Protein–RNA interactions for Protein: Q6P4E1

CASC4, Protein CASC4, humanhuman

Predictions only

Length 433 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CASC4Q6P4E1 SP9-201ENST00000394967 2554 ntAPPRIS P1 TSL 5 BASIC20.63■□□□□ 0.89
CASC4Q6P4E1 ARHGAP23-222ENST00000622683 5964 ntAPPRIS P2 TSL 5 BASIC20.63■□□□□ 0.89
CASC4Q6P4E1 GMPPA-201ENST00000313597 1544 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CASC4Q6P4E1 TSSC4-203ENST00000380996 1544 ntAPPRIS ALT2 TSL 1 (best) BASIC20.63■□□□□ 0.89
CASC4Q6P4E1 MUS81-201ENST00000308110 2392 ntAPPRIS P1 TSL 1 (best) BASIC20.63■□□□□ 0.89
CASC4Q6P4E1 DCPS-201ENST00000263579 1479 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CASC4Q6P4E1 ACVR1C-201ENST00000243349 8994 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CASC4Q6P4E1 FAM19A4-201ENST00000295569 2292 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CASC4Q6P4E1 PDE9A-212ENST00000398234 1783 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CASC4Q6P4E1 FAM213A-202ENST00000372185 1723 ntTSL 2 BASIC20.62■□□□□ 0.89
CASC4Q6P4E1 AC019069.1-201ENST00000610008 1333 ntBASIC20.62■□□□□ 0.89
CASC4Q6P4E1 LTBP4-201ENST00000204005 5032 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CASC4Q6P4E1 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CASC4Q6P4E1 ENPP7-201ENST00000328313 2043 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CASC4Q6P4E1 MAP1LC3A-202ENST00000374837 961 ntTSL 3 BASIC20.62■□□□□ 0.89
CASC4Q6P4E1 AC091799.1-201ENST00000422823 811 ntBASIC20.62■□□□□ 0.89
CASC4Q6P4E1 AC007322.3-201ENST00000426526 701 ntBASIC20.62■□□□□ 0.89
CASC4Q6P4E1 EXD3-208ENST00000479452 962 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CASC4Q6P4E1 AP005205.2-201ENST00000577327 491 ntTSL 2 BASIC20.62■□□□□ 0.89
CASC4Q6P4E1 MIF4GD-211ENST00000580571 952 ntTSL 2 BASIC20.62■□□□□ 0.89
CASC4Q6P4E1 RPS15-210ENST00000592623 873 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CASC4Q6P4E1 AC243732.1-201ENST00000612648 864 ntBASIC20.62■□□□□ 0.89
CASC4Q6P4E1 CHKB-201ENST00000406938 1638 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CASC4Q6P4E1 HNF4A-205ENST00000443598 1603 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CASC4Q6P4E1 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC20.62■□□□□ 0.89
CASC4Q6P4E1 NFKBIE-204ENST00000619360 2327 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CASC4Q6P4E1 KIAA0895L-206ENST00000563902 2233 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CASC4Q6P4E1 NTN5-201ENST00000270235 1836 ntAPPRIS P1 TSL 1 (best) BASIC20.62■□□□□ 0.89
CASC4Q6P4E1 MSLN-205ENST00000563941 2109 ntAPPRIS ALT2 TSL 1 (best) BASIC20.62■□□□□ 0.89
CASC4Q6P4E1 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC20.62■□□□□ 0.89
CASC4Q6P4E1 PKMYT1-204ENST00000440027 2061 ntTSL 2 BASIC20.62■□□□□ 0.89
CASC4Q6P4E1 ALG1-202ENST00000544428 1419 ntTSL 2 BASIC20.61■□□□□ 0.89
