Protein–RNA interactions for Protein: P40965

MSH4, MutS protein homolog 4, yeastyeast

Predicted RBP Predictions only

Length 878 aa.

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Protein RNA Prediction (catRAPID) Interaction (RIP-Chip)
Gene UniProt Accession Gene Ensembl Transcript ID Length Transcript Status Prediction Score Prediction z-Score Detected Interaction
MSH4P40965 YNL028WYNL028W 318 nt3.29□□□□□ -1.88
MSH4P40965 RGM1YMR182C 636 nt3.28□□□□□ -1.88
MSH4P40965 MRPL33YMR286W 261 nt3.28□□□□□ -1.88
MSH4P40965 YMR324CYMR324C 243 nt3.28□□□□□ -1.88
MSH4P40965 YPR203WYPR203W 309 nt3.28□□□□□ -1.88
MSH4P40965 TFC4YGR047C 3078 nt3.28□□□□□ -1.89
MSH4P40965 JSN1YJR091C 3276 nt3.27□□□□□ -1.89
MSH4P40965 PSO2YMR137C 1986 nt3.27□□□□□ -1.89
MSH4P40965 YIL059CYIL059C 366 nt3.27□□□□□ -1.89
MSH4P40965 COF1YLL050C 432 nt3.27□□□□□ -1.89
MSH4P40965 YLR120W-AYLR120W-A 102 nt3.27□□□□□ -1.89
MSH4P40965 YMR321CYMR321C 318 nt3.27□□□□□ -1.89
MSH4P40965 DUG2YBR281C 2637 nt3.27□□□□□ -1.89
MSH4P40965 FIR1YER032W 2631 nt3.26□□□□□ -1.89
MSH4P40965 FLO11YIR019C 4104 nt3.26□□□□□ -1.89
MSH4P40965 DNL4YOR005C 2835 nt3.26□□□□□ -1.89
MSH4P40965 SSN2YDR443C 4263 nt3.26□□□□□ -1.89
MSH4P40965 YLR278CYLR278C 4026 nt3.26□□□□□ -1.89
MSH4P40965 QCR7YDR529C 384 nt3.26□□□□□ -1.89
MSH4P40965 snR70snR70 164 nt3.25□□□□□ -1.89
MSH4P40965 PCC1YKR095W-A 267 nt3.25□□□□□ -1.89
MSH4P40965 RPL38YLR325C 237 nt3.25□□□□□ -1.89
MSH4P40965 RPL33AYPL143W 324 nt3.25□□□□□ -1.89
MSH4P40965 BUD4YJR092W 4344 nt3.25□□□□□ -1.89
MSH4P40965 MRP10YDL045W-A 288 nt3.24□□□□□ -1.89
MSH4P40965 YLR154W-EYLR154W-E 204 nt3.24□□□□□ -1.89
MSH4P40965 CSE2YNR010W 450 nt3.24□□□□□ -1.89
MSH4P40965 CDC20YGL116W 1833 nt3.23□□□□□ -1.89
MSH4P40965 HDA3YPR179C 1968 nt3.23□□□□□ -1.89
MSH4P40965 BAS1YKR099W 2436 nt3.23□□□□□ -1.89
MSH4P40965 RGA2YDR379W 3030 nt3.23□□□□□ -1.89
MSH4P40965 YDR209CYDR209C 414 nt3.23□□□□□ -1.89
MSH4P40965 LSO2YGR169C-A 279 nt3.23□□□□□ -1.89
MSH4P40965 RRT15YLR162W-A 189 nt3.23□□□□□ -1.89
MSH4P40965 FPR1YNL135C 345 nt3.23□□□□□ -1.89
MSH4P40965 YOR015WYOR015W 360 nt3.23□□□□□ -1.89
MSH4P40965 SLN1YIL147C 3663 nt3.23□□□□□ -1.89
MSH4P40965 MET6YER091C 2304 nt3.22□□□□□ -1.89
MSH4P40965 AI5_ALPHAQ0070 1893 nt3.22□□□□□ -1.89
MSH4P40965 PSK2YOL045W 3306 nt3.22□□□□□ -1.89
MSH4P40965 RAM2YKL019W 951 nt3.22□□□□□ -1.89
MSH4P40965 YML037CYML037C 1023 nt3.22□□□□□ -1.89
MSH4P40965 PHO2YDL106C 1680 nt3.22□□□□□ -1.89
MSH4P40965 NCL1YBL024W 2055 nt3.22□□□□□ -1.89
MSH4P40965 NFT1YKR103W 3657 nt3.22□□□□□ -1.89
MSH4P40965 TOM1YDR457W 9807 nt3.22□□□□□ -1.89
