Protein–RNA interactions for Protein: Q9BUN5

CCDC28B, Coiled-coil domain-containing protein 28B, humanhuman

Predictions only

Length 200 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28BQ9BUN5 ZNF385B-204ENST00000410066 3288 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC28BQ9BUN5 FGFR3-210ENST00000613647 4438 ntTSL 5 BASIC19.68■□□□□ 0.74
CCDC28BQ9BUN5 KMT5B-204ENST00000402185 1881 ntTSL 2 BASIC19.68■□□□□ 0.74
CCDC28BQ9BUN5 CDC42EP1-201ENST00000249014 2181 ntAPPRIS P2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC28BQ9BUN5 P3H4-201ENST00000355468 2791 ntAPPRIS P2 TSL 2 BASIC19.68■□□□□ 0.74
CCDC28BQ9BUN5 COL13A1-205ENST00000398978 3093 ntAPPRIS P4 TSL 5 BASIC19.68■□□□□ 0.74
CCDC28BQ9BUN5 C11orf96-201ENST00000339446 1308 ntTSL 5 BASIC19.68■□□□□ 0.74
CCDC28BQ9BUN5 DIAPH1-203ENST00000389057 5762 ntAPPRIS ALT2 TSL 5 BASIC19.68■□□□□ 0.74
CCDC28BQ9BUN5 GJB6-204ENST00000400066 1927 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC28BQ9BUN5 LRRC1-202ENST00000370888 3180 ntAPPRIS P1 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC28BQ9BUN5 MID2-201ENST00000262843 2876 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC28BQ9BUN5 VRK2-207ENST00000440705 1676 ntAPPRIS ALT2 TSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC28BQ9BUN5 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC19.68■□□□□ 0.74
CCDC28BQ9BUN5 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC19.68■□□□□ 0.74
CCDC28BQ9BUN5 KRT16P2-201ENST00000414673 1423 ntBASIC19.68■□□□□ 0.74
CCDC28BQ9BUN5 AC138356.1-201ENST00000330539 2086 ntTSL 2 BASIC19.67■□□□□ 0.74
CCDC28BQ9BUN5 MTUS2-202ENST00000380808 1793 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC28BQ9BUN5 H19-201ENST00000411754 1788 ntTSL 5 BASIC19.67■□□□□ 0.74
CCDC28BQ9BUN5 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC19.67■□□□□ 0.74
CCDC28BQ9BUN5 ECHDC1-214ENST00000474289 2443 ntAPPRIS P3 TSL 5 BASIC19.67■□□□□ 0.74
CCDC28BQ9BUN5 SPR-201ENST00000234454 1480 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC28BQ9BUN5 TRMU-201ENST00000290846 1940 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC28BQ9BUN5 TMEM51-201ENST00000376008 1931 ntAPPRIS P1 TSL 2 BASIC19.67■□□□□ 0.74
CCDC28BQ9BUN5 PCBP3-203ENST00000400308 1911 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC28BQ9BUN5 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC19.67■□□□□ 0.74
CCDC28BQ9BUN5 MIF-201ENST00000215754 939 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC28BQ9BUN5 RARRES2-201ENST00000223271 740 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC28BQ9BUN5 DNPH1-201ENST00000230431 657 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC28BQ9BUN5 CDKN2A-206ENST00000494262 989 ntTSL 3 BASIC19.67■□□□□ 0.74
CCDC28BQ9BUN5 ZNF419-210ENST00000520540 568 ntTSL 4 BASIC19.67■□□□□ 0.74
CCDC28BQ9BUN5 AC027682.1-201ENST00000562846 899 ntBASIC19.67■□□□□ 0.74
CCDC28BQ9BUN5 AC092902.2-206ENST00000625484 846 ntTSL 5 BASIC19.67■□□□□ 0.74
CCDC28BQ9BUN5 BAG1-212ENST00000641048 1038 ntAPPRIS P3 BASIC19.67■□□□□ 0.74
CCDC28BQ9BUN5 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC28BQ9BUN5 SLC30A5-201ENST00000380860 1317 ntTSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC28BQ9BUN5 MPST-204ENST00000404393 1329 ntTSL 5 BASIC19.67■□□□□ 0.74
CCDC28BQ9BUN5 KLC2-204ENST00000394067 2898 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC28BQ9BUN5 IKZF1-209ENST00000438033 1748 ntTSL 2 BASIC19.67■□□□□ 0.74
CCDC28BQ9BUN5 KIF22-201ENST00000160827 2113 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC28BQ9BUN5 HTRA3-201ENST00000307358 2541 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC28BQ9BUN5 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC28BQ9BUN5 AC116050.2-201ENST00000612102 1779 ntBASIC19.67■□□□□ 0.74
CCDC28BQ9BUN5 IDUA-201ENST00000247933 2163 ntAPPRIS P1 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC28BQ9BUN5 TINAGL1-201ENST00000271064 2187 ntAPPRIS P3 TSL 1 (best) BASIC19.67■□□□□ 0.74
CCDC28BQ9BUN5 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC28BQ9BUN5 ST7-OT4-201ENST00000397750 1576 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC28BQ9BUN5 SLC25A46-202ENST00000447245 1575 ntTSL 2 BASIC19.66■□□□□ 0.74
CCDC28BQ9BUN5 ACOT2-204ENST00000613168 1553 ntAPPRIS P5 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC28BQ9BUN5 LAMC3-202ENST00000361069 6133 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
CCDC28BQ9BUN5 WNT7B-204ENST00000410089 2202 ntTSL 5 BASIC19.66■□□□□ 0.74
