Protein–RNA interactions for Protein: Q08174

PCDH1, Protocadherin-1, humanhuman

Predictions only

Length 1,060 aa.

Download Table  
Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
PCDH1Q08174 EXTL3-213ENST00000523149 1779 ntTSL 5 BASIC19.56■□□□□ 0.72
PCDH1Q08174 RBM45-207ENST00000616198 1788 ntAPPRIS ALT1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PCDH1Q08174 GPAA1-201ENST00000355091 2078 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PCDH1Q08174 UBE2H-201ENST00000355621 5151 ntAPPRIS P1 TSL 1 (best) BASIC19.56■□□□□ 0.72
PCDH1Q08174 NSUN2-206ENST00000506139 2619 ntAPPRIS ALT2 TSL 2 BASIC19.55■□□□□ 0.72
PCDH1Q08174 ADRM1-201ENST00000253003 1478 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
PCDH1Q08174 COPS7A-222ENST00000626119 1768 ntTSL 3 BASIC19.55■□□□□ 0.72
PCDH1Q08174 PLCD1-201ENST00000334661 2769 ntAPPRIS P3 TSL 1 (best) BASIC19.55■□□□□ 0.72
PCDH1Q08174 OLFM1-206ENST00000371799 961 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
PCDH1Q08174 VSX1-201ENST00000376707 943 ntTSL 1 (best) BASIC19.55■□□□□ 0.72
PCDH1Q08174 AMZ1-202ENST00000407112 1862 ntTSL 2 BASIC19.55■□□□□ 0.72
PCDH1Q08174 KRT3-201ENST00000417996 2319 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
PCDH1Q08174 AC007322.1-201ENST00000426983 750 ntBASIC19.55■□□□□ 0.72
PCDH1Q08174 ELAVL3-202ENST00000438662 1223 ntAPPRIS ALT1 TSL 5 BASIC19.55■□□□□ 0.72
PCDH1Q08174 POLE4-205ENST00000483063 1248 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
PCDH1Q08174 MYO19-221ENST00000620640 1186 ntTSL 2 BASIC19.55■□□□□ 0.72
PCDH1Q08174 ARFRP1-210ENST00000614942 2554 ntTSL 5 BASIC19.55■□□□□ 0.72
PCDH1Q08174 CYP27A1-201ENST00000258415 2286 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
PCDH1Q08174 FSCN2-202ENST00000417245 1665 ntAPPRIS P1 TSL 1 (best) BASIC19.55■□□□□ 0.72
PCDH1Q08174 LINC01558-202ENST00000495520 1652 ntTSL 2 BASIC19.55■□□□□ 0.72
PCDH1Q08174 TMEM250-205ENST00000561457 2804 ntAPPRIS P1 TSL 2 BASIC19.55■□□□□ 0.72
PCDH1Q08174 FMR1-204ENST00000370471 4125 ntTSL 5 BASIC19.55■□□□□ 0.72
PCDH1Q08174 JADE2-204ENST00000402835 2797 ntTSL 5 BASIC19.55■□□□□ 0.72
PCDH1Q08174 NAB2-202ENST00000342556 2318 ntTSL 5 BASIC19.54■□□□□ 0.72
PCDH1Q08174 BYSL-201ENST00000230340 2029 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PCDH1Q08174 PPP1CC-201ENST00000335007 2559 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PCDH1Q08174 NSMF-203ENST00000371472 1852 ntAPPRIS P3 TSL 2 BASIC19.54■□□□□ 0.72
PCDH1Q08174 SOX12-201ENST00000342665 4630 ntAPPRIS P1 BASIC19.54■□□□□ 0.72
PCDH1Q08174 TRPV6-209ENST00000638686 2298 ntAPPRIS P2 TSL 1 (best) BASIC19.54■□□□□ 0.72
PCDH1Q08174 KANK3-203ENST00000593649 2672 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
PCDH1Q08174 TPST2-202ENST00000398110 1968 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
