Protein–RNA interactions for Protein: Q3MJ40

CCDC144B, Coiled-coil domain-containing protein 144B, humanhuman

Predictions only

Length 725 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC144BQ3MJ40 ANKLE2-201ENST00000357997 4646 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
CCDC144BQ3MJ40 IRX3-201ENST00000329734 2601 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
CCDC144BQ3MJ40 AC007952.6-201ENST00000573168 2673 ntBASIC23.48■■□□□ 1.35
CCDC144BQ3MJ40 AC003957.1-201ENST00000625108 2673 ntBASIC23.48■■□□□ 1.35
CCDC144BQ3MJ40 TMEM204-201ENST00000253934 1686 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
CCDC144BQ3MJ40 SCRN2-212ENST00000584123 1745 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
CCDC144BQ3MJ40 RNF165-205ENST00000588679 2904 ntBASIC23.48■■□□□ 1.35
CCDC144BQ3MJ40 RELL2-207ENST00000521367 1780 ntTSL 5 BASIC23.48■■□□□ 1.35
CCDC144BQ3MJ40 CD55-205ENST00000367067 1843 ntAPPRIS ALT2 TSL 5 BASIC23.48■■□□□ 1.35
CCDC144BQ3MJ40 C10orf76-201ENST00000311122 724 ntTSL 1 (best) BASIC23.48■■□□□ 1.35
CCDC144BQ3MJ40 PUSL1-201ENST00000379031 1287 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
CCDC144BQ3MJ40 MCRIP2P1-201ENST00000394346 511 ntBASIC23.48■■□□□ 1.35
CCDC144BQ3MJ40 AL596275.1-201ENST00000423464 877 ntBASIC23.48■■□□□ 1.35
CCDC144BQ3MJ40 VMO1-204ENST00000441199 741 ntTSL 2 BASIC23.48■■□□□ 1.35
CCDC144BQ3MJ40 RPS2P4-201ENST00000476944 856 ntBASIC23.48■■□□□ 1.35
CCDC144BQ3MJ40 RPS23-206ENST00000510210 1058 ntTSL 2 BASIC23.48■■□□□ 1.35
CCDC144BQ3MJ40 AL356020.1-201ENST00000554235 1076 ntTSL 5 BASIC23.48■■□□□ 1.35
CCDC144BQ3MJ40 AC060766.5-201ENST00000590539 871 ntBASIC23.48■■□□□ 1.35
CCDC144BQ3MJ40 NNT-AS1-206ENST00000606697 1945 ntTSL 2 BASIC23.48■■□□□ 1.35
CCDC144BQ3MJ40 TXNRD3-204ENST00000640433 1932 ntAPPRIS P4 TSL 1 (best) BASIC23.48■■□□□ 1.35
CCDC144BQ3MJ40 TSPAN17-202ENST00000310032 2550 ntTSL 5 BASIC23.48■■□□□ 1.35
CCDC144BQ3MJ40 HERC2P8-204ENST00000567073 1988 ntTSL 5 BASIC23.48■■□□□ 1.35
CCDC144BQ3MJ40 USP39-203ENST00000409470 2034 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
CCDC144BQ3MJ40 TPPP3-204ENST00000562206 1410 ntAPPRIS P1 TSL 2 BASIC23.48■■□□□ 1.35
CCDC144BQ3MJ40 GNB1L-202ENST00000403325 1699 ntAPPRIS P1 TSL 1 (best) BASIC23.48■■□□□ 1.35
CCDC144BQ3MJ40 FBXL19-207ENST00000565690 2570 ntAPPRIS ALT2 TSL 5 BASIC23.47■■□□□ 1.35
CCDC144BQ3MJ40 KLF9-201ENST00000377126 5175 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
CCDC144BQ3MJ40 PFKFB3-216ENST00000625260 1752 ntAPPRIS ALT1 TSL 5 BASIC23.47■■□□□ 1.35
CCDC144BQ3MJ40 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
CCDC144BQ3MJ40 AGAP3-202ENST00000397238 3225 ntAPPRIS P2 TSL 1 (best) BASIC23.47■■□□□ 1.35
CCDC144BQ3MJ40 C15orf48-201ENST00000344300 875 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
CCDC144BQ3MJ40 TMEM35B-201ENST00000373337 922 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
CCDC144BQ3MJ40 HOTAIRM1-203ENST00000429611 722 ntTSL 1 (best) BASIC23.47■■□□□ 1.35
