Protein–RNA interactions for Protein: Q8NHS4

CLHC1, Clathrin heavy chain linker domain-containing protein 1, humanhuman

Predictions only

Length 586 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CLHC1Q8NHS4 ATPIF1-203ENST00000468425 539 ntTSL 2 BASIC19.42■□□□□ 0.7
CLHC1Q8NHS4 RAP1B-220ENST00000539091 977 ntTSL 2 BASIC19.42■□□□□ 0.7
CLHC1Q8NHS4 C19orf84-201ENST00000570516 788 ntAPPRIS ALT2 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLHC1Q8NHS4 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC19.42■□□□□ 0.7
CLHC1Q8NHS4 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLHC1Q8NHS4 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC19.42■□□□□ 0.7
CLHC1Q8NHS4 HSPD1-202ENST00000388968 2455 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLHC1Q8NHS4 CYP2A6-201ENST00000301141 1764 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLHC1Q8NHS4 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC19.42■□□□□ 0.7
CLHC1Q8NHS4 DMPK-205ENST00000458663 2548 ntTSL 5 BASIC19.42■□□□□ 0.7
CLHC1Q8NHS4 TMEM79-201ENST00000295694 2191 ntAPPRIS P1 TSL 1 (best) BASIC19.42■□□□□ 0.7
CLHC1Q8NHS4 GSDMD-212ENST00000533063 1800 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLHC1Q8NHS4 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CLHC1Q8NHS4 AC069431.1-201ENST00000488882 1877 ntTSL 5 BASIC19.41■□□□□ 0.7
CLHC1Q8NHS4 UBXN6-201ENST00000301281 1943 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLHC1Q8NHS4 LRRC25-202ENST00000595840 1924 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLHC1Q8NHS4 SMARCD2-212ENST00000613943 2342 ntTSL 5 BASIC19.41■□□□□ 0.7
CLHC1Q8NHS4 ZDHHC5-201ENST00000287169 4666 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLHC1Q8NHS4 SCARB1-211ENST00000546215 1597 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CLHC1Q8NHS4 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC19.41■□□□□ 0.7
CLHC1Q8NHS4 LRRC4B-201ENST00000389201 2958 ntAPPRIS P1 TSL 2 BASIC19.41■□□□□ 0.7
CLHC1Q8NHS4 ABHD14A-204ENST00000491470 674 ntTSL 3 BASIC19.41■□□□□ 0.7
CLHC1Q8NHS4 AC243732.1-201ENST00000612648 864 ntBASIC19.41■□□□□ 0.7
CLHC1Q8NHS4 SPATA22-210ENST00000573128 1704 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLHC1Q8NHS4 GPT-205ENST00000528431 1822 ntAPPRIS P1 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLHC1Q8NHS4 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
CLHC1Q8NHS4 IGFBP3-210ENST00000613132 2412 ntTSL 5 BASIC19.41■□□□□ 0.7
CLHC1Q8NHS4 ETV7-203ENST00000373737 1488 ntAPPRIS ALT2 TSL 1 (best) BASIC19.41■□□□□ 0.7
CLHC1Q8NHS4 NEURL3-204ENST00000451794 1461 ntAPPRIS P1 TSL 5 BASIC19.41■□□□□ 0.7
CLHC1Q8NHS4 RAX-202ENST00000334889 3197 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLHC1Q8NHS4 RAB11FIP5-201ENST00000258098 4342 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLHC1Q8NHS4 TAF5L-201ENST00000258281 3112 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
