Protein–RNA interactions for Protein: Q4VC31

CCDC58, Coiled-coil domain-containing protein 58, humanhuman

Predictions only

Length 144 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC58Q4VC31 APOC3-205ENST00000630701 541 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC58Q4VC31 HNRNPUL1-203ENST00000378215 2864 ntTSL 2 BASIC18.05■□□□□ 0.48
CCDC58Q4VC31 AQP11-201ENST00000313578 2152 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC58Q4VC31 CRHR1-214ENST00000619154 2370 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC58Q4VC31 CHRDL2-210ENST00000622063 1691 ntTSL 5 BASIC18.05■□□□□ 0.48
CCDC58Q4VC31 ZNF598-204ENST00000563630 3371 ntAPPRIS P1 TSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC58Q4VC31 DLG3-202ENST00000374355 5074 ntTSL 1 (best) BASIC18.05■□□□□ 0.48
CCDC58Q4VC31 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC58Q4VC31 MFF-207ENST00000409565 1548 ntTSL 2 BASIC18.04■□□□□ 0.48
CCDC58Q4VC31 SLC25A10-201ENST00000331531 1946 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC58Q4VC31 PDE4DIP-214ENST00000479408 2746 ntTSL 5 BASIC18.04■□□□□ 0.48
CCDC58Q4VC31 PNMA8B-202ENST00000599531 5308 ntAPPRIS P1 BASIC18.04■□□□□ 0.48
CCDC58Q4VC31 FAM217A-201ENST00000274673 2265 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC58Q4VC31 ATG4B-204ENST00000402096 1685 ntTSL 2 BASIC18.04■□□□□ 0.48
CCDC58Q4VC31 NFATC1-201ENST00000253506 4642 ntAPPRIS P3 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC58Q4VC31 NXT1-201ENST00000254998 1123 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC58Q4VC31 UNC93B3-201ENST00000308076 687 ntBASIC18.04■□□□□ 0.48
CCDC58Q4VC31 PRKCZ-AS1-201ENST00000333854 1253 ntTSL 2 BASIC18.04■□□□□ 0.48
CCDC58Q4VC31 EIF6-201ENST00000374436 1252 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC58Q4VC31 ASCC2-202ENST00000397771 2823 ntAPPRIS P1 TSL 5 BASIC18.04■□□□□ 0.48
CCDC58Q4VC31 GALNS-201ENST00000268695 2363 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC58Q4VC31 TMEM44-203ENST00000381975 2197 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC58Q4VC31 DALRD3-201ENST00000313778 1968 ntTSL 2 BASIC18.04■□□□□ 0.48
CCDC58Q4VC31 AC245041.2-204ENST00000610809 1962 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC58Q4VC31 RTN4-201ENST00000317610 2333 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC58Q4VC31 ZNF419-205ENST00000424930 2323 ntAPPRIS ALT2 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC58Q4VC31 ZNF331-214ENST00000511154 2120 ntAPPRIS P1 TSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC58Q4VC31 DYNC1I1-211ENST00000537881 2146 ntTSL 5 BASIC18.04■□□□□ 0.48
CCDC58Q4VC31 SAMD14-203ENST00000503131 1938 ntTSL 1 (best) BASIC18.04■□□□□ 0.48
CCDC58Q4VC31 EPO-201ENST00000252723 1330 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC58Q4VC31 ACBD4-204ENST00000431281 2026 ntTSL 5 BASIC18.03■□□□□ 0.48
CCDC58Q4VC31 CNNM3-201ENST00000305510 3447 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC58Q4VC31 SUMO3-201ENST00000332859 1807 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC58Q4VC31 RAC1-201ENST00000348035 2323 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC58Q4VC31 CDK13-202ENST00000340829 5066 ntAPPRIS ALT1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC58Q4VC31 BEAN1-202ENST00000536005 1988 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC58Q4VC31 GPR162-203ENST00000428545 1610 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC58Q4VC31 H2AFX-202ENST00000530167 1614 ntAPPRIS P1 BASIC18.03■□□□□ 0.48
CCDC58Q4VC31 DCTPP1-201ENST00000319285 1222 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC58Q4VC31 POU5F1P4-201ENST00000413175 1085 ntBASIC18.03■□□□□ 0.48
CCDC58Q4VC31 ITGA9-AS1-210ENST00000457661 738 ntTSL 4 BASIC18.03■□□□□ 0.48
CCDC58Q4VC31 SSTR3-202ENST00000617123 1781 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC58Q4VC31 IMPDH1-214ENST00000496200 2283 ntTSL 2 BASIC18.03■□□□□ 0.48
CCDC58Q4VC31 LRFN4-201ENST00000309602 2431 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC58Q4VC31 PCDH8-202ENST00000377942 5088 ntAPPRIS P4 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC58Q4VC31 RTBDN-207ENST00000589272 2076 ntTSL 2 BASIC18.03■□□□□ 0.48
CCDC58Q4VC31 LONP1-201ENST00000360614 3236 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC58Q4VC31 PDZD3-201ENST00000322712 2204 ntTSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC58Q4VC31 DLGAP4-201ENST00000339266 5016 ntAPPRIS ALT2 TSL 5 BASIC18.03■□□□□ 0.48
