Protein–RNA interactions for Protein: P42858

HTT, Huntingtin, humanhuman

Predictions only

Length 3,142 aa.

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Protein RNA Prediction (catRAPID) Interaction (ENCODE eCLIP)
Gene UniProt Accession Transcript Symbol Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score p-Value Fold Change
HTTP42858 TMEM218-213ENST00000531909 1828 ntAPPRIS P1 TSL 1 (best) BASIC23.03■■□□□ 1.28
HTTP42858 CHRM4-201ENST00000433765 1511 ntAPPRIS P1 BASIC23.03■■□□□ 1.28
HTTP42858 ZDHHC16-202ENST00000352634 1718 ntAPPRIS ALT1 TSL 1 (best) BASIC23.02■■□□□ 1.28
HTTP42858 AC063952.2-201ENST00000498792 1227 ntBASIC23.02■■□□□ 1.28
HTTP42858 AP006284.1-202ENST00000527113 527 ntTSL 4 BASIC23.02■■□□□ 1.28
HTTP42858 AC100839.1-201ENST00000559589 577 ntTSL 4 BASIC23.02■■□□□ 1.28
HTTP42858 CHCHD6-201ENST00000290913 1006 ntAPPRIS P2 TSL 1 (best) BASIC23.02■■□□□ 1.28
HTTP42858 CYB561D2-204ENST00000424512 1212 ntAPPRIS P1 TSL 5 BASIC23.02■■□□□ 1.28
HTTP42858 HAGLROS-201ENST00000426615 1121 ntTSL 2 BASIC23.02■■□□□ 1.28
HTTP42858 IMMP2L-207ENST00000452895 833 ntAPPRIS P1 TSL 5 BASIC23.02■■□□□ 1.28
HTTP42858 LINC00636-201ENST00000494231 1264 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
HTTP42858 TXNDC12-205ENST00000610127 806 ntTSL 2 BASIC23.02■■□□□ 1.28
HTTP42858 KRAS-203ENST00000556131 1696 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
HTTP42858 P4HA3-201ENST00000331597 2274 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
HTTP42858 PNCK-201ENST00000340888 1508 ntAPPRIS P1 TSL 5 BASIC23.02■■□□□ 1.28
HTTP42858 RFC2-202ENST00000352131 1576 ntTSL 1 (best) BASIC23.02■■□□□ 1.28
HTTP42858 GTPBP6-201ENST00000326153 1907 ntAPPRIS P1 TSL 1 (best) BASIC23.02■■□□□ 1.28
HTTP42858 WDR45-218ENST00000473974 1077 ntTSL 5 BASIC23.02■■□□□ 1.27
HTTP42858 CIRBP-213ENST00000587323 1092 ntTSL 5 BASIC23.02■■□□□ 1.27
HTTP42858 CALM3-208ENST00000596362 1203 ntAPPRIS P1 TSL 2 BASIC23.02■■□□□ 1.27
HTTP42858 EXOC3-AS1-202ENST00000623673 1663 ntBASIC23.01■■□□□ 1.27
HTTP42858 MAF1-205ENST00000534585 1754 ntTSL 5 BASIC23.01■■□□□ 1.27
HTTP42858 NTAN1-211ENST00000622833 1049 ntTSL 2 BASIC23.01■■□□□ 1.27
HTTP42858 NTAN1-212ENST00000624579 1115 ntTSL 2 BASIC23.01■■□□□ 1.27
HTTP42858 DMPK-220ENST00000618091 2503 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
HTTP42858 FAM99A-202ENST00000538190 1989 ntBASIC23.01■■□□□ 1.27
HTTP42858 EDA-208ENST00000524573 1381 ntAPPRIS ALT1 TSL 1 (best) BASIC23.01■■□□□ 1.27
HTTP42858 PDXDC1-205ENST00000535621 2048 ntTSL 1 (best) BASIC23.01■■□□□ 1.27
HTTP42858 EPHX4-201ENST00000370383 1437 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
HTTP42858 SWI5-201ENST00000320188 980 ntAPPRIS P3 TSL 1 (best) BASIC23.01■■□□□ 1.27
