Protein–RNA interactions for Protein: Q9BXS0

COL25A1, Collagen alpha-1(XXV) chain, humanhuman

Predicted RBP Predictions only

Length 654 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
COL25A1Q9BXS0 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC20.81■□□□□ 0.92
COL25A1Q9BXS0 LINC01960-201ENST00000563759 1884 ntBASIC20.81■□□□□ 0.92
COL25A1Q9BXS0 RAB28-202ENST00000330852 1715 ntAPPRIS ALT1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL25A1Q9BXS0 RNH1-206ENST00000438658 1725 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL25A1Q9BXS0 DDAH2-211ENST00000375787 1330 ntAPPRIS P1 TSL 5 BASIC20.81■□□□□ 0.92
COL25A1Q9BXS0 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL25A1Q9BXS0 GPRC5B-210ENST00000569847 1830 ntAPPRIS P2 TSL 2 BASIC20.81■□□□□ 0.92
COL25A1Q9BXS0 CXorf40A-204ENST00000423421 1403 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL25A1Q9BXS0 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL25A1Q9BXS0 AC007383.3-201ENST00000453039 1411 ntTSL 3 BASIC20.81■□□□□ 0.92
COL25A1Q9BXS0 CRADD-202ENST00000542893 1403 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL25A1Q9BXS0 HECA-201ENST00000367658 5614 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL25A1Q9BXS0 TMEM88-201ENST00000301599 875 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
COL25A1Q9BXS0 RTL8A-201ENST00000370775 1244 ntAPPRIS P1 BASIC20.81■□□□□ 0.92
COL25A1Q9BXS0 PMS2P1-201ENST00000431037 1228 ntBASIC20.81■□□□□ 0.92
COL25A1Q9BXS0 AL365226.1-201ENST00000448363 349 ntTSL 2 BASIC20.81■□□□□ 0.92
COL25A1Q9BXS0 AC092865.5-201ENST00000545435 363 ntBASIC20.81■□□□□ 0.92
COL25A1Q9BXS0 FP475955.1-201ENST00000624937 553 ntTSL 4 BASIC20.81■□□□□ 0.92
COL25A1Q9BXS0 ESR1-210ENST00000456483 1368 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
COL25A1Q9BXS0 TEX30-205ENST00000376029 959 ntTSL 2 BASIC20.8■□□□□ 0.92
COL25A1Q9BXS0 SERF1B-202ENST00000380751 703 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL25A1Q9BXS0 SELENOM-201ENST00000400299 694 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL25A1Q9BXS0 SATB1-AS1-201ENST00000414198 737 ntTSL 2 BASIC20.8■□□□□ 0.92
COL25A1Q9BXS0 PLPP5-202ENST00000422581 853 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
COL25A1Q9BXS0 KRT18P38-201ENST00000449496 1282 ntBASIC20.8■□□□□ 0.92
COL25A1Q9BXS0 MFSD4A-206ENST00000489709 1136 ntTSL 5 BASIC20.8■□□□□ 0.92
COL25A1Q9BXS0 PRSS44-201ENST00000515154 1146 ntBASIC20.8■□□□□ 0.92
COL25A1Q9BXS0 AC127526.4-201ENST00000527970 983 ntTSL 3 BASIC20.8■□□□□ 0.92
COL25A1Q9BXS0 REEP1-207ENST00000535845 1196 ntTSL 2 BASIC20.8■□□□□ 0.92
COL25A1Q9BXS0 STAC3-202ENST00000546246 1014 ntTSL 2 BASIC20.8■□□□□ 0.92
COL25A1Q9BXS0 KRT73-AS1-202ENST00000551089 563 ntTSL 4 BASIC20.8■□□□□ 0.92
COL25A1Q9BXS0 AC092329.2-201ENST00000598402 547 ntBASIC20.8■□□□□ 0.92