CCDC58Q4VC31 ITPKB-203ENST00000429204 6162 ntAPPRIS P1 TSL 5 BASIC18.03■□□□□ 0.48
CCDC58Q4VC31 NOS1AP-206ENST00000530878 2894 ntAPPRIS ALT2 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC58Q4VC31 KCTD2-201ENST00000322444 3635 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC58Q4VC31 SMG8-203ENST00000578922 2178 ntBASIC18.03■□□□□ 0.48
CCDC58Q4VC31 BACE2-202ENST00000330333 2993 ntAPPRIS P1 TSL 1 (best) BASIC18.03■□□□□ 0.48
CCDC58Q4VC31 RNF224-201ENST00000445101 1798 ntAPPRIS P1 TSL 3 BASIC18.02■□□□□ 0.48
CCDC58Q4VC31 KCNN2-207ENST00000610748 2091 ntTSL 3 BASIC18.02■□□□□ 0.48
CCDC58Q4VC31 ST3GAL3-206ENST00000351035 2377 ntTSL 5 BASIC18.02■□□□□ 0.48
CCDC58Q4VC31 SMG1P5-201ENST00000411546 2362 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC58Q4VC31 TLK2-203ENST00000346027 3449 ntAPPRIS P3 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC58Q4VC31 CLTB-201ENST00000310418 1215 ntAPPRIS P4 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC58Q4VC31 SPSB4-201ENST00000310546 2908 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC58Q4VC31 NAA38-201ENST00000333775 999 ntTSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC58Q4VC31 CLTB-202ENST00000345807 1161 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC58Q4VC31 CEP78-202ENST00000376597 2618 ntAPPRIS P4 TSL 1 (best) BASIC18.02■□□□□ 0.48
CCDC58Q4VC31 RASSF7-204ENST00000431809 1745 ntAPPRIS ALT2 TSL 5 BASIC18.02■□□□□ 0.48
CCDC58Q4VC31 ZNF846-212ENST00000592859 1206 ntTSL 2 BASIC18.02■□□□□ 0.48
CCDC58Q4VC31 MYDGF-203ENST00000599630 713 ntTSL 2 BASIC18.02■□□□□ 0.48
CCDC58Q4VC31 NBPF9-209ENST00000621645 5632 ntAPPRIS ALT2 TSL 2 BASIC18.02■□□□□ 0.48
CCDC58Q4VC31 TREX2-202ENST00000334497 1982 ntTSL 1 (best) BASIC18.02■□□□□ 0.47
CCDC58Q4VC31 LPAR2-203ENST00000586703 1823 ntAPPRIS P1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CCDC58Q4VC31 RBM26-202ENST00000438724 5152 ntAPPRIS ALT1 TSL 1 (best) BASIC18.02■□□□□ 0.47
CCDC58Q4VC31 EML2-220ENST00000589876 2364 ntAPPRIS ALT2 TSL 1 (best) BASIC18.02■□□□□ 0.47
CCDC58Q4VC31 LSM12-201ENST00000293406 2308 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC58Q4VC31 FBXW8-201ENST00000309909 2343 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC58Q4VC31 RAB24-201ENST00000303251 1311 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC58Q4VC31 PLCB2-204ENST00000557821 4517 ntAPPRIS ALT1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC58Q4VC31 SPOPL-201ENST00000280098 6025 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC58Q4VC31 SHANK3-203ENST00000445220 5175 ntAPPRIS ALT2 TSL 5 BASIC18.01■□□□□ 0.47
CCDC58Q4VC31 CHTOP-201ENST00000368686 2250 ntTSL 2 BASIC18.01■□□□□ 0.47
CCDC58Q4VC31 ARMC6-202ENST00000392335 2383 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC58Q4VC31 RAB32-201ENST00000367495 1217 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC58Q4VC31 AL136116.3-201ENST00000402907 1138 ntBASIC18.01■□□□□ 0.47
CCDC58Q4VC31 AC024257.2-201ENST00000549699 147 ntBASIC18.01■□□□□ 0.47
CCDC58Q4VC31 AC127029.2-201ENST00000577329 502 ntTSL 3 BASIC18.01■□□□□ 0.47
CCDC58Q4VC31 AC008175.2-201ENST00000612840 297 ntBASIC18.01■□□□□ 0.47
CCDC58Q4VC31 PRSS33-204ENST00000576886 1755 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC58Q4VC31 RAB24-202ENST00000303270 1385 ntTSL 2 BASIC18.01■□□□□ 0.47
CCDC58Q4VC31 TTLL7-214ENST00000610996 2028 ntTSL 5 BASIC18.01■□□□□ 0.47
CCDC58Q4VC31 AGTR1-209ENST00000497524 2359 ntAPPRIS P1 TSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC58Q4VC31 NOXA1-202ENST00000392815 1464 ntTSL 1 (best) BASIC18.01■□□□□ 0.47
CCDC58Q4VC31 PLSCR3-212ENST00000576201 1965 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC58Q4VC31 KCNC4-204ENST00000438661 2953 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC58Q4VC31 TSPY26P-201ENST00000476365 1326 ntBASIC18■□□□□ 0.47
CCDC58Q4VC31 RAI14-201ENST00000265109 5092 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC58Q4VC31 B3GNT9-201ENST00000449549 2917 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC58Q4VC31 GOLGA3-203ENST00000456883 5496 ntAPPRIS ALT2 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC58Q4VC31 MAST4-206ENST00000406374 1066 ntTSL 1 (best) BASIC18■□□□□ 0.47
CCDC58Q4VC31 ZFYVE28-207ENST00000509171 1135 ntTSL 2 BASIC18■□□□□ 0.47
CCDC58Q4VC31 ENOSF1-201ENST00000251101 1867 ntAPPRIS P1 TSL 1 (best) BASIC18■□□□□ 0.47
CCDC58Q4VC31 NRXN1-208ENST00000405472 5724 ntAPPRIS ALT2 TSL 5 BASIC18■□□□□ 0.47
Retrieved 100 of 98,524 protein–RNA pairs in 71.5 ms