HTTP42858 ELK1-202ENST00000343894 736 ntAPPRIS ALT2 TSL 1 (best) BASIC23.01■■□□□ 1.27
HTTP42858 KCNS1-202ENST00000537075 2136 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
HTTP42858 VEGFB-201ENST00000309422 1380 ntAPPRIS P3 TSL 1 (best) BASIC23.01■■□□□ 1.27
HTTP42858 SPESP1-201ENST00000310673 1431 ntAPPRIS P1 TSL 1 (best) BASIC23.01■■□□□ 1.27
HTTP42858 DDAH1-205ENST00000539042 1519 ntAPPRIS P1 TSL 5 BASIC23■■□□□ 1.27
HTTP42858 TMEM198B-205ENST00000487582 1581 ntTSL 1 (best) BASIC23■■□□□ 1.27
HTTP42858 YBEY-201ENST00000329319 1019 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
HTTP42858 CDHR4-201ENST00000343366 1188 ntTSL 1 (best) BASIC23■■□□□ 1.27
HTTP42858 YBEY-206ENST00000397701 744 ntAPPRIS P1 TSL 2 BASIC23■■□□□ 1.27
HTTP42858 ICAM1-202ENST00000423829 1296 ntTSL 2 BASIC23■■□□□ 1.27
HTTP42858 ZNF688-205ENST00000563707 244 ntTSL 3 BASIC23■■□□□ 1.27
HTTP42858 LRRC29-209ENST00000629962 1303 ntAPPRIS P1 TSL 5 BASIC23■■□□□ 1.27
HTTP42858 AMZ2-202ENST00000359904 2402 ntAPPRIS P1 TSL 2 BASIC23■■□□□ 1.27
HTTP42858 AL031133.1-201ENST00000406807 723 ntBASIC23■■□□□ 1.27
HTTP42858 OOEP-AS1-201ENST00000445350 463 ntTSL 3 BASIC23■■□□□ 1.27
HTTP42858 IL15RA-206ENST00000397248 1799 ntAPPRIS ALT2 TSL 1 (best) BASIC23■■□□□ 1.27
HTTP42858 NRG2-201ENST00000289409 2535 ntAPPRIS ALT2 TSL 5 BASIC23■■□□□ 1.27
HTTP42858 MMD-201ENST00000262065 2735 ntAPPRIS P1 TSL 1 (best) BASIC23■■□□□ 1.27
HTTP42858 FAM8A6P-201ENST00000407496 1135 ntBASIC22.99■■□□□ 1.27
HTTP42858 LINC00894-209ENST00000458274 547 ntTSL 2 BASIC22.99■■□□□ 1.27
HTTP42858 AC103855.2-201ENST00000533315 573 ntTSL 4 BASIC22.99■■□□□ 1.27
HTTP42858 TRAF7-205ENST00000567653 666 ntTSL 2 BASIC22.99■■□□□ 1.27
HTTP42858 AP000550.4-202ENST00000639755 178 ntBASIC22.99■■□□□ 1.27
HTTP42858 TBCB-201ENST00000221855 1473 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
HTTP42858 CD55-203ENST00000367063 1691 ntAPPRIS ALT2 TSL 1 (best) BASIC22.99■■□□□ 1.27
HTTP42858 KDELR3-201ENST00000216014 1728 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
HTTP42858 SLC41A3-202ENST00000346785 1705 ntTSL 2 BASIC22.99■■□□□ 1.27
HTTP42858 MIR222HG-202ENST00000602507 1758 ntTSL 5 BASIC22.99■■□□□ 1.27
HTTP42858 CDC42SE2-206ENST00000503291 2025 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
HTTP42858 ARRB2-202ENST00000346341 1769 ntTSL 2 BASIC22.99■■□□□ 1.27
HTTP42858 HSD11B1L-218ENST00000581773 1687 ntAPPRIS P3 TSL 1 (best) BASIC22.99■■□□□ 1.27
HTTP42858 HSD11B1L-221ENST00000583928 1319 ntTSL 5 BASIC22.99■■□□□ 1.27
HTTP42858 TSPY8-201ENST00000287721 1161 ntAPPRIS P5 TSL 1 (best) BASIC22.99■■□□□ 1.27
HTTP42858 BET1L-202ENST00000332865 533 ntTSL 5 BASIC22.99■■□□□ 1.27
HTTP42858 TSPY10-201ENST00000428845 1161 ntAPPRIS P5 TSL 1 (best) BASIC22.99■■□□□ 1.27