COL25A1Q9BXS0 IFNL4P1-201ENST00000607083 540 ntBASIC20.8■□□□□ 0.92
COL25A1Q9BXS0 AC120114.3-201ENST00000611923 658 ntBASIC20.8■□□□□ 0.92
COL25A1Q9BXS0 SSBP1-215ENST00000612337 884 ntAPPRIS P1 TSL 2 BASIC20.8■□□□□ 0.92
COL25A1Q9BXS0 TBX1-202ENST00000332710 2084 ntAPPRIS P4 TSL 1 (best) BASIC20.8■□□□□ 0.92
COL25A1Q9BXS0 AC124283.5-201ENST00000624661 1809 ntBASIC20.79■□□□□ 0.92
COL25A1Q9BXS0 LSM4-203ENST00000593829 1908 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL25A1Q9BXS0 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL25A1Q9BXS0 TREX2-204ENST00000370212 861 ntTSL 5 BASIC20.79■□□□□ 0.92
COL25A1Q9BXS0 TREX2-207ENST00000393862 907 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
COL25A1Q9BXS0 CCT7-202ENST00000398422 1234 ntTSL 2 BASIC20.79■□□□□ 0.92
COL25A1Q9BXS0 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.79■□□□□ 0.92
COL25A1Q9BXS0 AL139424.1-201ENST00000607572 797 ntBASIC20.79■□□□□ 0.92
COL25A1Q9BXS0 ZNF771-202ENST00000434417 1454 ntAPPRIS P1 TSL 2 BASIC20.79■□□□□ 0.92
COL25A1Q9BXS0 SNX7-205ENST00000529992 1589 ntTSL 2 BASIC20.79■□□□□ 0.92
COL25A1Q9BXS0 FDXR-219ENST00000583917 1762 ntTSL 5 BASIC20.79■□□□□ 0.92
COL25A1Q9BXS0 CD8B-203ENST00000390655 1417 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL25A1Q9BXS0 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL25A1Q9BXS0 LRP5L-203ENST00000444995 1714 ntAPPRIS ALT2 TSL 5 BASIC20.78■□□□□ 0.92
COL25A1Q9BXS0 TSGA10IP-203ENST00000532620 1925 ntAPPRIS P1 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL25A1Q9BXS0 NELFE-202ENST00000375429 1584 ntAPPRIS P2 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL25A1Q9BXS0 IFNLR1-202ENST00000327575 1476 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL25A1Q9BXS0 RTN4-207ENST00000402434 1456 ntTSL 5 BASIC20.78■□□□□ 0.92
COL25A1Q9BXS0 HIST1H2APS4-201ENST00000362070 348 ntBASIC20.78■□□□□ 0.92
COL25A1Q9BXS0 EFCAB2-203ENST00000366523 1233 ntAPPRIS P1 TSL 3 BASIC20.78■□□□□ 0.92
COL25A1Q9BXS0 AP001058.1-201ENST00000423967 463 ntTSL 2 BASIC20.78■□□□□ 0.92
COL25A1Q9BXS0 NDUFV2-207ENST00000497577 868 ntTSL 2 BASIC20.78■□□□□ 0.92
COL25A1Q9BXS0 GRP-204ENST00000529320 824 ntAPPRIS ALT2 TSL 1 (best) BASIC20.78■□□□□ 0.92
COL25A1Q9BXS0 AL110118.2-203ENST00000557574 554 ntAPPRIS P1 TSL 4 BASIC20.78■□□□□ 0.92
COL25A1Q9BXS0 ACYP2-209ENST00000607452 831 ntTSL 2 BASIC20.78■□□□□ 0.92
COL25A1Q9BXS0 AP000547.2-201ENST00000609641 661 ntTSL 5 BASIC20.78■□□□□ 0.92
COL25A1Q9BXS0 AL445675.2-201ENST00000620291 557 ntBASIC20.78■□□□□ 0.92
COL25A1Q9BXS0 FPGS-221ENST00000630236 2160 ntTSL 5 BASIC20.78■□□□□ 0.92
COL25A1Q9BXS0 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC20.77■□□□□ 0.92
COL25A1Q9BXS0 PCSK6-201ENST00000331826 2309 ntTSL 5 BASIC20.77■□□□□ 0.92