MSH4P40965 GCV2YMR189W 3105 nt3.22□□□□□ -1.89
MSH4P40965 KAR3YPR141C 2190 nt3.21□□□□□ -1.9
MSH4P40965 YGL024WYGL024W 336 nt3.21□□□□□ -1.9
MSH4P40965 LCL1YPL056C 306 nt3.21□□□□□ -1.9
MSH4P40965 KEL2YGR238C 2649 nt3.21□□□□□ -1.9
MSH4P40965 SUL1YBR294W 2580 nt3.2□□□□□ -1.9
MSH4P40965 ASG1YIL130W 2895 nt3.2□□□□□ -1.9
MSH4P40965 UPS1YLR193C 528 nt3.2□□□□□ -1.9
MSH4P40965 SDC25YLL016W 3147 nt3.2□□□□□ -1.9
MSH4P40965 GIN4YDR507C 3429 nt3.19□□□□□ -1.9
MSH4P40965 LCD1YDR499W 2244 nt3.19□□□□□ -1.9
MSH4P40965 PDR3YBL005W 2931 nt3.19□□□□□ -1.9
MSH4P40965 YML007C-AYML007C-A 111 nt3.19□□□□□ -1.9
MSH4P40965 YBR224WYBR224W 516 nt3.19□□□□□ -1.9
MSH4P40965 MDM20YOL076W 2391 nt3.19□□□□□ -1.9
MSH4P40965 DFG16YOR030W 1860 nt3.18□□□□□ -1.9
MSH4P40965 UTP14YML093W 2700 nt3.18□□□□□ -1.9
MSH4P40965 VTC1YER072W 390 nt3.18□□□□□ -1.9
MSH4P40965 snR43snR43 209 nt3.18□□□□□ -1.9
MSH4P40965 YGR067CYGR067C 2415 nt3.18□□□□□ -1.9
MSH4P40965 SEC7YDR170C 6030 nt3.17□□□□□ -1.9
MSH4P40965 SNU114YKL173W 3027 nt3.17□□□□□ -1.9
MSH4P40965 YDR524C-AYDR524C-A 120 nt3.17□□□□□ -1.9
MSH4P40965 YGL069CYGL069C 465 nt3.17□□□□□ -1.9
MSH4P40965 DOT6YER088C 2013 nt3.16□□□□□ -1.9
MSH4P40965 LRE1YCL051W 1752 nt3.16□□□□□ -1.9
MSH4P40965 YDR426CYDR426C 378 nt3.16□□□□□ -1.9
MSH4P40965 RPL25YOL127W 429 nt3.16□□□□□ -1.9
MSH4P40965 CRS5YOR031W 210 nt3.16□□□□□ -1.9
MSH4P40965 PDE2YOR360C 1581 nt3.16□□□□□ -1.9
MSH4P40965 PFF1YBR074W 2931 nt3.16□□□□□ -1.9
MSH4P40965 DYN1YKR054C 12279 nt3.15□□□□□ -1.9
MSH4P40965 SMD1YGR074W 441 nt3.15□□□□□ -1.91
MSH4P40965 YPL150WYPL150W 2706 nt3.15□□□□□ -1.91
MSH4P40965 YGL217CYGL217C 342 nt3.14□□□□□ -1.91
MSH4P40965 RPS22AYJL190C 393 nt3.14□□□□□ -1.91
MSH4P40965 YLR255CYLR255C 354 nt3.14□□□□□ -1.91
MSH4P40965 YNL097C-BYNL097C-B 123 nt3.14□□□□□ -1.91
MSH4P40965 YOR376WYOR376W 369 nt3.14□□□□□ -1.91
MSH4P40965 PRP6YBR055C 2700 nt3.14□□□□□ -1.91
MSH4P40965 ESC1YMR219W 4977 nt3.13□□□□□ -1.91
MSH4P40965 ECM29YHL030W 5607 nt3.13□□□□□ -1.91
MSH4P40965 SAK1YER129W 3429 nt3.13□□□□□ -1.91
MSH4P40965 TRX1YLR043C 312 nt3.13□□□□□ -1.91
MSH4P40965 YBR182C-AYBR182C-A 195 nt3.13□□□□□ -1.91
MSH4P40965 snR46snR46 197 nt3.13□□□□□ -1.91
MSH4P40965 GEA1YJR031C 4227 nt3.13□□□□□ -1.91
MSH4P40965 CDC27YBL084C 2277 nt3.13□□□□□ -1.91
MSH4P40965 YPR089WYPR089W 2667 nt3.13□□□□□ -1.91
MSH4P40965 CAF120YNL278W 3183 nt3.12□□□□□ -1.91
MSH4P40965 PRE4YFR050C 801 nt3.12□□□□□ -1.91
MSH4P40965 tW(CCA)G1tW(CCA)G1 72 nt3.12□□□□□ -1.91
MSH4P40965 tW(CCA)G2tW(CCA)G2 72 nt3.12□□□□□ -1.91
MSH4P40965 tW(CCA)JtW(CCA)J 72 nt3.12□□□□□ -1.91
Retrieved 100 of 7,029 protein–RNA pairs in 73.3 ms