PCDH1Q08174 ST3GAL4-209ENST00000526727 1967 ntAPPRIS ALT1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PCDH1Q08174 C19orf67-203ENST00000548523 1427 ntAPPRIS P2 TSL 5 BASIC19.54■□□□□ 0.72
PCDH1Q08174 NEDD8-201ENST00000250495 708 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PCDH1Q08174 AL512625.2-201ENST00000417533 625 ntBASIC19.54■□□□□ 0.72
PCDH1Q08174 ABHD14A-202ENST00000458031 1113 ntTSL 5 BASIC19.54■□□□□ 0.72
PCDH1Q08174 PTGIR-205ENST00000597185 775 ntTSL 3 BASIC19.54■□□□□ 0.72
PCDH1Q08174 OR10C1-204ENST00000622521 1039 ntBASIC19.54■□□□□ 0.72
PCDH1Q08174 TRIM2-212ENST00000632856 656 ntTSL 3 BASIC19.54■□□□□ 0.72
PCDH1Q08174 AP000679.1-202ENST00000319763 2081 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
PCDH1Q08174 SPPL2B-212ENST00000618220 2459 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
PCDH1Q08174 VSX1-202ENST00000376709 2192 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PCDH1Q08174 SSH3-202ENST00000308298 2046 ntTSL 2 BASIC19.54■□□□□ 0.72
PCDH1Q08174 USP39-204ENST00000409766 2033 ntTSL 2 BASIC19.54■□□□□ 0.72
PCDH1Q08174 MANEAL-202ENST00000373045 2685 ntAPPRIS P1 TSL 1 (best) BASIC19.54■□□□□ 0.72
PCDH1Q08174 ATF5-202ENST00000595125 1637 ntAPPRIS P1 TSL 2 BASIC19.54■□□□□ 0.72
PCDH1Q08174 PTPN11-202ENST00000392597 1876 ntTSL 1 (best) BASIC19.54■□□□□ 0.72
PCDH1Q08174 RUNX3-202ENST00000338888 2629 ntAPPRIS ALT2 TSL 1 (best) BASIC19.54■□□□□ 0.72
PCDH1Q08174 B4GALNT1-208ENST00000550764 1967 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
PCDH1Q08174 TMED4-201ENST00000289577 2203 ntTSL 2 BASIC19.53■□□□□ 0.72
PCDH1Q08174 SNX24-211ENST00000513881 1563 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
PCDH1Q08174 NAE1-201ENST00000290810 1837 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PCDH1Q08174 CERKL-201ENST00000339098 1677 ntAPPRIS P3 TSL 1 (best) BASIC19.53■□□□□ 0.72
PCDH1Q08174 RDX-202ENST00000405097 2761 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
PCDH1Q08174 HGH1-201ENST00000347708 2531 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PCDH1Q08174 DLGAP4-204ENST00000373913 5056 ntAPPRIS P4 TSL 1 (best) BASIC19.53■□□□□ 0.72
PCDH1Q08174 TMEM243-201ENST00000257637 1063 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PCDH1Q08174 KANSL1-AS1-201ENST00000398275 517 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
PCDH1Q08174 MFSD10-206ENST00000508221 1639 ntTSL 5 BASIC19.53■□□□□ 0.72
PCDH1Q08174 PDCD2-204ENST00000453163 2657 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
PCDH1Q08174 ZNF582-202ENST00000586929 2053 ntAPPRIS P1 TSL 1 (best) BASIC19.53■□□□□ 0.72
PCDH1Q08174 JAKMIP1-203ENST00000409371 2420 ntTSL 1 (best) BASIC19.53■□□□□ 0.72
PCDH1Q08174 ADM-207ENST00000530439 1839 ntTSL 2 BASIC19.53■□□□□ 0.72
PCDH1Q08174 INPP4A-201ENST00000074304 6752 ntTSL 5 BASIC19.52■□□□□ 0.72
PCDH1Q08174 EIF2B4-201ENST00000347454 1792 ntAPPRIS P3 TSL 1 (best) BASIC19.52■□□□□ 0.72
