Protein–RNA interactions for Protein: Q96AY4

TTC28, Tetratricopeptide repeat protein 28, humanhuman

Predictions only

Length 2,481 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
TTC28Q96AY4 PBX4-201ENST00000251203 1724 ntAPPRIS P1 TSL 1 (best) BASIC20.85■□□□□ 0.93
TTC28Q96AY4 ZNF365-206ENST00000395255 1674 ntTSL 1 (best) BASIC20.85■□□□□ 0.93
TTC28Q96AY4 STARD4-203ENST00000502322 1467 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
TTC28Q96AY4 NAA20-203ENST00000398602 1604 ntTSL 5 BASIC20.84■□□□□ 0.93
TTC28Q96AY4 SRPK3-205ENST00000393786 1900 ntAPPRIS ALT2 TSL 1 (best) BASIC20.84■□□□□ 0.93
TTC28Q96AY4 TMEM223-201ENST00000307366 1288 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TTC28Q96AY4 DAP-202ENST00000432074 1048 ntTSL 2 BASIC20.84■□□□□ 0.93
TTC28Q96AY4 CAPN5-206ENST00000531028 534 ntTSL 5 BASIC20.84■□□□□ 0.93
TTC28Q96AY4 BCL7C-202ENST00000380317 2409 ntTSL 1 (best) BASIC20.84■□□□□ 0.93
TTC28Q96AY4 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TTC28Q96AY4 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TTC28Q96AY4 NAAA-206ENST00000507956 1300 ntAPPRIS ALT2 TSL 2 BASIC20.84■□□□□ 0.93
TTC28Q96AY4 APBB3-216ENST00000511201 1014 ntTSL 5 BASIC20.84■□□□□ 0.93
TTC28Q96AY4 AC079385.1-201ENST00000551505 570 ntTSL 4 BASIC20.84■□□□□ 0.93
TTC28Q96AY4 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC20.84■□□□□ 0.93
TTC28Q96AY4 AL031985.4-201ENST00000642138 673 ntBASIC20.84■□□□□ 0.93
TTC28Q96AY4 NREP-202ENST00000379671 2581 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TTC28Q96AY4 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC20.84■□□□□ 0.93
TTC28Q96AY4 METTL21A-201ENST00000272839 1210 ntTSL 5 BASIC20.83■□□□□ 0.93
TTC28Q96AY4 ANKRD20A18P-201ENST00000359341 492 ntBASIC20.83■□□□□ 0.93
TTC28Q96AY4 CD1E-210ENST00000368165 1003 ntAPPRIS ALT2 TSL 1 (best) BASIC20.83■□□□□ 0.93
TTC28Q96AY4 TMA7-201ENST00000438607 561 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
TTC28Q96AY4 CD1E-214ENST00000452291 745 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
TTC28Q96AY4 CARHSP1-205ENST00000562843 843 ntTSL 2 BASIC20.83■□□□□ 0.93
TTC28Q96AY4 SYNGR2-202ENST00000585591 949 ntAPPRIS P1 TSL 5 BASIC20.83■□□□□ 0.93
TTC28Q96AY4 CR392000.1-201ENST00000624770 1228 ntBASIC20.83■□□□□ 0.93
TTC28Q96AY4 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.93
TTC28Q96AY4 OSR2-202ENST00000435298 1736 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
TTC28Q96AY4 NDUFA10-214ENST00000620965 1489 ntAPPRIS ALT1 TSL 5 BASIC20.83■□□□□ 0.93
TTC28Q96AY4 LSM8-203ENST00000422760 1920 ntTSL 1 (best) BASIC20.83■□□□□ 0.93
TTC28Q96AY4 COMMD7-202ENST00000446419 1343 ntAPPRIS ALT1 TSL 2 BASIC20.83■□□□□ 0.93
TTC28Q96AY4 SCAMP3-202ENST00000355379 1537 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