CCDC144BQ3MJ40 UNC93B4-201ENST00000505679 747 ntBASIC23.47■■□□□ 1.35
CCDC144BQ3MJ40 FFAR3-202ENST00000594310 1182 ntAPPRIS P1 BASIC23.47■■□□□ 1.35
CCDC144BQ3MJ40 AL589743.5-201ENST00000616611 1050 ntBASIC23.47■■□□□ 1.35
CCDC144BQ3MJ40 HLA-B-256ENST00000639848 1089 ntBASIC23.47■■□□□ 1.35
CCDC144BQ3MJ40 CDK6-202ENST00000424848 1465 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
CCDC144BQ3MJ40 PRR20B-201ENST00000377930 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
CCDC144BQ3MJ40 PRR20A-201ENST00000377931 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
CCDC144BQ3MJ40 C10orf91-202ENST00000392630 1846 ntTSL 2 BASIC23.47■■□□□ 1.35
CCDC144BQ3MJ40 PRR20E-201ENST00000434815 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
CCDC144BQ3MJ40 PRR20D-201ENST00000452123 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
CCDC144BQ3MJ40 PRR20C-201ENST00000544357 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
CCDC144BQ3MJ40 PRR20C-202ENST00000614894 1847 ntAPPRIS P1 TSL 1 (best) BASIC23.47■■□□□ 1.35
CCDC144BQ3MJ40 FIP1L1-201ENST00000306932 1878 ntAPPRIS ALT2 TSL 1 (best) BASIC23.47■■□□□ 1.35
CCDC144BQ3MJ40 CBWD3-201ENST00000360171 2165 ntAPPRIS P2 TSL 1 (best) BASIC23.47■■□□□ 1.35
CCDC144BQ3MJ40 DISC1-215ENST00000602281 2761 ntAPPRIS ALT2 TSL 1 (best) BASIC23.46■■□□□ 1.35
CCDC144BQ3MJ40 NPTXR-201ENST00000333039 5784 ntAPPRIS ALT2 TSL 1 (best) BASIC23.46■■□□□ 1.35
CCDC144BQ3MJ40 FOXP4-203ENST00000373060 5948 ntTSL 5 BASIC23.46■■□□□ 1.35
CCDC144BQ3MJ40 FOXP4-204ENST00000373063 5910 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
CCDC144BQ3MJ40 CABLES1-201ENST00000256925 5002 ntAPPRIS P4 TSL 1 (best) BASIC23.46■■□□□ 1.35
CCDC144BQ3MJ40 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC23.46■■□□□ 1.35
CCDC144BQ3MJ40 CNTNAP3B-202ENST00000341990 2666 ntTSL 2 BASIC23.46■■□□□ 1.35
CCDC144BQ3MJ40 P2RX2-201ENST00000343948 1494 ntAPPRIS P4 TSL 1 (best) BASIC23.46■■□□□ 1.35
CCDC144BQ3MJ40 GPRIN2-202ENST00000374317 1966 ntAPPRIS P1 TSL 3 BASIC23.46■■□□□ 1.35
CCDC144BQ3MJ40 RGCC-201ENST00000379359 960 ntAPPRIS P1 TSL 1 (best) BASIC23.46■■□□□ 1.35
CCDC144BQ3MJ40 ERLEC1-203ENST00000405123 1756 ntTSL 5 BASIC23.46■■□□□ 1.35
CCDC144BQ3MJ40 AC114730.2-201ENST00000417267 668 ntTSL 3 BASIC23.46■■□□□ 1.35
CCDC144BQ3MJ40 CDKN2A-205ENST00000479692 544 ntTSL 5 BASIC23.46■■□□□ 1.35
CCDC144BQ3MJ40 TMEM9B-203ENST00000528117 949 ntTSL 2 BASIC23.46■■□□□ 1.35
CCDC144BQ3MJ40 AC044860.1-201ENST00000560756 1160 ntTSL 1 (best) BASIC23.46■■□□□ 1.35
CCDC144BQ3MJ40 DNAAF3-207ENST00000527223 2228 ntAPPRIS ALT2 TSL 2 BASIC23.45■■□□□ 1.35
CCDC144BQ3MJ40 PXYLP1-203ENST00000502783 2066 ntTSL 2 BASIC23.45■■□□□ 1.35
CCDC144BQ3MJ40 PCED1A-202ENST00000360652 2016 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.35
CCDC144BQ3MJ40 ZNF821-202ENST00000425432 2000 ntAPPRIS P1 TSL 5 BASIC23.45■■□□□ 1.35
CCDC144BQ3MJ40 SNUPN-205ENST00000564644 1931 ntAPPRIS P1 TSL 2 BASIC23.45■■□□□ 1.35