CLHC1Q8NHS4 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CLHC1Q8NHS4 ATOX1-207ENST00000524142 749 ntAPPRIS P1 TSL 5 BASIC19.4■□□□□ 0.7
CLHC1Q8NHS4 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC19.4■□□□□ 0.7
CLHC1Q8NHS4 DHPS-223ENST00000614126 1124 ntTSL 5 BASIC19.4■□□□□ 0.7
CLHC1Q8NHS4 ACBD4-216ENST00000619916 1276 ntTSL 5 BASIC19.4■□□□□ 0.7
CLHC1Q8NHS4 TCF3P1-201ENST00000423021 1937 ntBASIC19.4■□□□□ 0.7
CLHC1Q8NHS4 SYT7-206ENST00000540677 2013 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CLHC1Q8NHS4 DLEU7-201ENST00000400393 2092 ntAPPRIS P3 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLHC1Q8NHS4 TMCO3-201ENST00000375391 2132 ntTSL 1 (best) BASIC19.4■□□□□ 0.7
CLHC1Q8NHS4 MMP11-201ENST00000215743 2291 ntAPPRIS P1 TSL 1 (best) BASIC19.4■□□□□ 0.7
CLHC1Q8NHS4 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC19.39■□□□□ 0.7
CLHC1Q8NHS4 MATK-215ENST00000619596 1740 ntAPPRIS P4 TSL 2 BASIC19.39■□□□□ 0.7
CLHC1Q8NHS4 RIMBP3-201ENST00000619918 6105 ntAPPRIS P1 BASIC19.39■□□□□ 0.7
CLHC1Q8NHS4 FLT1-207ENST00000615840 6453 ntTSL 1 (best) BASIC19.39■□□□□ 0.7
CLHC1Q8NHS4 AC092835.1-201ENST00000425953 1850 ntAPPRIS P1 TSL 5 BASIC19.39■□□□□ 0.7
CLHC1Q8NHS4 ACAP3-201ENST00000353662 2280 ntTSL 1 (best) BASIC19.39■□□□□ 0.69
CLHC1Q8NHS4 TAF7-201ENST00000313368 2334 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
CLHC1Q8NHS4 SLC4A4-201ENST00000264485 5852 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CLHC1Q8NHS4 FBLN1-204ENST00000402984 2355 ntTSL 5 BASIC19.39■□□□□ 0.69
CLHC1Q8NHS4 NRP2-206ENST00000417189 2386 ntTSL 2 BASIC19.39■□□□□ 0.69
CLHC1Q8NHS4 EMC7-201ENST00000256545 1155 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CLHC1Q8NHS4 HIST2H2AC-201ENST00000331380 390 ntAPPRIS P1 BASIC19.39■□□□□ 0.69
CLHC1Q8NHS4 TMEM61-201ENST00000371268 1097 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CLHC1Q8NHS4 RASGRP2-203ENST00000377486 667 ntTSL 3 BASIC19.39■□□□□ 0.69
CLHC1Q8NHS4 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
CLHC1Q8NHS4 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC19.39■□□□□ 0.69
CLHC1Q8NHS4 SLC7A5P1-201ENST00000568957 537 ntBASIC19.39■□□□□ 0.69
CLHC1Q8NHS4 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC19.39■□□□□ 0.69
CLHC1Q8NHS4 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC19.39■□□□□ 0.69
CLHC1Q8NHS4 TOR1B-201ENST00000259339 2769 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CLHC1Q8NHS4 MEF2B-203ENST00000410050 1429 ntTSL 5 BASIC19.39■□□□□ 0.69
CLHC1Q8NHS4 NSMF-206ENST00000371475 2987 ntAPPRIS ALT1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CLHC1Q8NHS4 TCF7-201ENST00000342854 3045 ntAPPRIS P2 TSL 1 (best) BASIC19.39■□□□□ 0.69
CLHC1Q8NHS4 MAP2K5-203ENST00000354498 1783 ntTSL 2 BASIC19.39■□□□□ 0.69