CCDC28BQ9BUN5 CCT4-204ENST00000544079 2261 ntTSL 2 BASIC19.66■□□□□ 0.74
CCDC28BQ9BUN5 HES3-201ENST00000377898 697 ntAPPRIS P1 TSL 2 BASIC19.66■□□□□ 0.74
CCDC28BQ9BUN5 AC093249.6-202ENST00000568500 1142 ntTSL 2 BASIC19.66■□□□□ 0.74
CCDC28BQ9BUN5 ZNF584-205ENST00000596281 575 ntTSL 2 BASIC19.66■□□□□ 0.74
CCDC28BQ9BUN5 NBPF26-209ENST00000624419 1133 ntTSL 5 BASIC19.66■□□□□ 0.74
CCDC28BQ9BUN5 ST8SIA1-204ENST00000404299 1920 ntTSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC28BQ9BUN5 CDC42EP2-201ENST00000279249 2023 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC28BQ9BUN5 WFIKKN1-201ENST00000319070 2028 ntAPPRIS P1 TSL 1 (best) BASIC19.66■□□□□ 0.74
CCDC28BQ9BUN5 CASP16P-202ENST00000575497 2161 ntTSL 2 BASIC19.66■□□□□ 0.74
CCDC28BQ9BUN5 CDC42BPB-201ENST00000361246 6758 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC28BQ9BUN5 ADAP2-201ENST00000330889 2934 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC28BQ9BUN5 PPTC7-201ENST00000354300 4996 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC28BQ9BUN5 LZTS3-201ENST00000329152 5257 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC28BQ9BUN5 RBM45-201ENST00000286070 1785 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC28BQ9BUN5 FMR1-AS1-202ENST00000596112 1845 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC28BQ9BUN5 ACTR5-201ENST00000243903 2565 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC28BQ9BUN5 GLS-201ENST00000320717 4834 ntAPPRIS P3 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC28BQ9BUN5 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC28BQ9BUN5 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC19.65■□□□□ 0.74
CCDC28BQ9BUN5 PLEKHM2-202ENST00000375799 4122 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC28BQ9BUN5 HTR1E-201ENST00000305344 2052 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC28BQ9BUN5 CTAG2-202ENST00000369585 748 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC28BQ9BUN5 CAMTA1-208ENST00000473578 567 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC28BQ9BUN5 AC012414.1-201ENST00000556676 535 ntBASIC19.65■□□□□ 0.74
CCDC28BQ9BUN5 AC006538.2-201ENST00000586572 543 ntAPPRIS P1 TSL 4 BASIC19.65■□□□□ 0.74
CCDC28BQ9BUN5 CLDND1-201ENST00000341181 2161 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC28BQ9BUN5 AL691447.2-201ENST00000454869 2162 ntTSL 2 BASIC19.65■□□□□ 0.74
CCDC28BQ9BUN5 DOCK9-206ENST00000427887 4176 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC28BQ9BUN5 ZBTB42-202ENST00000555360 1411 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC28BQ9BUN5 KRT8-217ENST00000619952 2437 ntTSL 2 BASIC19.65■□□□□ 0.74
CCDC28BQ9BUN5 BST1-201ENST00000265016 1480 ntAPPRIS P2 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC28BQ9BUN5 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC19.65■□□□□ 0.74
CCDC28BQ9BUN5 REPS1-203ENST00000409812 2511 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC28BQ9BUN5 UBTF-203ENST00000393606 2683 ntTSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC28BQ9BUN5 CXCR3-202ENST00000373693 1624 ntAPPRIS P1 TSL 1 (best) BASIC19.65■□□□□ 0.74
CCDC28BQ9BUN5 AC005224.2-201ENST00000571192 1885 ntTSL 2 BASIC19.65■□□□□ 0.74
CCDC28BQ9BUN5 KCNMA1-293ENST00000640969 5789 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.74
CCDC28BQ9BUN5 KCNH2-202ENST00000330883 3267 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
CCDC28BQ9BUN5 USP36-203ENST00000542802 6063 ntAPPRIS P2 TSL 1 (best) BASIC19.64■□□□□ 0.74
CCDC28BQ9BUN5 MFSD1-219ENST00000622669 2361 ntTSL 1 (best) BASIC19.64■□□□□ 0.74
CCDC28BQ9BUN5 TRAPPC12-202ENST00000382110 2483 ntAPPRIS P2 TSL 2 BASIC19.64■□□□□ 0.74
CCDC28BQ9BUN5 EHBP1-209ENST00000431489 5076 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC28BQ9BUN5 CACNA1B-201ENST00000277549 7158 ntAPPRIS ALT2 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC28BQ9BUN5 CACNA1B-202ENST00000277551 7158 ntAPPRIS ALT2 TSL 5 BASIC19.64■□□□□ 0.73
CCDC28BQ9BUN5 NUDT14-202ENST00000392568 845 ntAPPRIS P1 TSL 1 (best) BASIC19.64■□□□□ 0.73
CCDC28BQ9BUN5 RALB-203ENST00000420510 1252 ntAPPRIS P1 TSL 2 BASIC19.64■□□□□ 0.73
CCDC28BQ9BUN5 AL355987.3-201ENST00000456614 735 ntAPPRIS P1 TSL 4 BASIC19.64■□□□□ 0.73
CCDC28BQ9BUN5 TPRG1LP1-201ENST00000598702 760 ntBASIC19.64■□□□□ 0.73
CCDC28BQ9BUN5 AC093762.1-201ENST00000641981 837 ntAPPRIS P1 BASIC19.64■□□□□ 0.73
CCDC28BQ9BUN5 PDLIM5-205ENST00000380180 2020 ntTSL 1 (best) BASIC19.64■□□□□ 0.73
Retrieved 100 of 98,524 protein–RNA pairs in 41.3 ms