TTC28Q96AY4 TMEM160-201ENST00000253047 663 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
TTC28Q96AY4 MCRIP1-201ENST00000455127 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
TTC28Q96AY4 CSRP1-214ENST00000531916 890 ntTSL 5 BASIC20.83■□□□□ 0.92
TTC28Q96AY4 STX10-204ENST00000587230 1136 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
TTC28Q96AY4 GCH1-205ENST00000536224 1805 ntTSL 1 (best) BASIC20.83■□□□□ 0.92
TTC28Q96AY4 PRMT1-201ENST00000391851 1393 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
TTC28Q96AY4 MAP1LC3A-201ENST00000360668 1574 ntAPPRIS P1 TSL 1 (best) BASIC20.83■□□□□ 0.92
TTC28Q96AY4 ABCB10P4-201ENST00000566803 2184 ntBASIC20.82■□□□□ 0.92
TTC28Q96AY4 CYB561-205ENST00000542042 1302 ntTSL 2 BASIC20.82■□□□□ 0.92
TTC28Q96AY4 SIX2-201ENST00000303077 2205 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TTC28Q96AY4 MADCAM1-203ENST00000382683 603 ntTSL 1 (best) BASIC20.82■□□□□ 0.92
TTC28Q96AY4 RNPS1-224ENST00000569598 918 ntTSL 5 BASIC20.82■□□□□ 0.92
TTC28Q96AY4 PRR29-207ENST00000580752 458 ntTSL 3 BASIC20.82■□□□□ 0.92
TTC28Q96AY4 AL772307.1-201ENST00000639363 1066 ntTSL 2 BASIC20.82■□□□□ 0.92
TTC28Q96AY4 NOXO1-202ENST00000356120 1539 ntAPPRIS P3 TSL 1 (best) BASIC20.82■□□□□ 0.92
TTC28Q96AY4 LRRC3B-201ENST00000396641 1696 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TTC28Q96AY4 PDZD7-203ENST00000470414 1057 ntTSL 2 BASIC20.82■□□□□ 0.92
TTC28Q96AY4 LAT-211ENST00000566177 786 ntAPPRIS ALT2 TSL 1 (best) BASIC20.82■□□□□ 0.92
TTC28Q96AY4 AC003688.1-201ENST00000577138 489 ntAPPRIS P1 TSL 3 BASIC20.82■□□□□ 0.92
TTC28Q96AY4 AC243773.2-203ENST00000612281 640 ntTSL 3 BASIC20.82■□□□□ 0.92
TTC28Q96AY4 GXYLT1P4-201ENST00000613576 1192 ntBASIC20.82■□□□□ 0.92
TTC28Q96AY4 SMN2-213ENST00000614240 804 ntAPPRIS ALT2 TSL 5 BASIC20.82■□□□□ 0.92
TTC28Q96AY4 SRI-201ENST00000265729 2010 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TTC28Q96AY4 CNPY3-201ENST00000372836 1704 ntAPPRIS P1 TSL 1 (best) BASIC20.82■□□□□ 0.92
TTC28Q96AY4 SLC25A51-202ENST00000377716 1691 ntAPPRIS P1 TSL 3 BASIC20.81■□□□□ 0.92
TTC28Q96AY4 SNCB-205ENST00000510387 730 ntAPPRIS P1 TSL 2 BASIC20.81■□□□□ 0.92
TTC28Q96AY4 AZIN1-AS1-214ENST00000522850 473 ntTSL 3 BASIC20.81■□□□□ 0.92
TTC28Q96AY4 FNTA-208ENST00000529687 1950 ntTSL 2 BASIC20.81■□□□□ 0.92
TTC28Q96AY4 MPV17L2-204ENST00000599612 1408 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TTC28Q96AY4 CCR10-203ENST00000591765 1942 ntTSL 3 BASIC20.81■□□□□ 0.92
TTC28Q96AY4 AC137767.1-201ENST00000602918 1920 ntBASIC20.81■□□□□ 0.92
TTC28Q96AY4 SLC9A3R2-201ENST00000424542 2194 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TTC28Q96AY4 ZNF205-202ENST00000382192 2062 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TTC28Q96AY4 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC20.81■□□□□ 0.92
