1028 ntBASIC20.08■□□□□ 0.81
TRIM39Q9HCM9 MMP25-204ENST00000612971 1017 ntTSL 5 BASIC20.08■□□□□ 0.81
TRIM39Q9HCM9 MAPK14-210ENST00000622903 1003 ntTSL 5 BASIC20.08■□□□□ 0.81
TRIM39Q9HCM9 AC068987.5-201ENST00000642069 987 ntAPPRIS P1 BASIC20.08■□□□□ 0.81
TRIM39Q9HCM9 DPYSL5-202ENST00000401478 1972 ntAPPRIS P1 TSL 1 (best) BASIC20.08■□□□□ 0.8
TRIM39Q9HCM9 DBX2-201ENST00000332700 2806 ntAPPRIS P1 TSL 2 BASIC20.08■□□□□ 0.8
TRIM39Q9HCM9 FAM151B-201ENST00000282226 1717 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM39Q9HCM9 FGF17-202ENST00000518533 1706 ntTSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM39Q9HCM9 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM39Q9HCM9 FP700111.2-201ENST00000619190 1892 ntBASIC20.07■□□□□ 0.8
TRIM39Q9HCM9 PMPCA-201ENST00000371717 2174 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM39Q9HCM9 AC007225.1-201ENST00000566331 1836 ntBASIC20.07■□□□□ 0.8
TRIM39Q9HCM9 MT3-201ENST00000200691 569 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM39Q9HCM9 RPS14-201ENST00000312037 711 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM39Q9HCM9 NENF-201ENST00000366988 949 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM39Q9HCM9 AP000282.1-201ENST00000454622 682 ntTSL 2 BASIC20.07■□□□□ 0.8
TRIM39Q9HCM9 FADS3-204ENST00000525588 1254 ntTSL 5 BASIC20.07■□□□□ 0.8
TRIM39Q9HCM9 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC20.07■□□□□ 0.8
TRIM39Q9HCM9 LIMD2-206ENST00000578993 602 ntTSL 3 BASIC20.07■□□□□ 0.8
TRIM39Q9HCM9 FAM3A-208ENST00000419205 1763 ntTSL 2 BASIC20.07■□□□□ 0.8
TRIM39Q9HCM9 MTFP1-201ENST00000266263 1370 ntAPPRIS P1 TSL 1 (best) BASIC20.07■□□□□ 0.8
TRIM39Q9HCM9 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC20.06■□□□□ 0.8
TRIM39Q9HCM9 TERF2IP-201ENST00000300086 2118 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM39Q9HCM9 SMTNL2-202ENST00000389313 2280 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM39Q9HCM9 FLT1-209ENST00000639477 6337 ntTSL 5 BASIC20.06■□□□□ 0.8
TRIM39Q9HCM9 FN3K-201ENST00000300784 1434 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM39Q9HCM9 ODF3B-201ENST00000329363 970 ntAPPRIS P1 TSL 5 BASIC20.06■□□□□ 0.8
TRIM39Q9HCM9 BID-202ENST00000342111 854 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM39Q9HCM9 CNIH4-203ENST00000366858 702 ntTSL 3 BASIC20.06■□□□□ 0.8
TRIM39Q9HCM9 SAMD10-201ENST00000369886 2181 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM39Q9HCM9 EGFR-204ENST00000420316 1570 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM39Q9HCM9 ZGPAT-206ENST00000448100 1881 ntAPPRIS P1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM39Q9HCM9 KCNK17-202ENST00000453413 1706 ntAPPRIS ALT2 TSL 5 BASIC20.06■□□□□ 0.8
TRIM39Q9HCM9 GATS-209ENST00000454084 1030 ntTSL 3 BASIC20.06■□□□□ 0.8
TRIM39Q9HCM9 DIMT1-202ENST00000506390 1208 ntTSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM39Q9HCM9 UXS1-203ENST00000409501 1839 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM39Q9HCM9 PARD3-208ENST00000374789 6005 ntAPPRIS P3 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM39Q9HCM9 RELA-201ENST00000308639 2681 ntAPPRIS ALT1 TSL 1 (best) BASIC20.06■□□□□ 0.8
TRIM39Q9HCM9 SMPDL3A-203ENST00000539041 1755 ntTSL 2 BASIC20.06■□□□□ 0.8
TRIM39Q9HCM9 ADAMTS2-202ENST00000274609 2044 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM39Q9HCM9 PAQR6-213ENST00000612424 2037 ntTSL 2 BASIC20.05■□□□□ 0.8
TRIM39Q9HCM9 DTX4-201ENST00000227451 5642 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM39Q9HCM9 LAYN-202ENST00000375615 1836 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM39Q9HCM9 ASMTL-AS1-203ENST00000425740 840 ntTSL 2 BASIC20.05■□□□□ 0.8
TRIM39Q9HCM9 UNC93B6-201ENST00000525262 1143 ntTSL 5 BASIC20.05■□□□□ 0.8
TRIM39Q9HCM9 CD99P1-205ENST00000527459 561 ntBASIC20.05■□□□□ 0.8
TRIM39Q9HCM9 PLEKHB1-216ENST00000543085 632 ntTSL 3 BASIC20.05■□□□□ 0.8
TRIM39Q9HCM9 ASGR1-204ENST00000572879 797 ntTSL 5 BASIC20.05■□□□□ 0.8
TRIM39Q9HCM9 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM39Q9HCM9 CFAP97-205ENST00000514798 2895 ntTSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM39Q9HCM9 STK25-205ENST00000405883 1904 ntTSL 2 BASIC20.05■□□□□ 0.8
