Protein–RNA interactions for Protein: P49711

CTCF, Transcriptional repressor CTCF, humanhuman

Predicted RBP Predictions only

Length 727 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
CTCFP49711 AGTRAP-201ENST00000314340 1107 ntAPPRIS P3 TSL 1 (best) BASIC23.61■■□□□ 1.37
CTCFP49711 MAP6D1-201ENST00000318631 2111 ntAPPRIS P2 TSL 1 (best) BASIC23.61■■□□□ 1.37
CTCFP49711 PCYT2-201ENST00000331285 2147 ntTSL 2 BASIC23.61■■□□□ 1.37
CTCFP49711 GPSM1-203ENST00000392944 1111 ntTSL 3 BASIC23.61■■□□□ 1.37
CTCFP49711 AC117947.1-201ENST00000427448 529 ntBASIC23.61■■□□□ 1.37
CTCFP49711 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC23.61■■□□□ 1.37
CTCFP49711 AC246785.2-201ENST00000432512 513 ntBASIC23.61■■□□□ 1.37
CTCFP49711 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC23.61■■□□□ 1.37
CTCFP49711 ECEL1P2-202ENST00000465689 757 ntBASIC23.61■■□□□ 1.37
CTCFP49711 AC091390.4-202ENST00000476426 537 ntBASIC23.61■■□□□ 1.37
CTCFP49711 AC128688.1-201ENST00000487626 519 ntBASIC23.61■■□□□ 1.37
CTCFP49711 KRT18P16-201ENST00000510337 1294 ntBASIC23.61■■□□□ 1.37
CTCFP49711 RPS15A-205ENST00000565420 802 ntAPPRIS P1 TSL 2 BASIC23.61■■□□□ 1.37
CTCFP49711 C2orf69P3-201ENST00000565542 1120 ntBASIC23.61■■□□□ 1.37
CTCFP49711 COCH-205ENST00000475087 1997 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
CTCFP49711 IER3-202ENST00000376377 1350 ntBASIC23.61■■□□□ 1.37
CTCFP49711 TSTA3-201ENST00000425753 1362 ntAPPRIS P1 TSL 1 (best) BASIC23.61■■□□□ 1.37
CTCFP49711 DBNDD2-206ENST00000372720 1481 ntTSL 1 (best) BASIC23.61■■□□□ 1.37
CTCFP49711 H19-210ENST00000439725 1929 ntTSL 2 BASIC23.61■■□□□ 1.37
CTCFP49711 MFSD10-205ENST00000507555 1573 ntTSL 5 BASIC23.61■■□□□ 1.37
CTCFP49711 HACD3-205ENST00000562901 1797 ntTSL 5 BASIC23.6■■□□□ 1.37
CTCFP49711 PML-217ENST00000567543 1404 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
CTCFP49711 COPS9-201ENST00000307266 759 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
CTCFP49711 ISCU-201ENST00000311893 994 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CTCFP49711 PSMA7-203ENST00000370873 996 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CTCFP49711 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC23.6■■□□□ 1.37
CTCFP49711 ATP5S-204ENST00000426751 1171 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
CTCFP49711 AF186192.2-201ENST00000524514 423 ntTSL 3 BASIC23.6■■□□□ 1.37
CTCFP49711 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC23.6■■□□□ 1.37
CTCFP49711 CD320-202ENST00000537716 1119 ntTSL 2 BASIC23.6■■□□□ 1.37
CTCFP49711 SLC39A2-203ENST00000554422 1259 ntTSL 1 (best) BASIC23.6■■□□□ 1.37
CTCFP49711 BVES-AS1-203ENST00000580511 853 ntTSL 5 BASIC23.6■■□□□ 1.37