PCDH1Q08174 NXN-201ENST00000336868 3036 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
PCDH1Q08174 APLP2-204ENST00000345598 1862 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
PCDH1Q08174 GOLGA4-212ENST00000617480 1545 ntTSL 5 BASIC19.52■□□□□ 0.72
PCDH1Q08174 INTS12-206ENST00000451321 1975 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
PCDH1Q08174 NPNT-204ENST00000453617 2419 ntAPPRIS ALT1 TSL 2 BASIC19.52■□□□□ 0.72
PCDH1Q08174 PNKP-214ENST00000600573 1602 ntTSL 5 BASIC19.52■□□□□ 0.72
PCDH1Q08174 PIF1-202ENST00000333425 2278 ntTSL 1 (best) BASIC19.52■□□□□ 0.72
PCDH1Q08174 MOB2-201ENST00000329957 1207 ntAPPRIS P1 TSL 2 BASIC19.52■□□□□ 0.72
PCDH1Q08174 AC062017.1-203ENST00000413029 455 ntTSL 2 BASIC19.52■□□□□ 0.72
PCDH1Q08174 CYP2T1P-201ENST00000432607 1285 ntBASIC19.52■□□□□ 0.72
PCDH1Q08174 GLI3-203ENST00000437480 451 ntTSL 2 BASIC19.52■□□□□ 0.72
PCDH1Q08174 C17orf49-202ENST00000546495 996 ntAPPRIS ALT1 TSL 2 BASIC19.52■□□□□ 0.72
PCDH1Q08174 AC106738.2-202ENST00000558156 533 ntTSL 4 BASIC19.52■□□□□ 0.72
PCDH1Q08174 AC069236.1-201ENST00000604339 616 ntBASIC19.52■□□□□ 0.72
PCDH1Q08174 AC243773.2-201ENST00000616341 490 ntTSL 2 BASIC19.52■□□□□ 0.72
PCDH1Q08174 KRT19-201ENST00000361566 1390 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
PCDH1Q08174 AC099778.1-201ENST00000568593 1911 ntBASIC19.52■□□□□ 0.72
PCDH1Q08174 SPHK2-213ENST00000601712 1394 ntAPPRIS ALT2 TSL 5 BASIC19.52■□□□□ 0.72
PCDH1Q08174 SRCIN1-213ENST00000617146 7058 ntAPPRIS P2 TSL 1 (best) BASIC19.52■□□□□ 0.72
PCDH1Q08174 BCL7A-201ENST00000261822 2581 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
PCDH1Q08174 SBK1-201ENST00000341901 4992 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.72
PCDH1Q08174 ST6GAL2-203ENST00000409087 1657 ntTSL 1 (best) BASIC19.52■□□□□ 0.71
PCDH1Q08174 WNT10A-201ENST00000258411 2547 ntAPPRIS P1 TSL 1 (best) BASIC19.52■□□□□ 0.71
PCDH1Q08174 AL445183.2-201ENST00000439621 1871 ntTSL 2 BASIC19.52■□□□□ 0.71
PCDH1Q08174 PCDHB12-202ENST00000622978 2093 ntTSL 2 BASIC19.52■□□□□ 0.71
PCDH1Q08174 TAF15-215ENST00000605844 2191 ntAPPRIS P3 TSL 1 (best) BASIC19.51■□□□□ 0.71
PCDH1Q08174 UCHL5-204ENST00000367451 1346 ntTSL 5 BASIC19.51■□□□□ 0.71
PCDH1Q08174 WT1-AS-205ENST00000494911 1320 ntTSL 4 BASIC19.51■□□□□ 0.71
PCDH1Q08174 CDC123-201ENST00000281141 1542 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PCDH1Q08174 MAPT-203ENST00000340799 5724 ntAPPRIS ALT2 TSL 1 (best) BASIC19.51■□□□□ 0.71
PCDH1Q08174 INTS11-202ENST00000411962 1832 ntTSL 5 BASIC19.51■□□□□ 0.71
PCDH1Q08174 FOXI1-202ENST00000449804 2011 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
PCDH1Q08174 UNC50-201ENST00000357765 1143 ntAPPRIS P1 TSL 1 (best) BASIC19.51■□□□□ 0.71
PCDH1Q08174 PRSS3-202ENST00000361005 966 ntTSL 1 (best) BASIC19.51■□□□□ 0.71
PCDH1Q08174 STAG3L3-201ENST00000423834 1262 ntTSL 2 BASIC19.51■□□□□ 0.71
Retrieved 100 of 98,524 protein–RNA pairs in 20.2 ms