HTTP42858 LINC01293-201ENST00000453951 1266 ntTSL 1 (best) BASIC22.99■■□□□ 1.27
HTTP42858 TSPY3-203ENST00000457222 1161 ntAPPRIS P5 TSL 1 (best) BASIC22.99■■□□□ 1.27
HTTP42858 NAPSB-206ENST00000562112 1266 ntBASIC22.99■■□□□ 1.27
HTTP42858 LETM2-208ENST00000524874 1459 ntTSL 5 BASIC22.99■■□□□ 1.27
HTTP42858 INGX-201ENST00000359239 846 ntBASIC22.99■■□□□ 1.27
HTTP42858 MESTP1-201ENST00000404287 994 ntBASIC22.99■■□□□ 1.27
HTTP42858 SPINK2-207ENST00000631082 392 ntTSL 5 BASIC22.99■■□□□ 1.27
HTTP42858 RHBDD3-201ENST00000216085 1794 ntAPPRIS P1 TSL 1 (best) BASIC22.99■■□□□ 1.27
HTTP42858 PSMD8-210ENST00000620216 1538 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
HTTP42858 ASPSCR1-201ENST00000306729 2123 ntAPPRIS ALT2 TSL 2 BASIC22.98■■□□□ 1.27
HTTP42858 MFSD14C-208ENST00000637864 1802 ntAPPRIS ALT2 TSL 2 BASIC22.98■■□□□ 1.27
HTTP42858 AKR1A1-201ENST00000351829 1166 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
HTTP42858 SNHG7-203ENST00000436596 509 ntTSL 2 BASIC22.98■■□□□ 1.27
HTTP42858 AGBL5-AS1-201ENST00000444217 407 ntTSL 5 BASIC22.98■■□□□ 1.27
HTTP42858 PFKFB3-201ENST00000317350 1999 ntAPPRIS ALT1 TSL 5 BASIC22.98■■□□□ 1.27
HTTP42858 DNAL4-201ENST00000216068 1504 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
HTTP42858 TULP1-202ENST00000322263 1941 ntTSL 1 (best) BASIC22.98■■□□□ 1.27
HTTP42858 IVD-206ENST00000487418 1809 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
HTTP42858 TOM1L2-210ENST00000542206 1320 ntTSL 2 BASIC22.98■■□□□ 1.27
HTTP42858 AL450487.1-201ENST00000426799 995 ntBASIC22.98■■□□□ 1.27
HTTP42858 FAM87A-204ENST00000613235 858 ntBASIC22.98■■□□□ 1.27
HTTP42858 PTENP1-AS-201ENST00000627688 873 ntTSL 5 BASIC22.98■■□□□ 1.27
HTTP42858 C1orf229-201ENST00000623686 2258 ntBASIC22.98■■□□□ 1.27
HTTP42858 HEXB-201ENST00000261416 1901 ntAPPRIS P1 TSL 1 (best) BASIC22.98■■□□□ 1.27
HTTP42858 MED30-201ENST00000297347 985 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
HTTP42858 TSPO2-202ENST00000373161 958 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
HTTP42858 LINC01381-201ENST00000431650 466 ntTSL 3 BASIC22.97■■□□□ 1.27
HTTP42858 TSPO2-203ENST00000470917 699 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
HTTP42858 AL133352.1-203ENST00000557395 1234 ntAPPRIS P5 TSL 2 BASIC22.97■■□□□ 1.27
HTTP42858 KRT16P1-201ENST00000399124 1418 ntBASIC22.97■■□□□ 1.27
HTTP42858 AC004803.1-203ENST00000539259 501 ntTSL 2 BASIC22.97■■□□□ 1.27
HTTP42858 KDM2B-217ENST00000543852 1188 ntTSL 5 BASIC22.97■■□□□ 1.27
HTTP42858 AL121829.2-201ENST00000620908 328 ntBASIC22.97■■□□□ 1.27
HTTP42858 ACY1-207ENST00000476854 1319 ntTSL 3 BASIC22.97■■□□□ 1.27
HTTP42858 SH3BGRL3-201ENST00000270792 1661 ntAPPRIS P1 TSL 1 (best) BASIC22.97■■□□□ 1.27
Retrieved 100 of 98,524 protein–RNA pairs in 18.8 ms