CTCFP49711 HSD17B12-213ENST00000637401 866 ntTSL 4 BASIC23.6■■□□□ 1.37
CTCFP49711 DBP-201ENST00000222122 2229 ntAPPRIS P1 TSL 1 (best) BASIC23.6■■□□□ 1.37
CTCFP49711 DNASE1L2-201ENST00000320700 1326 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
CTCFP49711 P2RX3-204ENST00000616487 1346 ntTSL 5 BASIC23.59■■□□□ 1.37
CTCFP49711 LDB1-201ENST00000361198 2285 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
CTCFP49711 MRGPRE-201ENST00000389832 1409 ntAPPRIS P1 TSL 2 BASIC23.59■■□□□ 1.37
CTCFP49711 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
CTCFP49711 MON1A-203ENST00000455683 1617 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
CTCFP49711 CD6-203ENST00000352009 1809 ntAPPRIS ALT2 TSL 1 (best) BASIC23.59■■□□□ 1.37
CTCFP49711 CCDC151-203ENST00000591179 1943 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
CTCFP49711 C9orf129-201ENST00000375419 1154 ntAPPRIS P1 TSL 5 BASIC23.59■■□□□ 1.37
CTCFP49711 RNF152P1-201ENST00000397754 604 ntBASIC23.59■■□□□ 1.37
CTCFP49711 AL365259.1-203ENST00000451660 707 ntTSL 3 BASIC23.59■■□□□ 1.37
CTCFP49711 TFF3-204ENST00000518498 1109 ntAPPRIS P2 TSL 1 (best) BASIC23.59■■□□□ 1.37
CTCFP49711 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC23.59■■□□□ 1.37
CTCFP49711 KANK3-205ENST00000610351 1191 ntTSL 5 BASIC23.59■■□□□ 1.37
CTCFP49711 AC004263.2-201ENST00000617183 678 ntBASIC23.59■■□□□ 1.37
CTCFP49711 AL121829.2-201ENST00000620908 328 ntBASIC23.59■■□□□ 1.37
CTCFP49711 LRIG1-202ENST00000383703 5283 ntTSL 1 (best) BASIC23.59■■□□□ 1.37
CTCFP49711 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC23.59■■□□□ 1.37
CTCFP49711 ESPN-202ENST00000416731 1338 ntTSL 5 BASIC23.59■■□□□ 1.37
CTCFP49711 CXCL16-203ENST00000574412 1668 ntAPPRIS P2 TSL 1 (best) BASIC23.58■■□□□ 1.37
CTCFP49711 GNB2-206ENST00000424361 1478 ntTSL 5 BASIC23.58■■□□□ 1.37
CTCFP49711 LRRC23-202ENST00000323702 1208 ntAPPRIS ALT2 TSL 1 (best) BASIC23.58■■□□□ 1.37
CTCFP49711 SUMF2-203ENST00000395435 1287 ntTSL 2 BASIC23.58■■□□□ 1.37
CTCFP49711 LINC01122-201ENST00000422723 675 ntTSL 3 BASIC23.58■■□□□ 1.37
CTCFP49711 AC012618.3-202ENST00000440004 472 ntTSL 4 BASIC23.58■■□□□ 1.37
CTCFP49711 FAM207BP-201ENST00000447172 505 ntBASIC23.58■■□□□ 1.37
CTCFP49711 CAMLG-202ENST00000514518 895 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
CTCFP49711 LY6E-210ENST00000521182 1079 ntTSL 1 (best) BASIC23.58■■□□□ 1.37
CTCFP49711 EGLN1P1-201ENST00000531623 762 ntBASIC23.58■■□□□ 1.37
CTCFP49711 CHRNB1-207ENST00000575379 1095 ntTSL 2 BASIC23.58■■□□□ 1.37
CTCFP49711 IRF5-214ENST00000613821 595 ntTSL 5 BASIC23.58■■□□□ 1.37
CTCFP49711 AL121956.5-201ENST00000625261 221 ntBASIC23.58■■□□□ 1.37