CCDC144BQ3MJ40 NARF-205ENST00000412079 1760 ntTSL 5 BASIC23.45■■□□□ 1.34
CCDC144BQ3MJ40 CENPS-CORT-201ENST00000400900 1469 ntTSL 2 BASIC23.45■■□□□ 1.34
CCDC144BQ3MJ40 CAPN12-201ENST00000328867 2762 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
CCDC144BQ3MJ40 OLFM1-202ENST00000277415 1014 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
CCDC144BQ3MJ40 NMRK1-201ENST00000361092 1185 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
CCDC144BQ3MJ40 RRAS2-203ENST00000526063 970 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
CCDC144BQ3MJ40 AP001972.3-201ENST00000530792 495 ntTSL 3 BASIC23.45■■□□□ 1.34
CCDC144BQ3MJ40 RRAS2-208ENST00000532814 982 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
CCDC144BQ3MJ40 AC089999.2-201ENST00000552525 248 ntTSL 3 BASIC23.45■■□□□ 1.34
CCDC144BQ3MJ40 CRHR1-203ENST00000339069 2490 ntTSL 2 BASIC23.45■■□□□ 1.34
CCDC144BQ3MJ40 GJC2-201ENST00000366714 2243 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
CCDC144BQ3MJ40 DSG2-201ENST00000261590 5831 ntAPPRIS P1 TSL 1 (best) BASIC23.45■■□□□ 1.34
CCDC144BQ3MJ40 NAE1-203ENST00000379463 1909 ntTSL 2 BASIC23.45■■□□□ 1.34
CCDC144BQ3MJ40 UBE2I-205ENST00000402301 1708 ntTSL 1 (best) BASIC23.45■■□□□ 1.34
CCDC144BQ3MJ40 LAYN-203ENST00000436913 2590 ntTSL 2 BASIC23.45■■□□□ 1.34
CCDC144BQ3MJ40 NKX1-2-201ENST00000451024 3364 ntAPPRIS P1 TSL 5 BASIC23.44■■□□□ 1.34
CCDC144BQ3MJ40 ATOH8-201ENST00000306279 2438 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
CCDC144BQ3MJ40 SOX8-201ENST00000293894 3049 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
CCDC144BQ3MJ40 ACBD4-202ENST00000376955 1453 ntTSL 2 BASIC23.44■■□□□ 1.34
CCDC144BQ3MJ40 NFIX-205ENST00000585575 1485 ntAPPRIS P1 TSL 5 BASIC23.44■■□□□ 1.34
CCDC144BQ3MJ40 ZNF579-201ENST00000325421 2899 ntAPPRIS P1 TSL 2 BASIC23.44■■□□□ 1.34
CCDC144BQ3MJ40 ANTXR1-202ENST00000409349 1384 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
CCDC144BQ3MJ40 EEF1DP3-201ENST00000428783 1309 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
CCDC144BQ3MJ40 DHRS4-204ENST00000543741 1340 ntTSL 2 BASIC23.44■■□□□ 1.34
CCDC144BQ3MJ40 WDR74-202ENST00000311713 1153 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
CCDC144BQ3MJ40 PEX7-202ENST00000367756 680 ntTSL 3 BASIC23.44■■□□□ 1.34
CCDC144BQ3MJ40 F8A2-201ENST00000369505 1116 ntAPPRIS P1 BASIC23.44■■□□□ 1.34
CCDC144BQ3MJ40 EGFL7-202ENST00000371698 1282 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
CCDC144BQ3MJ40 AP000697.1-201ENST00000430607 339 ntTSL 5 BASIC23.44■■□□□ 1.34
CCDC144BQ3MJ40 EIF3J-AS1-205ENST00000560750 1093 ntTSL 3 BASIC23.44■■□□□ 1.34
CCDC144BQ3MJ40 ADAMTS10-205ENST00000595838 2458 ntTSL 2 BASIC23.44■■□□□ 1.34
CCDC144BQ3MJ40 CRLF3-201ENST00000324238 2957 ntAPPRIS P1 TSL 1 (best) BASIC23.44■■□□□ 1.34
CCDC144BQ3MJ40 MZF1-203ENST00000594234 2385 ntTSL 1 (best) BASIC23.44■■□□□ 1.34
Retrieved 100 of 98,524 protein–RNA pairs in 47.3 ms