TRIM39Q9HCM9 PLLP-201ENST00000219207 1512 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM39Q9HCM9 SACM1L-202ENST00000418611 2164 ntTSL 2 BASIC20.05■□□□□ 0.8
TRIM39Q9HCM9 NDUFAF3-202ENST00000326925 2012 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM39Q9HCM9 THEM6-201ENST00000336138 2259 ntAPPRIS P1 TSL 1 (best) BASIC20.05■□□□□ 0.8
TRIM39Q9HCM9 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC20.05■□□□□ 0.8
TRIM39Q9HCM9 C22orf39-206ENST00000611555 1977 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM39Q9HCM9 RENBP-201ENST00000369997 1322 ntTSL 5 BASIC20.04■□□□□ 0.8
TRIM39Q9HCM9 CCDC88B-203ENST00000359902 2326 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM39Q9HCM9 RARA-201ENST00000254066 2414 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM39Q9HCM9 FAM118B-209ENST00000533050 2402 ntAPPRIS P3 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM39Q9HCM9 BID-215ENST00000622694 2199 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM39Q9HCM9 PAQR4-201ENST00000293978 2644 ntTSL 2 BASIC20.04■□□□□ 0.8
TRIM39Q9HCM9 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM39Q9HCM9 ZNF48-201ENST00000320159 3234 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM39Q9HCM9 SDHC-201ENST00000342751 1127 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM39Q9HCM9 HFE2-202ENST00000357836 2123 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM39Q9HCM9 CCDC103-202ENST00000410006 921 ntAPPRIS P1 TSL 2 BASIC20.04■□□□□ 0.8
TRIM39Q9HCM9 AF274858.3-202ENST00000569906 755 ntTSL 3 BASIC20.04■□□□□ 0.8
TRIM39Q9HCM9 TXNL4A-203ENST00000585474 1185 ntTSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM39Q9HCM9 PSME3-210ENST00000590720 998 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM39Q9HCM9 NECAB3-201ENST00000246190 1989 ntTSL 5 BASIC20.04■□□□□ 0.8
TRIM39Q9HCM9 OSCAR-208ENST00000611261 2061 ntAPPRIS P4 TSL 5 BASIC20.04■□□□□ 0.8
TRIM39Q9HCM9 CREB3-201ENST00000353704 1832 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM39Q9HCM9 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC20.04■□□□□ 0.8
TRIM39Q9HCM9 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM39Q9HCM9 QTRT1-201ENST00000250237 1317 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM39Q9HCM9 AC083805.3-201ENST00000619560 1315 ntTSL 3 BASIC20.03■□□□□ 0.8
TRIM39Q9HCM9 LHX9-206ENST00000561173 2144 ntTSL 5 BASIC20.03■□□□□ 0.8
TRIM39Q9HCM9 PADI2-201ENST00000375481 1607 ntTSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM39Q9HCM9 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC20.03■□□□□ 0.8
TRIM39Q9HCM9 CFC1-201ENST00000259216 1046 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM39Q9HCM9 CFC1B-201ENST00000281882 1071 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM39Q9HCM9 CDC42EP5-201ENST00000301200 864 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM39Q9HCM9 MFF-205ENST00000354503 1085 ntTSL 2 BASIC20.03■□□□□ 0.8
TRIM39Q9HCM9 ANKRD39-201ENST00000393537 976 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM39Q9HCM9 AC034102.6-201ENST00000550947 559 ntTSL 4 BASIC20.03■□□□□ 0.8
TRIM39Q9HCM9 MTURN-201ENST00000324453 5937 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM39Q9HCM9 BZW1-202ENST00000409226 2455 ntTSL 2 BASIC20.03■□□□□ 0.8
TRIM39Q9HCM9 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM39Q9HCM9 NEUROG1-201ENST00000314744 1668 ntAPPRIS P1 BASIC20.03■□□□□ 0.8
TRIM39Q9HCM9 AC013269.1-201ENST00000409259 1653 ntAPPRIS P1 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM39Q9HCM9 TISP43-206ENST00000623376 1653 ntAPPRIS ALT2 TSL 1 (best) BASIC20.03■□□□□ 0.8
TRIM39Q9HCM9 S1PR5-202ENST00000439028 2191 ntAPPRIS P1 TSL 2 BASIC20.02■□□□□ 0.8
TRIM39Q9HCM9 PHB2-201ENST00000399433 1308 ntAPPRIS ALT1 TSL 2 BASIC20.02■□□□□ 0.8
TRIM39Q9HCM9 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC20.02■□□□□ 0.8
TRIM39Q9HCM9 DNAJA4-202ENST00000394852 3116 ntAPPRIS P1 TSL 1 (best) BASIC20.02■□□□□ 0.8
Retrieved 100 of 98,524 protein–RNA pairs in 28.1 ms