CTCFP49711 DOHH-201ENST00000427575 2031 ntAPPRIS P1 TSL 1 (best) BASIC23.58■■□□□ 1.37
CTCFP49711 ME2-208ENST00000638937 2471 ntTSL 5 BASIC23.58■■□□□ 1.37
CTCFP49711 ARHGAP8-204ENST00000389774 1725 ntAPPRIS ALT2 TSL 2 BASIC23.58■■□□□ 1.37
CTCFP49711 NFE2L3P1-201ENST00000588207 1959 ntBASIC23.58■■□□□ 1.36
CTCFP49711 DLL3-201ENST00000205143 2332 ntTSL 1 (best) BASIC23.58■■□□□ 1.36
CTCFP49711 EEF1D-256ENST00000618139 2238 ntTSL 5 BASIC23.57■■□□□ 1.36
CTCFP49711 PCSK6-215ENST00000611967 3336 ntTSL 1 (best) BASIC23.57■■□□□ 1.36
CTCFP49711 PLCB1-204ENST00000404098 1260 ntTSL 3 BASIC23.57■■□□□ 1.36
CTCFP49711 FAM86EP-206ENST00000510506 987 ntBASIC23.57■■□□□ 1.36
CTCFP49711 FXYD1-204ENST00000588081 645 ntAPPRIS P1 TSL 1 (best) BASIC23.57■■□□□ 1.36
CTCFP49711 SMAD7-207ENST00000589634 1278 ntAPPRIS ALT1 TSL 4 BASIC23.57■■□□□ 1.36
CTCFP49711 RNASET2-213ENST00000611959 1124 ntTSL 5 BASIC23.57■■□□□ 1.36
CTCFP49711 C1QTNF8-202ENST00000621771 897 ntTSL 5 BASIC23.57■■□□□ 1.36
CTCFP49711 PITX2-209ENST00000557119 1889 ntTSL 2 BASIC23.57■■□□□ 1.36
CTCFP49711 NFKBID-201ENST00000396901 1834 ntAPPRIS P2 TSL 1 (best) BASIC23.56■■□□□ 1.36
CTCFP49711 NFKBID-211ENST00000641389 1834 ntAPPRIS ALT2 BASIC23.56■■□□□ 1.36
CTCFP49711 TPD52L1-201ENST00000304877 1468 ntAPPRIS ALT2 TSL 2 BASIC23.56■■□□□ 1.36
CTCFP49711 YDJC-201ENST00000292778 1351 ntAPPRIS P1 TSL 2 BASIC23.56■■□□□ 1.36
CTCFP49711 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC23.56■■□□□ 1.36
CTCFP49711 AL445645.1-201ENST00000451318 1019 ntTSL 2 BASIC23.56■■□□□ 1.36
CTCFP49711 LINC01385-201ENST00000512310 780 ntTSL 4 BASIC23.56■■□□□ 1.36
CTCFP49711 ULK4P3-205ENST00000568486 1158 ntTSL 1 (best) BASIC23.56■■□□□ 1.36
CTCFP49711 GJA8-201ENST00000369235 1302 ntAPPRIS P1 BASIC23.56■■□□□ 1.36
CTCFP49711 HLA-G-204ENST00000376828 1490 ntAPPRIS ALT2 BASIC23.56■■□□□ 1.36
CTCFP49711 SUPT4H1-202ENST00000577396 1643 ntTSL 2 BASIC23.55■■□□□ 1.36
CTCFP49711 OIP5-AS1-202ENST00000501665 1384 ntTSL 2 BASIC23.55■■□□□ 1.36
CTCFP49711 AC009014.1-201ENST00000607574 1667 ntAPPRIS P1 BASIC23.55■■□□□ 1.36
CTCFP49711 MPG-201ENST00000219431 1193 ntAPPRIS P4 TSL 3 BASIC23.55■■□□□ 1.36
CTCFP49711 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC23.55■■□□□ 1.36
CTCFP49711 SCGB3A1-201ENST00000292641 521 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
CTCFP49711 CALM1-205ENST00000553542 877 ntTSL 5 BASIC23.55■■□□□ 1.36
CTCFP49711 AC097662.2-201ENST00000641359 267 ntAPPRIS P1 BASIC23.55■■□□□ 1.36
CTCFP49711 TLE3-216ENST00000559191 1575 ntTSL 5 BASIC23.55■■□□□ 1.36
CTCFP49711 HAUS4-201ENST00000206474 1642 ntAPPRIS P1 TSL 1 (best) BASIC23.55■■□□□ 1.36
Retrieved 100 of 98,524 protein–RNA pairs in 38.4 ms