COL25A1Q9BXS0 PICALM-202ENST00000393346 2340 ntAPPRIS P3 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL25A1Q9BXS0 GCSH-201ENST00000315467 1597 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL25A1Q9BXS0 FAM3A-203ENST00000369641 1359 ntTSL 5 BASIC20.77■□□□□ 0.92
COL25A1Q9BXS0 GUCA2B-201ENST00000372581 597 ntAPPRIS P1 TSL 1 (best) BASIC20.77■□□□□ 0.92
COL25A1Q9BXS0 AC079781.3-201ENST00000449110 356 ntBASIC20.77■□□□□ 0.92
COL25A1Q9BXS0 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC20.77■□□□□ 0.92
COL25A1Q9BXS0 AC106795.1-205ENST00000512851 1056 ntBASIC20.77■□□□□ 0.92
COL25A1Q9BXS0 NDUFB10-202ENST00000543683 830 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL25A1Q9BXS0 PNN-205ENST00000556530 601 ntTSL 2 BASIC20.77■□□□□ 0.92
COL25A1Q9BXS0 AL441883.1-201ENST00000566170 1045 ntBASIC20.77■□□□□ 0.92
COL25A1Q9BXS0 HOXB8-203ENST00000576562 743 ntAPPRIS ALT1 TSL 2 BASIC20.77■□□□□ 0.92
COL25A1Q9BXS0 TBCB-205ENST00000585746 875 ntTSL 3 BASIC20.77■□□□□ 0.92
COL25A1Q9BXS0 SLC25A6P4-201ENST00000586535 553 ntBASIC20.77■□□□□ 0.92
COL25A1Q9BXS0 LINC00454-206ENST00000609861 841 ntTSL 5 BASIC20.77■□□□□ 0.92
COL25A1Q9BXS0 AC116562.4-202ENST00000641738 218 ntBASIC20.77■□□□□ 0.92
COL25A1Q9BXS0 PHLDB3-207ENST00000599242 2286 ntTSL 1 (best) BASIC20.77■□□□□ 0.92
COL25A1Q9BXS0 TUBA8-201ENST00000316027 1518 ntTSL 2 BASIC20.77■□□□□ 0.92
COL25A1Q9BXS0 TMCO6-201ENST00000252100 1834 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
COL25A1Q9BXS0 DOC2A-218ENST00000616445 2065 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL25A1Q9BXS0 NR2F2-204ENST00000453270 1712 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
COL25A1Q9BXS0 HBQ1-201ENST00000199708 536 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL25A1Q9BXS0 ROMO1-202ENST00000374072 350 ntTSL 5 BASIC20.76■□□□□ 0.91
COL25A1Q9BXS0 UQCRQ-201ENST00000378665 586 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL25A1Q9BXS0 TRPT1-202ENST00000394546 1058 ntAPPRIS ALT1 TSL 5 BASIC20.76■□□□□ 0.91
COL25A1Q9BXS0 C2orf82-202ENST00000409230 663 ntAPPRIS P2 TSL 3 BASIC20.76■□□□□ 0.91
COL25A1Q9BXS0 MMP24-AS1-201ENST00000424358 867 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
COL25A1Q9BXS0 MMP24-AS1-209ENST00000456790 712 ntAPPRIS P1 TSL 2 BASIC20.76■□□□□ 0.91
COL25A1Q9BXS0 RAB6B-203ENST00000469959 500 ntTSL 3 BASIC20.76■□□□□ 0.91
COL25A1Q9BXS0 AMACR-208ENST00000512079 858 ntTSL 1 (best) BASIC20.76■□□□□ 0.91
COL25A1Q9BXS0 TRPT1-210ENST00000541278 941 ntTSL 2 BASIC20.76■□□□□ 0.91
COL25A1Q9BXS0 RPL27-206ENST00000589913 697 ntAPPRIS P1 TSL 1 (best) BASIC20.76■□□□□ 0.91
COL25A1Q9BXS0 NTF4-201ENST00000593537 932 ntAPPRIS P1 BASIC20.76■□□□□ 0.91
COL25A1Q9BXS0 PAGR1-201ENST00000320330 1702 ntAPPRIS P1 TSL 1 (best) BASIC20.75■□□□□ 0.91
COL25A1Q9BXS0 DOK3-205ENST00000501403 1872 ntAPPRIS P1 TSL 5 BASIC20.75■□□□□ 0.91
Retrieved 100 of 98,524 protein–RNA pairs in 29.7 ms