CASC4Q6P4E1 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC20.61■□□□□ 0.89
CASC4Q6P4E1 SMARCB1-202ENST00000344921 1728 ntTSL 2 BASIC20.61■□□□□ 0.89
CASC4Q6P4E1 AC007249.2-201ENST00000553181 1737 ntTSL 5 BASIC20.61■□□□□ 0.89
CASC4Q6P4E1 HS3ST4-201ENST00000331351 3203 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CASC4Q6P4E1 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CASC4Q6P4E1 P2RY11-201ENST00000321826 1943 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CASC4Q6P4E1 PITX1-205ENST00000506438 1305 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CASC4Q6P4E1 PRR25-201ENST00000301698 1209 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CASC4Q6P4E1 PYY-201ENST00000360085 1053 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CASC4Q6P4E1 INTS11-205ENST00000429572 1104 ntTSL 2 BASIC20.61■□□□□ 0.89
CASC4Q6P4E1 SLC7A5P1-201ENST00000568957 537 ntBASIC20.61■□□□□ 0.89
CASC4Q6P4E1 UBE2DNL-204ENST00000602536 740 ntBASIC20.61■□□□□ 0.89
CASC4Q6P4E1 SPOCK2-209ENST00000536168 1824 ntAPPRIS ALT2 TSL 5 BASIC20.61■□□□□ 0.89
CASC4Q6P4E1 FAM189B-201ENST00000350210 2379 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CASC4Q6P4E1 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC20.61■□□□□ 0.89
CASC4Q6P4E1 AC009041.2-204ENST00000568394 3343 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CASC4Q6P4E1 OGG1-205ENST00000344629 1744 ntAPPRIS ALT2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CASC4Q6P4E1 PCDHB12-203ENST00000624949 1963 ntTSL 2 BASIC20.61■□□□□ 0.89
CASC4Q6P4E1 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC20.61■□□□□ 0.89
CASC4Q6P4E1 GORAB-201ENST00000367762 1699 ntTSL 1 (best) BASIC20.61■□□□□ 0.89
CASC4Q6P4E1 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC20.61■□□□□ 0.89
CASC4Q6P4E1 LMAN1L-201ENST00000309664 1873 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CASC4Q6P4E1 MAPK9-201ENST00000343111 4369 ntTSL 5 BASIC20.6■□□□□ 0.89
CASC4Q6P4E1 PACRGL-208ENST00000503585 1582 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
CASC4Q6P4E1 SCUBE1-201ENST00000290460 2258 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CASC4Q6P4E1 MAFG-201ENST00000357736 5040 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CASC4Q6P4E1 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
CASC4Q6P4E1 CBR1-201ENST00000290349 1293 ntAPPRIS P1 TSL 1 (best) BASIC20.6■□□□□ 0.89
CASC4Q6P4E1 MRPL37-201ENST00000336230 1179 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CASC4Q6P4E1 PGAP3-204ENST00000429199 970 ntTSL 2 BASIC20.6■□□□□ 0.89
CASC4Q6P4E1 LINC00472-204ENST00000436803 667 ntTSL 5 BASIC20.6■□□□□ 0.89
CASC4Q6P4E1 TNFRSF11A-207ENST00000639222 855 ntAPPRIS ALT2 TSL 5 BASIC20.6■□□□□ 0.89
CASC4Q6P4E1 POLD2-202ENST00000406581 2158 ntAPPRIS P1 TSL 2 BASIC20.6■□□□□ 0.89
CASC4Q6P4E1 SMG8-203ENST00000578922 2178 ntBASIC20.6■□□□□ 0.89
CASC4Q6P4E1 SUMF2-201ENST00000275607 1894 ntTSL 1 (best) BASIC20.6■□□□□ 0.89