CLHC1Q8NHS4 CDO1-201ENST00000250535 1860 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CLHC1Q8NHS4 UBAP1-204ENST00000625521 2029 ntTSL 2 BASIC19.39■□□□□ 0.69
CLHC1Q8NHS4 C2CD2-202ENST00000380486 6345 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CLHC1Q8NHS4 MRGPRF-201ENST00000309099 2295 ntAPPRIS P1 TSL 1 (best) BASIC19.39■□□□□ 0.69
CLHC1Q8NHS4 OLFM1-205ENST00000371796 2492 ntTSL 2 BASIC19.39■□□□□ 0.69
CLHC1Q8NHS4 PI4KB-213ENST00000529142 2603 ntTSL 2 BASIC19.38■□□□□ 0.69
CLHC1Q8NHS4 CYP26A1-201ENST00000224356 2125 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CLHC1Q8NHS4 DESI2-201ENST00000263831 859 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CLHC1Q8NHS4 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC19.38■□□□□ 0.69
CLHC1Q8NHS4 PARP1-202ENST00000366792 553 ntTSL 3 BASIC19.38■□□□□ 0.69
CLHC1Q8NHS4 EPHA10-202ENST00000373048 5425 ntAPPRIS P2 TSL 5 BASIC19.38■□□□□ 0.69
CLHC1Q8NHS4 LYRM9-201ENST00000379102 501 ntAPPRIS P1 TSL 2 BASIC19.38■□□□□ 0.69
CLHC1Q8NHS4 RASGRP2-211ENST00000394432 2304 ntAPPRIS P2 TSL 1 (best) BASIC19.38■□□□□ 0.69
CLHC1Q8NHS4 ARHGAP22-204ENST00000417247 2340 ntTSL 2 BASIC19.38■□□□□ 0.69
CLHC1Q8NHS4 CENPVL3-201ENST00000417339 864 ntAPPRIS P1 BASIC19.38■□□□□ 0.69
CLHC1Q8NHS4 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC19.38■□□□□ 0.69
CLHC1Q8NHS4 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
CLHC1Q8NHS4 GLT8D1-206ENST00000478968 1826 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CLHC1Q8NHS4 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CLHC1Q8NHS4 LYRM9-206ENST00000508862 807 ntTSL 3 BASIC19.38■□□□□ 0.69
CLHC1Q8NHS4 FASTK-217ENST00000540185 1609 ntTSL 5 BASIC19.38■□□□□ 0.69
CLHC1Q8NHS4 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CLHC1Q8NHS4 FAM129C-205ENST00000595684 2265 ntAPPRIS ALT2 TSL 1 (best) BASIC19.38■□□□□ 0.69
CLHC1Q8NHS4 MYCNOS-205ENST00000641950 531 ntBASIC19.38■□□□□ 0.69
CLHC1Q8NHS4 CNEP1R1-203ENST00000458059 2965 ntTSL 1 (best) BASIC19.38■□□□□ 0.69
CLHC1Q8NHS4 SET-201ENST00000322030 2915 ntAPPRIS P1 TSL 1 (best) BASIC19.38■□□□□ 0.69
CLHC1Q8NHS4 NYX-202ENST00000378220 2297 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CLHC1Q8NHS4 NSDHL-201ENST00000370274 1929 ntAPPRIS P2 TSL 1 (best) BASIC19.37■□□□□ 0.69
CLHC1Q8NHS4 FBXL17-205ENST00000542267 5188 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CLHC1Q8NHS4 DPP3P2-201ENST00000416030 1696 ntBASIC19.37■□□□□ 0.69
CLHC1Q8NHS4 PUS1-203ENST00000443358 1664 ntAPPRIS ALT2 TSL 1 (best) BASIC19.37■□□□□ 0.69
CLHC1Q8NHS4 B3GALNT1-212ENST00000488170 1660 ntAPPRIS P1 TSL 1 (best) BASIC19.37■□□□□ 0.69
CLHC1Q8NHS4 PLSCR3-213ENST00000576362 1605 ntTSL 3 BASIC19.37■□□□□ 0.69
CLHC1Q8NHS4 CAPZB-205ENST00000433834 1462 ntTSL 2 BASIC19.37■□□□□ 0.69
Retrieved 100 of 98,524 protein–RNA pairs in 37 ms