TTC28Q96AY4 HOXA6-201ENST00000222728 989 ntAPPRIS P1 TSL 1 (best) BASIC20.81■□□□□ 0.92
TTC28Q96AY4 CENPX-201ENST00000306704 751 ntTSL 1 (best) BASIC20.81■□□□□ 0.92
TTC28Q96AY4 AC021066.1-201ENST00000549788 647 ntTSL 3 BASIC20.81■□□□□ 0.92
TTC28Q96AY4 AL445675.2-201ENST00000620291 557 ntBASIC20.81■□□□□ 0.92
TTC28Q96AY4 ZDHHC1-201ENST00000348579 2047 ntAPPRIS P2 TSL 1 (best) BASIC20.8■□□□□ 0.92
TTC28Q96AY4 LCE1F-201ENST00000334371 357 ntAPPRIS P1 BASIC20.8■□□□□ 0.92
TTC28Q96AY4 DBNDD2-202ENST00000360981 1078 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TTC28Q96AY4 CCNG1-211ENST00000512163 919 ntTSL 2 BASIC20.8■□□□□ 0.92
TTC28Q96AY4 TESC-AS1-201ENST00000547006 1053 ntTSL 2 BASIC20.8■□□□□ 0.92
TTC28Q96AY4 MIR3652-201ENST00000579335 131 ntBASIC20.8■□□□□ 0.92
TTC28Q96AY4 ZNF554-204ENST00000591265 1148 ntTSL 5 BASIC20.8■□□□□ 0.92
TTC28Q96AY4 AL355385.1-201ENST00000606123 409 ntBASIC20.8■□□□□ 0.92
TTC28Q96AY4 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC20.8■□□□□ 0.92
TTC28Q96AY4 EPN2-212ENST00000575595 1491 ntTSL 2 BASIC20.8■□□□□ 0.92
TTC28Q96AY4 PDLIM2-221ENST00000622702 1490 ntTSL 5 BASIC20.8■□□□□ 0.92
TTC28Q96AY4 FAM83A-205ENST00000522648 1604 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
TTC28Q96AY4 TSPAN14-203ENST00000372156 1380 ntAPPRIS P1 TSL 5 BASIC20.8■□□□□ 0.92
TTC28Q96AY4 GDF1-201ENST00000247005 2517 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TTC28Q96AY4 CERS1-204ENST00000623882 2517 ntTSL 1 (best) BASIC20.8■□□□□ 0.92
TTC28Q96AY4 TSSC4-207ENST00000451491 1423 ntAPPRIS P3 TSL 1 (best) BASIC20.8■□□□□ 0.92
TTC28Q96AY4 PLAC8-202ENST00000411416 786 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TTC28Q96AY4 AL139246.2-201ENST00000456687 1297 ntTSL 5 BASIC20.8■□□□□ 0.92
TTC28Q96AY4 HOXB-AS3-203ENST00000465846 434 ntTSL 3 BASIC20.8■□□□□ 0.92
TTC28Q96AY4 LINC01956-201ENST00000557729 695 ntTSL 5 BASIC20.8■□□□□ 0.92
TTC28Q96AY4 AC008649.1-201ENST00000589557 516 ntTSL 2 BASIC20.8■□□□□ 0.92
TTC28Q96AY4 CHMP4A-211ENST00000609024 735 ntAPPRIS P1 TSL 1 (best) BASIC20.8■□□□□ 0.92
TTC28Q96AY4 LRRC23-207ENST00000433346 1387 ntTSL 5 BASIC20.79■□□□□ 0.92
TTC28Q96AY4 IKBKG-212ENST00000617207 1949 ntAPPRIS ALT1 TSL 3 BASIC20.79■□□□□ 0.92
TTC28Q96AY4 ZYX-201ENST00000322764 2493 ntAPPRIS P2 TSL 1 (best) BASIC20.79■□□□□ 0.92
TTC28Q96AY4 KRTAP5-3-201ENST00000399685 899 ntAPPRIS P1 BASIC20.79■□□□□ 0.92
TTC28Q96AY4 SKP2-204ENST00000508514 821 ntTSL 3 BASIC20.79■□□□□ 0.92
TTC28Q96AY4 AP000777.3-201ENST00000538705 491 ntTSL 3 BASIC20.79■□□□□ 0.92
TTC28Q96AY4 DFFB-212ENST00000625756 649 ntTSL 5 BASIC20.79■□□□□ 0.92
TTC28Q96AY4 AC009542.2-201ENST00000637483 1189 ntTSL 5 BASIC20.79■□□□□ 0.92
Retrieved 100 of 98,524 protein–RNA pairs in 20.3 ms