CASC4Q6P4E1 KREMEN2-202ENST00000319500 1882 ntAPPRIS ALT2 TSL 1 (best) BASIC20.6■□□□□ 0.89
CASC4Q6P4E1 NFIB-207ENST00000397579 3129 ntTSL 5 BASIC20.6■□□□□ 0.89
CASC4Q6P4E1 ADM-207ENST00000530439 1839 ntTSL 2 BASIC20.6■□□□□ 0.89
CASC4Q6P4E1 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CASC4Q6P4E1 FAM46B-201ENST00000289166 2368 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CASC4Q6P4E1 TMPRSS5-208ENST00000544476 1320 ntTSL 2 BASIC20.59■□□□□ 0.89
CASC4Q6P4E1 SERBP1-201ENST00000361219 2103 ntAPPRIS ALT1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CASC4Q6P4E1 NARS2-201ENST00000281038 2519 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CASC4Q6P4E1 STAU2-229ENST00000524300 3065 ntAPPRIS P4 TSL 2 BASIC20.59■□□□□ 0.89
CASC4Q6P4E1 HDDC3-202ENST00000394272 1880 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
CASC4Q6P4E1 SLC9A6-202ENST00000370698 4631 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CASC4Q6P4E1 BX322557.1-202ENST00000400362 1460 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CASC4Q6P4E1 PTRH1-201ENST00000335223 759 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CASC4Q6P4E1 GADD45A-201ENST00000370985 803 ntTSL 1 (best) BASIC20.59■□□□□ 0.89
CASC4Q6P4E1 C4orf48-201ENST00000409248 433 ntAPPRIS ALT2 TSL 1 (best) BASIC20.59■□□□□ 0.89
CASC4Q6P4E1 C4orf48-202ENST00000409860 477 ntAPPRIS P3 TSL 1 (best) BASIC20.59■□□□□ 0.89
CASC4Q6P4E1 TSEN15-207ENST00000533373 618 ntTSL 2 BASIC20.59■□□□□ 0.89
CASC4Q6P4E1 KRT18P61-201ENST00000585825 1298 ntBASIC20.59■□□□□ 0.89
CASC4Q6P4E1 ERLIN1-203ENST00000421367 5792 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CASC4Q6P4E1 MAPK15-201ENST00000338033 1961 ntAPPRIS P1 TSL 1 (best) BASIC20.59■□□□□ 0.89
CASC4Q6P4E1 KDF1-201ENST00000320567 1793 ntAPPRIS P1 TSL 2 BASIC20.59■□□□□ 0.89
CASC4Q6P4E1 HMOX2-218ENST00000619913 1908 ntAPPRIS P1 TSL 5 BASIC20.59■□□□□ 0.89
CASC4Q6P4E1 CXCL16-201ENST00000293778 2222 ntAPPRIS P2 TSL 1 (best) BASIC20.58■□□□□ 0.89
CASC4Q6P4E1 DXO-202ENST00000375349 1667 ntAPPRIS P1 TSL 5 BASIC20.58■□□□□ 0.89
CASC4Q6P4E1 BMP1-202ENST00000306385 4229 ntAPPRIS P1 TSL 1 (best) BASIC20.58■□□□□ 0.89
CASC4Q6P4E1 UBE2D3-201ENST00000321805 1087 ntAPPRIS ALT1 TSL 5 BASIC20.58■□□□□ 0.89
CASC4Q6P4E1 IFI6-202ENST00000361157 841 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
CASC4Q6P4E1 AC079305.3-201ENST00000455416 218 ntTSL 5 BASIC20.58■□□□□ 0.89
CASC4Q6P4E1 AIPL1-206ENST00000571740 1202 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
CASC4Q6P4E1 DM1-AS-203ENST00000590076 730 ntTSL 4 BASIC20.58■□□□□ 0.89
CASC4Q6P4E1 AL136982.7-201ENST00000609363 465 ntTSL 4 BASIC20.58■□□□□ 0.89
CASC4Q6P4E1 DTX2-212ENST00000446820 1770 ntAPPRIS ALT2 TSL 1 (best) BASIC20.58■□□□□ 0.89
CASC4Q6P4E1 EPS8L1-209ENST00000588359 1407 ntTSL 5 BASIC20.58■□□□□ 0.88
Retrieved 100 of 98,524 protein–RNA pairs in 47.4 ms